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Submission Scripts

The document provides examples of submission scripts for running Matlab jobs on the cluster. For long jobs over a week, use the 'matlab.q' queue. For shorter jobs between hours to a few days, use the 'matlabsh.q' queue. Both example scripts set the queue, request 12 Matlab licenses, print the error path and mail variables, and run a Matlab script called 'mytest' or 'mytestsh'.

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Zeke Juarez
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29 views

Submission Scripts

The document provides examples of submission scripts for running Matlab jobs on the cluster. For long jobs over a week, use the 'matlab.q' queue. For shorter jobs between hours to a few days, use the 'matlabsh.q' queue. Both example scripts set the queue, request 12 Matlab licenses, print the error path and mail variables, and run a Matlab script called 'mytest' or 'mytestsh'.

Uploaded by

Zeke Juarez
Copyright
© © All Rights Reserved
We take content rights seriously. If you suspect this is your content, claim it here.
Available Formats
Download as DOCX, PDF, TXT or read online on Scribd
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qstat u * f

For long jobs (a week or more) use the matlab.q in the submission script.

## myscript submission script ##


#!/bin/bash
#$ -N testjob
#$ -M [email protected]
## #$ -M [email protected]
#$ -m beas
#$ -S /bin/bash
#$ -V
#$ -q matlab.q
###$ -q all.q
#$ -cwd
#$ -pe matlab 12
echo $SGE_STDERR_PATH
echo $SGE_O_MAIL
matlab -nodisplay -nosplash -nodesktop -r mytest
## End myscript ##

For shorter jobs (hours to a few days) use the matlabsh.q in the submission script.
## myscript submission script ##
#!/bin/bash
#$ -N testjob
#$ -M [email protected]
## #$ -M [email protected]
#$ -m beas
#$ -S /bin/bash
#$ -V
#$ -q matlabsh.q
###$ -q all.q
#$ -cwd
#$ -pe matlab 12
echo $SGE_STDERR_PATH
echo $SGE_O_MAIL
matlab -nodisplay -nosplash -nodesktop -r mytestsh
## End myscript ##

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