TB Specimen Collection Thru Processing TrainerNotes PDF
TB Specimen Collection Thru Processing TrainerNotes PDF
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Part 1:
Specimen Collection
Handling and Transport
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Specimen Quality is Important
http://www.aphl.org/aphlprograms/infectious/tuberculosis/Pages/tbtool.aspx
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Working with Healthcare Providers
• Laboratories must develop a good working relationship
with health care providers collecting patient specimens
RESPIRATORY (PULMONARY)
SPECIMENS
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Sputum
• Recently discharged material from the bronchial tree, with
minimal amounts of oral or nasal material
http://www.stoptb.org/wg/gli/assets/documents/29_specimen_condition_transport.doc 8
Sputum Quality
Thick, Watery
Mucopurulent (acceptable if
induced)
Hemoptysis
Salivary
(Bloody
Sputum)
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Indications for Sputum Collection
• Initial diagnosis of TB:
• Collect a series of three sputum specimens, 8-24 hours
apart, at least one of which is an early morning specimen
• Optimally, sputum should be collected before the initiation
of drug therapy
• For release from home isolation:
• If patient is smear positive and on treatment: Collect
sputum until 3 specimens are negative.
• Monitoring of therapy: Obtain sputum specimens for
culture at least monthly until cultures convert to
negative
Centers for Disease Control and Prevention. Guidelines for Preventing the Transmission of Mycobacterium
tuberculosis in Health-Care Settings, MMWR 2005:54, RR-17 10
Specimen Collection: All aerosol producing
procedures pose a risk of exposure
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Specimen Collection
• Suspect or confirmed TB patients should
be in a negative pressure room
• Specimen collection is an aerosol
generating procedure, anyone in the room
during specimen collection must wear a
particulate respirator type N-95 and be
part of the respirator protection plan
• All mycobacteria specimens are collected
into a sealed leak proof container
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Storage and Transport of Sputum
Specimens
• Collection sites should refrigerate samples that
cannot be transported immediately to reduce
growth of contaminating organisms
• Specimens should be delivered to the laboratory
as soon as possible, within 24 hours of collection
is optimal (avoid batching)
• Laboratories may include a cold pack with
specimen transport materials
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Pulmonary Specimens Other Than Sputum:
Collection Guidance
Specimen Collection Volume Transport
Types Requirements
Bronchoalveolar Collect washing Minimum volume 50-ml conical tube or
lavage (BAL) or aspirate in is 3 ml other sterile container
sputum trap
Bronch brush or Transport as soon as
washing Place the brush possible at room
in a sterile, leak- temperature
Endotracheal proof container
aspirate with up to 5 ml If transport is delayed
of sterile saline more than 1 hour,
Transtracheal refrigerate specimen.
aspirate
NON-RESPIRATORY
(EXTRAPULMONARY) SPECIMENS
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Extrapulmonary Specimens
• The laboratory should expect to receive a variety
of extrapulmonary specimens which may be
divided into two groups
– specimens from non-sterile body sites
– specimens from normally sterile body sites
• Should be collected in a sterile leak-proof
container
• Should be transported as soon as possible
• Swabs are generally not acceptable
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Extrapulmonary Specimen
Collection Guidance
Specimen Recommended Volume Collection Transport Recommended
from Non- Collection Time Requirements Frequency for Isolation of
Sterile Body MTBC?
Sites
Gastric Early morning 5–10 ml is One specimen Room Yes
Aspirate before patient optimal; per day on three temperature; if
eats and while maximum consecutive days delayed >1
still in bed volume is 15 ml hour, neutralize
with 100 mg
sodium
carbonate
Urine First morning 10–15 ml One specimen If delayed >1 Yes
specimen (void minimum; per day on three hour, refrigerate
midstream) prefer up to 40 consecutive days
ml
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Suboptimal and Unacceptable
Specimens
• Processing of suboptimal or poor quality
specimens is a burden on both financial and
personnel resources
• Results generated from processing inappropriate
specimens may not be reliable
• Each laboratory must develop its own specimen
rejection criteria and make these criteria readily
accessible to providers
• Clinicians should be notified when a specimen is
rejected and the reason for rejection should be
provided
• Specimens collected by invasive procedures
should not be rejected
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Possible Rejection Criteria (1)
• Labeling of specimen does not match identifiers
on requisition form
• Insufficient volume
• Dried swabs
– Swabs in general are not optimal
• Provide limited material
• Hydrophobicity of mycobacterial cell envelope
inhibits transfer to media
• Pooled sputum or urine
• Sputum left at room temperature for 24 hours
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Possible Rejection Criteria (2)
• Broken specimen containers or leaking
specimens
• Excessive delay between specimen collection
and receipt in the laboratory
• Blood specimens collected in EDTA might be
rejected for culture as these inhibit growth of
MTB
• Tissue or abscess material in formalin
• Gastric lavage fluid if pH not adjusted within 1
hour of collection
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Specimen Collection, Handling, Transport, and Processing
SPECIMEN TRANSPORT: REFERRAL OF
SPECIMENS WITHIN A LABORATORY
NETWORK
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Transport of Biological Substances
(Category B)
Basic triple packaging system
• (i) a leak-proof primary receptacle(s);
• (ii) a leak-proof secondary packaging containing
sufficient additional absorbent material shall be
used to absorb all fluid in case of breakage
• For cold transportation conditions, ice or dry ice shall be placed
outside the secondary receptacle. Wet ice shall be placed in a leak-
proof container.
