Bio Module 2 PhotoMaster
Bio Module 2 PhotoMaster
5. Internal
1. Organisation Transport in Animals
of Cells Structure & function of human
circulatory system
Unicellular, colonial & multicellular
Changes during circulation
Cell differentiation
Open & closed systems
Tissues, organs, systems
3. Digestion in a Mammal
Physical & chemical digestion, absorption, elimination. Structure of mammalian Digestive System.
Details of enzymes. Details of absorption.
Despite the millions of Paramecia which might The single cell of a unicellular life-form must be
inhabit a pond, they are actually far able to do everything.
outnumbered by the trillions of much smaller
Bacteria & Archaea cells. These prokaryotes In a multi-cellular creature, however, each part of
lack true organelles, but have cell stuctures the body is specialised to do a particular job,
(eg a flagellum, or whip-like “tail”, for moving) and usually has many different specialist cells.
& different “regions” within the cell. This For example, muscle cells are different to nerve
allows each cell to carry out the necessary cells, and blood cells are different again. Before
life-functions. Being very small gives them a we take this idea further, there will be a slight
high SA:Vol. ratio, which gives maximum digression to consider the “in-between” stage
efficiency. between unicellular & multicellular life...
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Colonial Life-Forms
keep it simple science
There are a variety of (generally unrelated) living A Colonial Alga - Volvox
things which are somewhere in-between the A green alga (photosynthetic eukaryote) called
unicellular & multicellular states. They might “Volvox” is an example of a colonial life-form
perhaps give us a glimpse of some possible which has taken a few steps towards true
evolutionary pathways from being unicellular multicellularity.
towards multicellularity.
However, this is NOT multicellular life. Each of the Volvox, therefore, has 2 distinct cell types with
cells is an individual which lives independently & is separate functions and (somehow) has the ability
not part of an organised larger organism. None of
to co-ordinate its activities.
the cells have specialised functions, they simply
live together.
Sponges
Slime Moulds These simple
This little cutey is animals are
known as the “Dog’s undoubtably
Vomit Slime Mould”. multicellular,
For a long time such but only just.
critters were thought
to belong to the If a sponge is
Fungi kingdom. Now pulverised
they are classified through a meat
among the Protista, as ameoba-like protozoans grinder, then
(eukaryotic, single-celled, animal-like cells). Most of placed
the time, these cells live individually in moist soil, undisturbed in a tank of sea water, the surviving
feeding on bacteria. individual cells are capable of reassembling
themselves into a new, living sponge.
However, when certain conditions occur the cells give
off chemicals which cause other cells of their species Sponges consist of several types of specialised
to come together and merge into a mass as large as cells (each with a particular function) but there are
your fingernail, or larger. Their movements become no organs, no nerves or muscles and certainly no
co-ordinated so the mass slowly moves as one. Some body systems comparable to our digestive or
cells sacrifice themselves to die & form rigid spikes respiratory systems.
of dead cells with living reproductive cells at the tip.
These spikes protrude above the main “body” & They are capable of co-ordinating some of their
release spores which drift away to germinate new activities and some species can even “walk”
single-celled individuals. Later, the “body” may split- around the environment at an amazing speed of
up again and the cells disperse into the soil to about 5 mm per day.
become unicellular individuals once more.
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Multicellularity
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Cell Differentiation Nerve Cells (Neurons)
These are the basic units of your Nervous System.
Plants and animals are made of many cells, but each They are responsible for sending signals around the
organism is not just a jumble of cells living and growing body to control & co-ordinate your movements &
in a big lump. There is always an organised structure to bodily functions. They also carry signals in the
the way their bodies are built. network of cells within your brain which make
thinking, memory, emotions & personality all
Firstly, not all the cells in a multicellular organism are the happen.
same. They are differentiated into many shapes and sizes.
Each cell type does a different “job” in the body, and has How does their structure suit their function?
the shape, size and ability to match that function. For Neurons need to carry signals and connect to each
example... other & other body parts such as muscles. In the
brain they need to make many connections to form
Red Blood Cells (Erithrocytes) networks. A nerve signal involves the movement of
The red blood cells are responsible for carrying oxygen K+ and Na+ ions across a membrane. In-between
around your body. signals, the neuron must “re-charge” by pumping
ions across the membrane again. This requires
How does their structure suit function? energy. (See Na-K Pump, Module 1)
Firstly, consider what they have to do:
They achieve all this by:
• carry maximum oxygen, with fast • having at least 1 “axon”. This is a long thin cell
transfer of O2 in/out of the cell by diffusion. projection to carry a nerve signal over a distance.
