Alkanes

Alkanes are the simplest organic molecules, they only contain C and hydrogen, and only contain single bonds.
Compounds that have the maximum number of bonded hydrogens, are said to be saturated.
Alkanes are saturated hydrocarbons, with a general Formula:

CnH2n+2

The simplest members of this group are the n-alkanes.

H
H C H
H
H H
H C C H

methane C1H4

ethane C2H6

H H
H H H
H C C C H
H H H
H H H H

propane C3H8

H C C C C H

butane C4H10

H H H H
H H H H H
H C C C C C H

pentane C5H12

H H H H H

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The n-alkanes are straight chain molecules, but there are also branched alkanes (isomers).

Any series that differs only by an increasing number of CH2- groups is known as a Homologous series.
The individual members are said to be homologs of each other.

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Nomenclature of Alkanes
There are two general types of nomenclature:
trivial names (acetone, acetic acid)
IUPAC System (propanone, ethanoic acid)
IUPAC or Systematic Names
The systematic way to (UNAMBIGUOUSLY) name all organic compounds.
For alkanes:
(1) Find the longest continuous chain of carbon atoms. This is the base name of the compound.
(2) Number the longest chain beginning with the end nearest a substituent.
(3) Name the substituent groups attached to the longest chain as alkyl groups. Also state the location of each
alkyl group according to its numbered carbon on the main chain.
(4) When two or more substituents are present, list them in alphabetical order. If two or more of the same
alkyl groups are present, use the prefixes di-, tri- etc. to avoid repetition.
Examples:

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If there are two chains of equal length, choose the chain that has the highest number of substituents.

Numbering starts at the end nearest a substituent so that the alkyl substituents have as low numbers as possible.

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Alkyl groups are named by replacing the ane suffix of the alkane name with yl.
E.g.
CH3CH3
Ethane
CH3CH2Ethyl group
CH3CH2CH3 Propane
CH3CH2CH2Propyl group
Common branched alkyl groups have trivial names:

The names sec and tert are short for secondary and tertiary, referring to the degree of alkyl substitution.
H
R C
H

R
R C
H

R
R C
R

Primary
Secondary Tertiary
o
o
o
1 carbon 2 carbon 3 carbon

Prefixes are used when there are more than one type of alkyl substituent
Di = 2
Tri = 3
Tetra = 4
Penta = 5
The prefixes do not count when alphabetizing.
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The below compound is 3-ethyl-2,4,5-trimethylheptane

CH3
H3C

H
C

CH2

HC

H
C

H3C

HC

CH2CH3
CH3

CH3

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Complex Substituents
These are named as follows:
(a) The base alkyl group is numbered starting with the carbon bonded to the main chain.
(b) The substituents are listed with the appropriate numbers, and parentheses are used to separate the
substituent name.

Properties of Alkanes
Natural gas, gasoline, oils and paraffin wax are all alkanes, and so alkanes are often used as fuels, lubricants and
solvents.
Alkanes are non-polar, and are said to be hydrophobic (water hating) since they do not dissolve in water.
Typically the density of alkanes is around 0.7g/ml, and so when an alkane and water are mixed, they will form two
separate phases, with the alkane on top. (Oil floats on water).

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Reactivity of Alkanes
Shorter chain alkanes are obtained commercially by the catalytic cracking of larger chain alkanes such as crude
oil or petroleum refining.

The process of using hydrogen gas to ensure all the products are alkanes is called hydrocracking.
In general, alkanes are chemically unreactive, although reactions do occur under forcing conditions.
Combustion
Alkanes are converted to carbon dioxide and water at high temperatures.
CH3CH2CH3 + 5O2

3CO2 + 4H2O

(This is why alkanes are good fuels).

Halogenation
Alkanes will react with halogens (F2, Cl2, Br2, I2) under conditions of heat or light.

Mixtures of alkyl halides are formed.

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Structure and Conformation of Alkanes

Because alkanes are saturated, they exemplify sp3 hybridized carbon, and most of the fundamental structural and
conformational properties of organic molecules can be found in structures of alkanes.
E.g. Methane, CH4, is the simplest alkane.

It is perfectly tetrahedral, with bond angles of 109.5o.

The C-H bond length is 1.09. (1.09 x 10-10 m).

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Ethane
Ethane can be envisaged as two methyl groups joined by overlapping sp3 orbitals forming the C-C bond.

The C-C bond is 1.54.

As mentioned before, because of the free rotation about the C-C bond, ethane exists in many conformations
(conformers).

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Drawing Conformations
There are three common ways of drawing conformations:
Wedges (seen before)
Newman Projections
Sawhorse Structures
Newman Projections
The molecule is drawn as if it is viewed straight down the C-C bond.

The front carbon is drawn with 3 bonds in a Y shape

The back carbon is drawn as a circle with 3 bonds pointing out from it.

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Sawhorse Structures
These picture the molecule as viewed looking down on the C-C bond at an angle from above.