• (iii) an outer packaging of adequate strength for
its capacity, mass and intended use.
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Transport of Biological Substances
(Category B)
Biological Substance,
Category B
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Sputum Collection Kit
• Insulated mailer with address label
• UN3373 marking and proper
shipping name “Biological
Substance, Category B”
• Sterile plastic conical tube with
label
• Sealable biohazard specimen
transport
• Cool pack
• Absorbent pad
An example from the Wisconsin
State Laboratory of Hygiene • Instruction sheet
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Transport of Biological Substances
• Transport of patient specimens is regulated by
both the Department of Transportation (DOT)
and by International Air Transport Association
(IATA) rules.
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Packing and Shipping Guidance
• ASM website-Guidance: Packing and Shipping Infectious
Substances
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Specimen Collection, Handling, Transport and Processing
ADDITIONAL INFORMATION
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Instructions for Sputum Collection
• Healthcare providers should educate patients on proper specimen
production and collection
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Examples for Instructions for
Sputum Collection
Pennsylvania
Department of
Health 31
Part 2:
Specimen Processing
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Principles of Specimen Processing
Respiratory specimens (and other specimens from non-
sterile sites) require digestion, decontamination, and
concentration:
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Effect of Processing Procedure
• Reagents used for digestion and decontamination, to
some extent, are toxic to mycobacteria
• Add diluent to centrifuge tubes from individual tubes without the lip
of the tube touching or creating an aerosol (do not use common
containers or carboys)
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Digestion & Decontamination Methods
Several methods are available for digestion and
decontamination of clinical specimens:
• N-acetyl-L-cysteine-sodium hydroxide (NALC-
NaOH)
• Commercially available: Alpha-Tec NAC-PAC™, BD
MycoPrep™
• Oxalic acid
• Cetylpyridinium chloride (CPC)-sodium chloride
• NaOH method (Petroff’s method)
• Zephiran-trisodium phosphate (Z-TSP)
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NALC-NaOH Method: Principle
• Most common and preferred method
CLSI M-48A 40
Kent and Kubica
NALC-NaOH Method: Procedure for Sputum
2. Cap tube tightly. Invert the tube so that the NALC-NaOH solution
contacts all inside surfaces of the tube and cap and then mix the
contents for approximately 5-20 seconds with a Vortex mixer.
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NALC-NaOH Method: Procedure for Sputum
• Wipe the lip of the tube with gauze soaked with disinfectant
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NaOH Concentration is Key
• Recommended final concentration is 1.0% NaOH
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Specimen Processing QC
• A Negative Processing Control (10 ml sterile
water or buffer) should be included with each
batch of specimens processed
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To reduce the possibility of Cross
Contamination:
• Use daily aliquots of processing reagents and buffers.
Any leftover should be discarded.
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To reduce the possibility of Cross
Contamination:
• Open the specimen tubes very gently to avoid aerosol
generation.
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Specimen Collection, Handling, Transport and Processing
SPECIMENS FROM CYSTIC FIBROSIS
PATIENTS AND EXTRAPULMONARY SITES
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Cystic Fibrosis (CF) Patients
• Specimens from CF patients are often heavily
contaminated with Pseudomonas aeruginosa.
• If it is known or discovered specimen is from a
patient with CF or notable media contamination
you can process concentrated sediment using
only the 5% oxalic acid method.
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Oxalic Acid Processing Method for Specimens
from CF Patients
• Add an equal amount of 5% oxalic acid to:
- 5-10 ml of primary respiratory specimen or
- NALC-NaOH processed concentrated sediment
• Inoculate media
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Processing Gastric Lavage and Urine
• Centrifuge for 30 minutes at ≥ 3000 x g
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Processing Tissue Specimens
• Lymph node, lung tissue, biopsies
• No decontamination required
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Processing Blood or Bone Marrow Aspirates
PRINCIPLES OF CENTRIFUGATION
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Concentration of Specimens
• Since mycobacteria do not readily sediment, centrifugation force and
time are important for maximal concentration
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Calculation of Centrifugal Force
Formula for calculating a particular centrifugal force
is:
RCF = 1.12r (RPM/1000) 2
where r is the radius, which is the distance in
mm from the center of rotation to a point
within the rotor, and RPM (revolutions per
minute), which is the speed of rotation
QUALITY INDICATORS
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Quality Indicators: Contamination Rate
• “Contamination” occurs when inoculated media is completely
compromised due to overgrowth with non-acid fast
organisms.
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APHL, 2009, Assessing your Laboratory
Potential Causes of High Contamination Rates
• Delays in transport
CLSI M-48A 63
Quality Indicators: Positivity (Recovery) Rate
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References
• Kent and Kubica, Public Health Mycobacteriology, A Guide for
the Level III Laboratory, US Public Health Service. 1985
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References
• Centers for Disease Control and Prevention. Guidelines for Preventing the
Transmission of Mycobacterium tuberculosis in Health-Care Settings, 2005.
MMWR 2005;54(No. RR-17).
• Public Health Mycobacteriology. A Guide for the Level III Laboratory. U.S.
Department of Health and Human Services Public Health Service. Centers
for Disease Control, Atlanta, Georgia. 1985.
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