Lecture 1 - Fundamentals of Organic Chemistry
Lecture 1 - Fundamentals of Organic Chemistry
Fundamentals of
Organic Chemistry
Part 1: Atomic Structure
D R . L O R I C O D S . L A P I TA N J R .
DR. CRISTINA E. TIANGCO
DEPARTMENT OF CHEMICAL ENGINEERING
MANILA, PHILIPPINES
This powerpoint presentation is developed based
from the following references:
Mc Murry, J.E. Organic Chemistry 9th edition
Mc Murry, J.E. Foundations of Organic Chemistry
• Why is it so special?
- 90% of more than 30 million chemical compounds contain
carbon.
- Examination of carbon in periodic chart answers some of
these questions.
- Carbon is group 4A element, it can share 4 valence
electrons and form 4 covalent bonds.
Structure of an atom
◦ Positively charged nucleus (very dense, protons and
neutrons) and small (10-15 m)
Z X #
- -
X
12
--
+
6 +
+ +
- + +
Z = Atomic number -
= # protons = # electrons
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The Atomic Symbol
A = Atomic mass C = Charge = +1
= 11
p + 12
n = 23
23 1+
11
Na
Z = Atomic # = p = 11 # = 1 atom in formula.
Sodium
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Why is the atomic weight on the tables
not a whole #?
47 Atomic number
Silver Name of the element
Ag Elemental Symbol
12 13 14
6 C 6 C C
- 6 -
- - - - -
+ - + +
- + + +
+ + +
+ + +
- + + + + - + +
- - - - - - -
98.89% 1.11% Trace %
Average Atomic weight of C= 12.011 amu
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Radioactive Isotopes
3 14
H-3 1 H C-14
6
C
- -
- -
+
+ +
+
+
- + +
Nucleus is unstable - -
So falls apart (decays)
Giving radioactive particles
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Radioactive Isotopes
3 14
H-3 1 H C-14
6
C
- -
- -
+
+ +
+
+
- + +
Nucleus is unstable - -
So falls apart (decays)
Giving radioactive particles
24
12
Mg
32
18
8 Electrons
2 fill layers
around
nucleus
Low à High
1 4
1 H He
2
7 9
3
Li 4
Be
2, 1 2, 2
1
1 H
11
7 9
Li Be 5
B
3 4
2, 1 2, 2 2, 3
11 12 13
5
B 6
C 7
N
2, 3 2, 4 2, 5
1 4
1 H He
2
7 9 20
Li 4
Be 10 Ne
3
2, 1 2, 2 2, 8
24 40
23 12Mg 18Ar
11 Na
2, 8, 8
2, 8, 1 2, 8, 2
2, 1 2, 2 2, 3
24 27
12Mg 13Al
23
11 Na
2, 8, 3
2, 8, 1 2, 8, 2
2, 1 2, 2 2, 8
24 40
23 12Mg 18Ar
11 Na
2, 8, 8
2, 8, 1 2, 8, 2
An f orbital
5p
Exceptions:
◦ Fill 4s before 3d 4d
◦ Fill 5s before 4 d
5s
◦ Fill 5p before 4f
4p
This is why 3d
transition metals 4s
are assigned as 3p
B group elements.
3s
2p
2s
1s
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Electron Configuration
5d __ __ __ __ __
6s __
4f __ __ __ __ __ __ __
5p __ __ __
4d __ __ __ __ __
5s __
4p __ __ __
4s __ 3d __ __ __ __ __
3px __ y__ z __
3s __
2px __ y__ z __ 7
2s __ Li 1s22s1
3
1s __
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Electron Configuration
5d __ __ __ __ __
6s __
4f __ __ __ __ __ __ __
5p __ __ __
4d __ __ __ __ __
5s __
4p __ __ __
4s __ 3d __ __ __ __ __
3p __ __ __
3s __
2px __ y __z __ 12
2s __
6C 1s22s22p2
1s __
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Classification by sublevels
s
p
H He
Li Be d B C N O F Ne
Na Mg Al Si P S Cl Ar
K Ca Sc Ti V Cr Mn Fe Co Ni Cu Zn Ga Ge As Se Br Kr
Rb Sr Y Zr Nb Mo Tc Ru Rh Pd Ag Cd In Sn Sb Te I Xe
Cs Ba Ls Hf Ta W Re Os Ir Pt Au Hg Tl Pb Bi Po At Rn
Fr Ra Ac
Ce Pr Nd Pm Sm Eu Gd Tb Dy Ho Er Tm Yb Lu
f
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Th Pa U Np Pu Am Cm Bk Cf Es Fm Md No Lr
L.LAPITAN 2014 38
Using the periodic table to find
sublevels
s
1 H He
p
2 Li Be 2 B C N O F Ne
3 Na Mg d 3 Al Si P S Cl Ar
4 K Ca 3 Sc Ti V Cr Mn Fe Co Ni Cu Zn 4 Ga Ge As Se Br Kr
5 Rb Sr 4 Y Zr Nb Mo Tc Ru Rh Pd Ag Cd 5 In Sn Sb Te I Xe
6 Cs Ba 5 Ls Hf Ta W Re Os Ir Pt Au Hg 6 Tl Pb Bi Po At Rn
7 Fr Ra 6 Ac
4 Ce Pr Nd Pm Sm Eu Gd Tb Dy Ho Er Tm Yb Lu
f 5 Th Pa U Np Pu Am Cm Bk Cf Es Fm Md No Lr
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Lewis Structures
7 23
1 3
Li Na
11
1 H
H Na Li
Show only Valence Electrons !