The dihedral angle, , is the angle between the C-H bonds on the front of a Newman projection, and those on the
back.
When = 0 it is known as the Eclipsed conformation.
When = 60 it is called the Staggered conformation.
Any other conformation is known as a Skew conformation.
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The energy difference between these conformations is only about 3kcal/mol (13kJ/mol). This is a small amount of
energy, and at room temperature, molecules have enough energy to overcome this small barrier.
Therefore, a room temperature sample of ethane gas would contain all the different conformations although not
all in the same proportions.
The energy difference arises from electron repulsions between the different C-H bond electrons.

As the ethane molecule rotates through eclipsed and staggered conformations, the potential energy of the systems
changes.
The resistance to rotation is called torsional strain, and the 3kcal/mol is called the torsional energy.
Many organic reactions depend on a molecules conformation, and the study of this is called conformational
analysis.

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Conformations of Propane

The torsional energy of propane is

3.3kcal.

The increase versus ethane is because of

the greater size of a methyl group than of
a hydrogen.

Eclipsing energy of C-H / C-H <

Eclipsing energy of C-H / C-CH3

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Conformations of Butane
The more carbons in a chain, the more conformations a molecule can adopt.
Butane can adopt four important conformations.

Totally Eclipsed
Gauche
Eclipsed
Anti

Now represents the angle between the two C-CH3 bonds.

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All eclipsed conformations are of higher energy than any of the staggered ones.
The anti conformation is of lowest energy since the bulky methyl groups are oriented furthest away from each other
in this conformation.

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Steric Hindrance
The totally eclipsed conformation of butane is 1.4kcal/mol higher in energy than the other eclipsed conformations,
due to the forcing together of the methyl groups.

The methyl groups electron clouds repel each other.

The interference of bulky substituents with each other is called steric hindrance.
Higher Alkanes
Higher alkanes behave in an analogous way to butane.
The lowest energy conformation for any straight chain alkane is having all the C-C backbone bonds oriented as anti
conformations.

This gives a zigzag type backbone.

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Cycloalkanes
In organic chemistry, many common molecules are cyclic.
Cycloalkanes are simply alkanes that are cyclic.
Just add cyclo- before their name. (The opposite of cyclic is acyclic).

Notice the general formula for cycloalkanes is CnH2n

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Nomenclature of Cycloalkanes
This is the same as for alkanes, although two extra rules apply.
Rule A:

Decide whether the cyclic or acyclic portion contains more carbons. This determines the base name.
(Alkyl-substituted cycloalkane or Cycloalkyl-substituted alkane).

Rule B:

Carbons are numbered to give the lowest numbers for substituted carbons.

Examples:

Numbering starts at the most substituted carbon, and goes around in order to give the lowest numbers.

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When there are more acyclic than cyclic carbons, the cyclic part becomes a cycloalkyl substituent.

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Geometric Isomerism In Cycloalkanes

Open chain alkanes undergo free rotation about their C-C bonds.
Alkenes, with double bonds, cannot undergo free rotation.
Cycloalkanes also cannot undergo free rotation.
Substituted cycloalkanes can also give rise to cis and trans isomers.

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Ring Strain in Cycloalkanes

If a cycloalkane requires bond angles different to 109.5 then the sp3 orbitals cannot overlap as efficiently as
possible.
This gives rise to angle strain (Bayer strain).
Consider planar cyclobutane:

Along with the angle strain, there is also eclipsing of the hydrogens torsional strain.
The combination of angle and torsional strains is called Ring Strain.
Calculation of Ring Strain
This is calculated through heats of combustion.
Already seen that alkanes can be combusted so can cycloalkanes.

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The energy released is the heat of combustion, and this value can be converted in useful information.

Note:

Cyclopropane and cyclobutane are highly strained

Cyclopentane and cycloheptane have low ring strain
Cyclohexane has no ring strain !
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Cyclopropane
Cyclopropane is the most strained cycloalkane.

This is due to two effects:

Angle Strain
Torsional Effects

Bonding Overlap is reduced because the enforced 60 bond angle leads to poor overlap of the sp3 orbitals.
The three membered ring has to be planar, and all the C-Hs are eclipsed.
The angle strain is larger than the torsional effects for cyclopropane.

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Cyclobutane
Cyclobutane is neither planar, nor a perfect square.

A planar geometry would force all the C-H bonds into eclipsing positions.
Cyclobutane actually adopts a slightly puckered conformation, with bond angles of 88. This increases angle strain
but reduces torsional strain.
Cyclopentane

Cyclopentane is not planar either, since this also would require all C-Hs to be eclipsing.
The molecule adopts a puckered envelope conformation, which reduces the torsional strain.

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Cyclohexane
Cyclohexane is by far the most common cycloalkane in nature and also in organic chemistry.
Zero ring strain implies the bond angles must be 109.5 (no angle strain) and also no eclipsing interactions
between the C-H bonds (no torsional strain).
Boat and Chair Conformations
Cyclohexane adopts a puckered structure. The most stable conformation for cyclohexane is called the chair
conformation.

