Check with SQLite3Result::numColumns() for an empty result before calling SQLite3Result::fetchArray().
In contrast to the documentation SQLite3::query() always returns a SQLite3Result instance, not only for queries returning rows (SELECT, EXPLAIN). Each time SQLite3Result::fetchArray() is called on a result from a result-less query internally the query is executed again, which will most probably break your application.
For a framwork or API it's not possible to know in before whether or not a query will return rows (SQLite3 supports multi-statement queries). Therefore the argument "Don't execute query('CREATE ...')" is not valid.