The axon is insulated like an electrical wire, to
• they must survive being bashed around in the heart & prevent the signal crossing into the wrong pathway.
arteries.
• having many “dendrites”. These are signal
They achieve all this by: receivers. Signals from other neurons are received &
• being completely packed full of the O2 carrier passed on along the axon.
haemoglobin. To fit more in, they have sacrificed most of
their own cell organelles (no nucleus!) • having many mitochondria. The neuron needs a lot
of energy to run the Na-K Pump almost constantly.
• being quite small. This gives them a high SA:Vol. ratio
for rapid diffusion of O2 in or out across their cell
membrane. Their size also suits the body’s smallest
capillaries perfectly.
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Organisation of Multicellularity (cont.)
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The major body systems carry out the By having specialised tissues, organs and systems,
tasks of getting food, water and oxygen your body can do each task very well. Your eye is
and transporting them around so that excellent for seeing things, but useless for jumping.
every cell gets what it needs. That’s OK, because your muscles and bones can do
all the jumping.
A healty human shows her
Co-ordination = Efficiency
skill & co-ordination.
You are a co-ordinated, multicellular organism. Specialised cells, tissues, organs &
systems give you many amazing capabilities, which you carry out with great efficiency.
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This system of leaves is not only the main site of food production
by photosynthesis, but is involved with and connected to the
systems responsible for “transpiration” & “translocation.”
Phase 1
in isa
In the grana,
10 tio
chlorophyll ligh
00 n)
t
’s
absorbs light
energy and
uses it to
split water STARCH
molecules CELLULOSE for storage of
into for building new
Phase 2 food
hydrogen cell walls
and oxygen. In the stroma, a cycle of reactions
The oxygen builds glucose from CO2 and the In fact, plants convert glucose to STARCH so rapidly
is released. hydrogen extracted from that the cells in a plant leaf become packed with
the water. starch grains when it is photosynthesising.
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The Structure of the Leaf
keep it simple science A plant leaf is a factory for photosynthesis. A typical leaf is built so that every part of its
design is suited to the achievement of that one objective... making food.
It is a classic case of Structure matches Function.
A leaf is generally broad, flat and The “veins” contain xylem tubes for
thin. This gives it maximum carrying water and minerals up from
surface area for absorbing light the roots, and phloem tubes for
and carbon dioxide from the air. carrying manufactured food away.
A leaf is thin enough that light Being specially reinforced with
penetrates to reach each layer of tough “lignin”, the veins also
cells within, for maximum support the flimsy leaf, and keep it
photosynthesis. in shape and positioned to catch
maximum light.
The cuticle is a layer of clear,
The Palisade Layer of waxy material. It allows light The epidermis layer
MICROSCOPIC
cells are tightly packed in through, but is waterproof to of cells is transparent
CROSS SECTION
an orderly row immediately prevent excessive water loss. like a window, to let
THROUGH A
under the top epidermis light through to the
LEAF
where there is maximum cells underneath.
light. Each cell contains
many chloroplasts. This is Veins run throughout each
the “engine room” for
leaf. The xylem tubes bring
photosynthesis.
water and minerals from the
roots and release them into
The Spongy Layer has the spongy layer. From
very loosely packed cells, there, some diffuses into the
with lots of spaces cells for photosynthesis,
around them. This allows while the rest evaporates
gases (CO2 & O2) and
through the stomates.
water to easily move
around by diffusion.
There are phloem tubes as
well, which collect the food
The lower leaf surface has many openings, called manufactured in the leaf
“stomates”. These allow: cells and carry it away to
feed other parts of the plant,
• water to evaporate from the leaf (Transpiration). such as roots, stem and
This ensures that water and minerals continue to
flowers which might not be
be “sucked up” from the roots. magnified and
rotated to able to photosynthesise.
surface view
• CO2 to diffuse into the leaf for photosynthesis.
