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How To Antibiograms

1) To create an antibiogram in WHONET, select "Data analysis" then "Summary" and choose "%Susceptible" for the columns and "Organism" for the rows. 2) Select the organism group, data file, and isolate parameters as desired. 3) Choose "Screen" for the output and click "Begin analysis" to view the results, which can then be copied and pasted into Excel.

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Erika Jose Estrada Oliveros
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125 views

How To Antibiograms

1) To create an antibiogram in WHONET, select "Data analysis" then "Summary" and choose "%Susceptible" for the columns and "Organism" for the rows. 2) Select the organism group, data file, and isolate parameters as desired. 3) Choose "Screen" for the output and click "Begin analysis" to view the results, which can then be copied and pasted into Excel.

Uploaded by

Erika Jose Estrada Oliveros
Copyright
© © All Rights Reserved
Available Formats
Download as DOC, PDF, TXT or read online on Scribd
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How to Antibiograms

From the main WHONET screen after you have opened your Laboratory:

1) Go to Data analysis Data analysis

You will then see the following screen:


2) Click on Analysis type

You will then see the following screen:


In the middle of the screen, you will see two options: 1. %RIS and test
measurements, and 2. Summary.

Select Summary

For the columns, the default selection is %Susceptible (which is often preferred by clinicians
and pharmacists). You can change this to %Resistant or %Non-susceptible (which is often
preferred by microbiologists and epidemiologists). For the rows, the default selection is
Organism. In other words, the results from each species will be summarized in a separate row
row in the output.

Click on OK in the bottom right to select the options.

You will now be at the main Data Analysis screen again:

Click on Organisms.

You will then see the following screen:


Click on Organism groups and double-click on All Enterobacteriaeceae. Click OK to accept
the modifications.

You will again be at the main Data Analysis screen.

Next click on Data Files

You will see the following screen:


Navigate to your data file and select OK

You will then be back at the Data Analysis Screen

If you would like to remove repeat isolates, you can do this by clicking on One Per Patient in
the upper right hand side of the screen.

You will then see this screen:


Choose By patient and then select OK

You will now be at the main Data analysis screen again.

If you would like to choose isolates such as specimen, location, etc. Click on Isolates
You will then see the following screen.

Double Click on the isolate you would like and put in the information required, then click on OK

You will now be on the main Data analysis screen.


You should next choose where you would like the output. In the bottom right corner you will see
a drop down for Output to. Choose Screen.

Click on Begin analysis. If you wish, you can then copy and paste these results to Excel for
further editing of the results for distribution to clinical staff. When you finish reviewing the
results, click on OK to return to the main analysis screen.

Transferring WHONET results to Excel and other softwares

The WHONET results that you see on the screen can easily be transferred to other softwares
such as Microsoft Excel, Word, or PowerPoint. You can do this either by using Copy and
Paste or by saving the results as a file.

Copy and Paste: Click on Copy table. Now open Microsoft Excel, for example by clicking on
your Windows Start, All Programs menus and looking for Microsoft Excel. (Alternatively,
if you want to immediately go to your Windows Desktop, click on the Windows key on your
keyboard and hit the letter D, in other words Windows-D.)

After you have Excel open, go to Edit, Paste. The WHONET results are now in Excel.
You can now use Excel to edit, correct, format, or graph your results.
Now return to WHONET (for example, by clicking on the WHONET icon on the bottom of
your screen). Click on Copy graph. Go back to Excel, find an empty part of the
spreadsheet, and again choose Edit, Paste.

Figure 10. Copying and pasting results to Excel using Copy table and Copy graph from
WHONET.

Save the file: WHONET also has an option for saving the results directly to a file. Because
Copy and Paste works well and is usually very fast, there is often no need to do this, but
there are a few situations where saving the results as a table can be useful. 1. For isolate
listings or resistance profile listings with thousands of rows, the Copy and Paste
approach can be very slow. In this case, saving the results as an Excel or as a text file
would be much faster. 2. When you save the table as an Excel file, WHONET does some
automatic formatting of the results and automatically makes a number of Excel graphs. So
by using the Save table option, this may save you some time formatting the data in Excel.

To save the tables and graphs as an Excel file, click on File. Give a name to the file, for
example S. aureus RIS results.xls. For type of file, select Excel. Notice that the default
location for this file is c:\whonet5\output. Then click OK.
Figure 11. Saving results from WHONET to an Excel file.

Now go back to Excel and select File, Open. Look in the folder c:\whonet5\output for the
file that you just created, and open it up. You will see something the following.

Figure 12. A formatted Excel file created from WHONET.

Then return to WHONET and click Continue to return to the main analysis screen.

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