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Lewis Structures
7 23
1 Li 11
Na
1 H 3
H Na Li
Show only Valence Electrons
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Nonmetals Share e-
1 8
with other nonmetals
H 2 3 4 5 6 7 He
Li Be B C N O F Ne
Na Mg Al Si P S Cl Ar
K Ca Ga Ge As Se Br Kr
Metals give e- to nonmetals
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Ionic Bonds
e- moves from Metal à Nonmetal
Stable octets
_
Na + Cl Na+ + Cl
Metal Nonmetal
Cation Anion
Cl +
Cl Cl Cl
sharing
O + O O O of
electrons
N + N N N
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Covalent Bonds
H H H-H H2
Cl Cl Cl-Cl Cl2
O O O=O O2
N N N N N2
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Electronegativity
ØElectronegativity refers to the relative tendency of
an atom to draw electrons to itself in a chemical
bond.
ØElectronegativity increases from left to right and
bottom to top across the periodic chart, with F
being the most electronegative element.
ØIn general, when considering electronegativity,
our reference point will be carbon.
+
H H C Cl Na Cl
H N H H N H N
H
H H
H H
Pyramidal
(109.5o)
Tetrahedral Configuration of Electrons
Trigonal Pyramid Configuration of Atoms
Some common geometries
e-’s in 2 directions = 180o
O=C=O Linear
H : ..F:
5 3
Fundamentals of
Organic Chemistry
Part 2: Models of Chemical Bonding
D R . L O R I C O D S . L A P I TA N J R .
DR. CRISTINA E. TIANGCO
DEPARTMENT OF CHEMICAL ENGINEERING
MANILA, PHILIPPINES
1.5 The Nature of Chemical Bonds:
Valence Bond Theory
Covalent bond forms when two atoms approach each
other closely so that a singly occupied orbital on one
atom overlaps a singly occupied orbital on the other
atom.
1. s
2. p H3C
3. sp N C O
4. sp2
5. sp3
1. s
2. p
H3C
3. sp N C O
4. sp2
5. sp3
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Learning Check:
What type of orbital is not used in constructing the
molecule shown below?
1. s
2. p
O
3. sp
4. sp2 O
5. sp3
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Solution:
What type of orbital is not used in constructing the
molecule shown below?
1. s
2. p O
3. sp
4. sp2 O
5. sp3
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Learning Check:
What is the molecular formula of the molecule
shown below?
1. C8H12O
O
2. C8H11O
3. C8H7O
4. C7H7O
5. C7H10O
1. C8H12O
O
2. C8H11O
3. C8H7O
4. C7H7O
5. C7H10O
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Learning Check:
Electrons cannot occupy an antibonding molecular
orbital.
1. True
2. False
1. True
2. False
1. 14
2. 15
3. 16
4. 17
5. 18
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Solution:
1. 14
2. 15
3. 16
4. 17
5. 18
1. (CH3)2CHCH2COHOHCOH
2. CH3CH3CHCH2C(OH)2CHO HO OH
3. (CH3)2CHCH2C(OH)2CHO
H
4. (CH3)2CHCH2C(OH)2COH
O
5. CH3CHCH3CH2C(OH)2CHO
1. (CH3)2CHCH2COHOHCOH
2. CH3CH3CHCH2C(OH)2CHO
3. (CH3)2CHCH2C(OH)2CHO HO OH
4. (CH3)2CHCH2C(OH)2COH H
5. CH3CHCH3CH2C(OH)2CHO O
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Learning Check:
What is the correct order of carbon-carbon bond
lengths in ethane, ethylene and acetylene?
Fundamentals of
Organic Chemistry
Part 3: Acid - Base Chemistry
D R . L O R I C O D S . L A P I TA N J R .
DR. CRISTINA E. TIANGCO
DEPARTMENT OF CHEMICAL ENGINEERING
MANILA, PHILIPPINES
Acidity and Basicity
There are three definitions of Acids and Bases: the Arrhenius
definition, the Bronsted-Lowry definition, and the Lewis
definition.
Ka
HA + H2O H3O + A
where Ka represents the acid-dissociation constant.
+ -
[H3O ][A ]
Ka =
[HA]
The magnitude of Ka represents the relative strength of the acid. The
stronger the acid, the more it dissociates, giving a larger Ka.
• Weak is favored!
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Acidity and Basicity
Predicting Acidity
In general, the more stable a conjugate base is, the
more acidic the acid from which it came.
- - - -
Basicity CH3 > NH2 > OH > F
basicity increases
- - - -
Stability F < Cl < Br < I
size increases
O O
H3C C O H3C C O
O O O
O O O