Veins also act as reinforcing,
• O2 to diffuse out of the leaf into the air. helping to keep the flimsy
A magnified surface view of a stomate is shown. leaf deployed to catch
maximum light.
Phase-contrast Microscope
photo of guard cells
forming a stomate.
® A question that may have occurred to you is, “how do scientists know the details of
complex chemistry in living things?” This page (mostly reprinted from Module 1) will
keep it simple science
remind you of the technology used to unravel such things.
Isotopic Tracers
Within each microscopic living cell, thousands of
chemical reactions are constantly occurring. Many
processes involve a sequence or chain of Example of the “Tracer” Method
reactions which need to occur in strict order, each Photosynthesis in plants:
one controlled by enzymes with a precise shape to
“grab” chemicals and either ram them together, or carbon + water glucose + oxygen
tear them apart, then “hand them on” to the next dioxide
step.
This gives clues about what the plant is doing to convert its carbohydrates into different forms AND how
this is linked to the movements of food chemicals throughout the plant.
Movement of materials through a plant is studied in more detail next.
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Photo at left: SEM image of plant stem showing hollow xylem tubes. Cell walls re-inforced with rings
CCA-SA 3.0 unported licence. Image by McKDandy at en.wikipedia.
and spirals of lignin
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Plant Vacular System (cont.)
keep it simple science How do xylem tubes lift water upwards against the force of gravity?
“Transpiration” Cohesion & Adhesion
is the evaporation of water from the leaves. When the Another factor which helps the process is
stomates are open, water can constantly evaporate, creating called “capillarity” or the “capillary effect”.
a tension, or “pull” in the remaining water in the leaves. This is the way that water can “climb up”
the walls of a container forming a meniscus
Water molecules are quite strongly attracted to each other in a test tube, for example. This happens
and tend to cling tightly together. This force is called because water molecules are not only
“cohesion” and is the reason that water tends to form attracted to each other (“cohesion”) but
droplets... little blobs of water that cling together. also to some other substances such as
glass or the inside of a xylem tube. This
So, when water evaporates from leaves and creates a “pull” attraction is called “adhesion”.
force, each water molecule pulls on those behind it because
of the cohesion. Each molecule pulls others upward and so In very narrow tubes (“capillaries”) the
the entire column of water in a xylem tube moves upwards water will climb upwards against gravity
to replace the water lost by transpiration. So water is pulled because of adhesion, and drag more
upwards by a combination of transpiration and cohesion. molecules along by cohesion. This happens
This flow is called the “transpiration stream”. in xylem and helps lift water upwards.
This model explaining xylem function is known as the “Transpiration-Cohesion-Tension Theory”
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PHLOEM CELL
Sugars are actively alive and filled with cytoplasm.
transported in the flow
Flow of cytoplasm carries sugars
of cytoplasm within the through each cell.
cells.
Translocation...
LO
how it works
EM
Tra
Sugar solution
TU
flows due to
n
BE
slo
Sugar is removed by
active transport, requiring The pressure difference is osmosic pressure,
energy. Water flows out of DESTINATION generated by active transport of sugars causing water
cells due to osmosis, Lower Pressure to flow into, or out of cells.
lowering the pressure.
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Gas Exchange in a Plant
keep it simple science Each part of a plant carries out gas exchange with a different structure.
Stomates Lenticels
are simple structures on the stems and
Stomates allow gas exchange in a leaf. Their trucks of plants which allow gas exchange
structure and functioning was covered earlier. to the cells by simple diffusion from the air.
MAGNIFIED Tightly packed
SURFACE VIEW OF cells in stem.
A STOMATE
Surface cells
Lenticel
opening
Loosely
Pore opening packed cells
allow gases
to diffuse
Root Hairs
in and out
Because they increase the surface area of the roots, root hairs are important for gas exchange as well as
water absorption. Oxygen in soil spaces, or dissolved in soil water simply diffuses into the root hair
cells, and spreads to other root cells by further diffusion.
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Protein ENZYME
Amino acid
molecule
molecules
Physical Digestion is the physical cutting & mashing of the food, mainly achieved by the chewing of food in
the mouth. Breaking the food into smaller fragments increases the surface area available for chemical attack by enzymes.