In the chair conformation, all the bond angles are 109.5 and all the C-H bonds are staggered. (Zero ring strain)

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Boat Conformation
Cyclohexane can also exist in another conformation called the boat.

The boat is just a chair with the footrest flipped up.

This also has bond angles of 109.5 and thus avoids any angle strain, but there is torsional strain.
The two hydrogens at the ends of the boat are in close contact, causing torsional strain. These flagpole hydrogens
are eclipsed.
To avoid these unfavorable interactions, the boat conformation skews slightly, giving a twist boat conformation.
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The chair is the lowest energy conformation, although since the energy barrier to ring flip is fairly small, there will
always be some other conformations present.
The half chair is the point of highest energy, and is not a stable conformation.

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Axial And Equatorial Positions

If we look at an instantaneous snapshot of cyclohexane in a chair conformation, there are 2 types of C-H bond.

Six of the C-H bonds point straight up and down (axial bonds).
Six of the C-H bonds point out from the ring (equatorial bonds).
Notice the alternating pattern of the positions.

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Conformations of Monosubstituted Cyclohexanes

A substituent on a cyclohexane ring can occupy either an axial or equatorial position.
Consider methylcyclohexane:

The chair conformation with the methyl axial can interconvert via a boat conformation into a chair conformation
with the methyl equatorial.
The energy barrier for this is low, and this interconversion takes place rapidly at room temperature, although the
conformation of lower energy predominates.
It is found that the methyl equatorial conformation is 1.7kcal/mol lower in energy than the methyl axial
conformation.
Both chair conformations are lower in energy than the boat.

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When the methyl group is axial, it is gauche to C3 and C5.

When the methyl is equatorial, it is anti to C3.

So axial methylcyclohexane has 2 gauche interactions (2 x 0.9kcal)

Equatorial methylcyclohexane has no gauche interactions.
Predict that EQUATORIAL is favored by 1.8kcal. (Good agreement).

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This gauche interaction is also known as a 1,3 diaxial interaction.

The axial substituents on C1 and C3 are close in space and their electron clouds repel one another.
Generally a larger substituent gives rise to a larger difference in energy between the axial and equatorial
conformations.

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(Often t-Bu groups are used to fix cyclohexanes into single conformations).

Conformations of Disubstituted Cyclohexanes

There are severe steric interactions when there are two large groups axially oriented on C1 and C3 (or C1 and C5).
E.g. the differences between cis and trans-1,3-dimethylcyclohexanes.

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Consider cis-1,3-dimethylcyclohexane:

The diaxial conformation has very unfavorable 1,3 diaxial interactions, and so the molecule will flip to the lower
energy diequatorial conformation
Now, consider trans-1,3-dimethylcyclohexane:

Both conformations of trans-1,3-dimethylcyclohexane are the same since they both contain an axial and equatorial
arrangement. (Same molecule).
The stable conformer of cis-1,3-dimethylcyclohexane has the diequatorial conformation. The trans isomer must
have one methyl group in an axial (unfavorable) position.
Therefore the cis isomer would be predicted to be more stable by around 1.7kcal/mol.

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Substituents of Different Sizes

The energy difference between axial and equatorial positions is generally higher for larger (bulkier) groups.
Therefore to determine the most stable conformations for substituents of different sizes, if both cannot go
equatorial, then the larger group goes equatorial, and the smaller goes axial.

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Extremely Bulky groups

As a general rule, a t-butyl group will always go equatorial because it is so bulky.

If there are two t-butyl groups in the same cyclohexane molecule, they both will want to go equatorial.
If they cannot, then the molecule can be forced into a twist boat conformation, which is less sterically crowded, and
of lower energy.

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Bicyclic Alkanes
When two or more rings are joined, the molecule is said to be polycyclic.
(A molecule with two joined rings is bicyclic, etc.)
There are 3 ways that rings can be joined:
Fused
Bridged
Spirocyclic
Fused Rings
Fused rings share two adjacent carbon atoms and the bond between them. (These are the most common).
Bridged Rings
These share two non-adjacent carbon atoms (the bridgehead carbons) and one or more carbon atoms between
them.
Spirocyclic Compounds
The two rings share only one carbon atom. (These are comparatively rare).

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Nomenclature of Bicyclic Alkanes

Rule 1

The name is based on the number of carbons in the ring systems.

Rule 2

This name is prefixed by bicyclo- (or spiro-), and square brackets with three (or two) numbers.

Rule 3
For fused and bridged compounds: count the carbon bridges around the shared atoms, and arrange the
three numbers in decreasing order. (Spirocyclic systems only have two numbers, but the same rule applies).

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Cis and trans-Decalin

Decalin is probably the most common bicyclic alkane.
It can exist in two geometric isomers (cis and trans decalin). Both isomers have both cyclohexanes in chair
conformations.

Cis-decalin has a cis ring fusion (both hydrogens up)

Trans-decalin has a trans ring fusion. (one hydrogen up, one down)
Cis-decalin is fairly flexible, whereas trans-decalin is quite rigid.

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