Chemical Digestion involves digestive enzymes as suggested by the diagrams above. More details below.
Protease
A “protease” is a digestive enzyme which attacks proteins.
Most proteases attack a protein chain only at the location
of a specific amino acid. There are a variety of
proteases, each with its own “target” amino acid.
The enzyme latches on to its “target”
(remember the lock-and-key idea)
and breaks the connecting bond between amino acids.
For example, consider an enzyme which breaks the bond These protein
to the right of the triangular amino acid in the diagram. fragments of
variable length are
Later in the digestive process, other protease enzymes (called called “peptides”
“peptidases”) will attack these peptide fragments
and eventually chop them up into individual amino acids.
Lipase
Lipase enzymes attack lipids... the fats & oils, breaking them into individual “fatty acids” & glycerol. Glycerol is a small
sugar-like molecule which holds 3 fatty acids together to make a fat molecule.
For a lipase enzyme to digest a fat molecule, the fat must first be emulsified into water solution.
This is achieved by secretions from the gall bladder.
Amylase
Many foods contain “starch”, a polymer of sugar molecules. There are several different types of starch, but the
commonest is known as “amylose”. So (you guessed it!) the digestive enzyme that attacks it is called “amylase”.
Nuclease is the general name for enzymes which digest nucleic acids, DNA & RNA.
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Human Digestive System
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Structure & Function
Salivary Glands.
Chewing the food begins the An enzyme in saliva begins
digestion process. digesting starch.
Chewing breaks food into
smaller pieces with greater
surface area, so digestive
enzymes can attack it faster. Oesophagus
carries food to the stomach.
Liver
receives and processes
digested nutrients after
they are absorbed into Stomach
blood stream. churns food with acid.
Enzymes digest proteins
in food.
Gall bladder adds bile
to dissolve fats so enzymes
can digest them. Pancreas
adds a cocktail of enzymes
to futher digest food
Small Intestine
completes digestion with a
number of enzymes, then
absorbs nutrients into the blood Large Intestine
stream. Inside, it has many folds absorbs water, vitamins &
or “villi” which increase surface minerals into blood stream.
area for absorption.
Rectum
stores undigested wastes
Caecum & Appendix (faeces) for later elimination.
have no special functions
in humans
(Note: the stomach produces acid which causes most proteins to unravel & lose their normal molecular shape.
This makes them more vulnerable to pepsin attack. Unusual for an enzyme, pepsin has an “optimum pH” around
pH = 2, so it works really well in stomach acid.)
(Note: this organ secretes a chemical which neutralises stomach acid, so as the partly digested food enters the small
intestine, the pH changes dramatically to suit the new army of enzymes which attack it.)
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Absorption of Digested Nutrients
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Intestinal Villi
The photo at right shows a thin section of the inside of a mammal’s
small intestine, seen through a microscope. Notice that the surface
is far from flat & smooth, but covered with projecting “fingers”.
These are called “villi” (singular = villus). The villi greatly increase
the surface area of the intestinal lining available for absorption of
the digested nutrients.
Villus surface
Schematic layer is only
one cell thick.
Diagram of
a Villus
Blood
capillary
“Lacteal” connects
to the Lymphatic
System The structure of a single villus is shown in
the simplified diagram at left.
Nutrients absorbed into the blood flow through a vein directly to the liver. Some nutrients are stored there,
while others undergo chemical processing before being passed via the blood flow to feed all the body’s
cells.
Try Worksheet 5
Water Absorption in the Large Intestine
By the end of the small intestine, most of the useful digested nutrients have been absorbed. The remaining
material is very watery, but the body cannot afford to lose so much moisture.
During its passage through the large intestine, most of this water is re-absorbed from the gut by osmosis.
Soluble minerals & vitamins (including some that are manufactured by gut bacteria) are absorbed along with
the water.
Gradually, the undigested waste becomes semi-solid to form faeces. This is stored in the rectum until it is
passed from the body.
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Lungs in a Mammal
Using the human as a typical example:
The lung is not just a hollow space like a balloon. If it was, the surface area for gas exchange
would be about the size of a sheet of newspaper. By dividing into millions of alveoli, the total
surface area inside your lungs is about the same size as a tennis court!
The inside surface is always kept moist, for gases to dissolve and diffuse. Each alveolus
is in intimate contact with a blood capillary to transport the gases to and from the body
cells.
The requirements for efficient gas exchange have been met.
Oxygen
Breathing O2
When the rib cage moves up and out and the Air in Blood
diaphram moves down, air is sucked into the
Alveoli
lungs via the trachea, bronchi & bronchioles.
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However, a frog’s lungs are much simpler than a Moist Skin also acts as a gas
mammal’s, and don’t have many alveoli. exchange surface
Also, the frog doesn’t just do gas exchange in its lungs: The frog makes up for its
inefficient lungs by carrying out gas exchange through other body surfaces which are
kept moist and are lined with blood vessels... its mouth and throat cavity and the skin all
over its body.
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Gas Exchange in Other Animals (cont.)
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Gas Exchange in a Fish
Land-dwelling, air-breathing animals
always must have their gas exchange
organs inside their bodies so the
moist membranes won’t dry out. In
water this can’t happen, so a fish’s
gills are exposed to the water
environment, but shielded by a tough
“gill cover” to protect the delicate
breathing organs.
WATER
FLOW
BLOOD FLOW IN CAPILLARIES The gills are a series of feather-like plates
around which the water flows. Each gill
plate consists of thousands of tiny
“filaments” each one a thin leaf-shaped
structure packed with blood capillaries.
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Blood Vessels
Arteries carry blood Capillaries are the tiny blood
from the heart out to the vessels which form a network
body tissues. The walls of throughout the tissues so that
an artery are relatively thick every living cell is close to the
and muscular to withstand blood supply. The walls of a
the high pressure in the capillary are only one cell thick,
blood when the heart so diffusion of substances from
pumps. Thick, muscular walls blood to cells (or cells to blood)
is easily achieved.
Artery walls are very elastic, and when a pulse of high pressure blood
passes through, they expand outwards and then contract again, The inside of a capillary is so
helping to push the blood along. This rhythmic expanding and small that red blood cells often
contracting is what you can feel as your “pulse” wherever an artery is travel through it in single file.
close to the skin, such as in your wrist or throat.
VEIN
Veins carry blood back from the Cross-Section
body tissues to the heart. The blood
here is under lower pressure and the
walls of a vein are relatively thin. With blood
little pressure to push blood forward, flow
it is the contraction of the surrounding
muscles which helps push the blood Side view of VEIN showing a
along. Relatively thin walls are often valve.Blood can flow one way,
Some veins contain valves to prevent squashed by surrounding
muscles but not back the other.
back-flow of the blood.
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Structure & Function of the Heart
keep it simple science
A good way to get an understanding of the parts Artery
of the heart & how they function is to begin by to lungs
studying a simple, schematic diagram. (KISS Vein from
Principle!) upper body Aorta
(main artery
Veins TO the Heart to body)
Blood flows into the heart from a vein. Blood first Valve
enters the top chambers of the heart: Valve
• into the Right Atrium from the body.
This blood is depleted in O2, high in CO2 Veins
(solid arrows in diag.)
RIGHT
from
SIDE lungs
• into the Left Atrium from the lungs.
This blood is high in O2, low in CO2 Right Left
(Dotted arrows in diag.) Atrium Atrium
Heart Muscle
Note the thickness of muscle in the various parts.
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Heartbeats Note: Information on this half-page is almost certainly beyond
syllabus requirements. We just think it’s really interesting!
keep it simple science
ECG
The Natural Pacemaker Although we describe nerve signals as “electrical” in nature,
Heart muscle is quite different to every other they are not like electrical currents in a wire. Rather, they are a
muscle in the body. In all other muscles, wave of “de-polarisations” which occur as sodium & potassium
contraction occurs when a nerve signal is sent from ions flood across the cell membranes, triggering the contraction
the brain (or spinal chord reflex arc) to the muscle. of the muscles. This wave spreads rapidly along nerve-like
fibres within the heart muscle.
Heart muscle can be “given orders” from the brain,
(eg if you get a fright, a nerve signal from your If sensitive electrodes are attached to the chest, slight
brain triggers fast, pounding heart beats) but differences in voltage can be detected in the skin caused by this
normally the heart itself commands the regular de-polarisation. Converted into a graph of voltage against time,
beating. this produces an electrocardiogram or ECG.
SA node
voltage
In the heart wall at the top of the
right atrium is a nerve bundle
called the sinoatrial node
(“SA node”). Every second or
so, the SA node fires off a time
nerve-like electrical signal The ECG has become a major diagnostic tool for health care
which spreads rapidly AV node specialists who can figure out all manner of heart abnormalities in
through fibres within the heart conjunction with looking for other symptoms such as body
walls. This causes both atria temperature, breathing rates, fluid swellings, blood chemistry, etc.
to contract, pushing blood into
the ventricles. R
Looked at individually, each “spike”
of an ECG is described by 5 prominent
The signals also reach another bumps, simply named as shown.
nerve nexus... the atrioventricular T
node (AV node). It has a built-in P
“P” is due to de-polarisation of the atria.
delay of a few milliseconds, then The “QRS complex” is due to
fires off another wave of signals de-polarisation of the ventricles.
throughout the ventricular walls causing them to “T” is the recovery, where the muscle is Q S
contract. The AV-node delay is vital to correct beat re-polarising for the next beat.
rhythm.
Every aspect of the shape of the ECG can be used for
The “wave” of signals & contractions die down and diagnosis: the height of each bump, its length, the duration of
the heart muscle relaxes for a fraction of a second, the gaps between each part... it all means something to an
before the entire sequence begins again. expert.
CO2 + H2O H2CO3 H+ + HCO3- It’s the hydrogen ions that create problems.
Hydrogen ions are acids and can lower the
carbonic hydrogen bicarbonate
acid ion ion pH of a cell or the blood.
At the concentrations produced by a typical cell, the hydrogen ions could easily lower the pH of the
cytoplasm by 0.5 pH unit or more. This might not sound like much, but it could be life-threatening.
Remember that enzymes are very sensitive to pH changes and quickly change shape and
lose their catalytic activity. This would be disastrous for cell metabolism.
To avoid this problem, CO2 is carried away in the blood as rapidly as it is produced in the cells.
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This blood from the gut is collected in a vein which takes it Heart
Arteries
directly to the liver. Here some of the nutrients may be absorbed Some Nutrients
from the blood for storage or chemical processing (e.g. glucose is into storage
extracted from the blood and polymerised to form glycogen for Wastes into
storage in the liver). Also in the liver, large amounts of the waste blood
Veins
chemical urea are added to the blood to be carried away for Digested
Nutrients
excretion. move
Liver into blood
Later, as blood flows through capillaries in body tissues such as
muscle or bone, nutrients are absorbed from the blood into the
cells which need energy (glucose) and new chemical building Gut
blocks (amino acids, lipids).
Sooner or later, every bit of blood flows through the kidneys Kidneys
which extract the urea and excess salts and water for excretion as
urine. Wastes and
excess water & salts leave
blood. Excreted in urine.
O2 CO2 Blood flow
in Body tissues
Carbon dioxide
Lungs Nutrients move from blood into cells
Oxygen Blood Air
Air Blood Respiratory Gases O2 & CO2
Gas exchange and transport is
essential for delivering oxygen to
cells and removing CO2.
Heart
Arteries
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Arteries
system quite the same as a mammal, but in all cases the system HEART
Veins
is “closed”. pumps blood
Fluid slowly collects back into veins. The “open” system is not very efficient, because the
Wastes (but not CO2) are taken away for excretion, blood is not forced to keep flowing through blood
and blood returns to the heart. vessels as in a closed system.
In the lungs, where the oxygen concentration is very high, When the oxygenated blood gets to the body tissues the
some oxygen dissolves in the moisture lining the alveoli then reverse happens. The high concentration of dissolved CO2
diffuses into the blood and dissolves in the plasma.. lowers the pH of the blood slightly. This causes the
haemoglobin proteins to change shape slightly and
Oxygen is not very soluble in water, however, and if that’s all release the oxygen molecules.
there was to the story, then our blood could never carry
enough oxygen to supply our cells. Haemoglobin molecules The oxygen diffuses into the cells, and the freed
have a great attraction for oxygen molecules and quickly haemoglobin molecules can pick up some of the CO2
“grab” O2 molecules. molecules and carry them back to the lungs.
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