MultiGene Thermal Cycler

TC9600-G/ TC9600/TC6000-G/TC6000

Operation Manual

Ver.1.4
Labnet International, Inc.
PCR Disclaimer:
MultiGene Thermal Cyclers can be used for a variety of molecular biology applications
and techniques, including the Polymerase Chain Reaction (PCR). PCR and other
molecular biology processes and techniques may be protected by patents. Purchase of
this product does not convey a license or right to perform patented PCR processes.

Applied Biosystems holds some of the basic PCR patents that may or may not be
currently valid. For additional information on PCR patents held by Apllied Biosystems
and information about acquiring any required licensing for using PCR techniques, please
contact Applied Biosystems at 800-327-3002 or 650-638-5800 or their website:
www.appliedbiosystems.com .
 Table of Contents
1. SAFETY PRECAUTIONS........................................................................................1

2. GENERAL DESCRIPTION .....................................................................................2

2.1 FEATURES ...................................................................................................................2
2.2 PRODUCT OVERVIEW ..................................................................................................2

3. GETTING STARTED................................................................................................6
3.1 UNPACKING.................................................................................................................6
3.2 INITIAL OPERATION .....................................................................................................6
3.3 HEATED LID ................................................................................................................6
3.4 LID OPENING/CLOSING ...............................................................................................7
3.5 FUNCTION MAP .........................................................................................................10
3.6 KEY ENTRY SYSTEM ................................................................................................. 11
3.7 LOADING THE REACTION VESSEL ............................................................................. 11

4. USER FOLDER MANAGEMENT ........................................................................12

4.1 VIEWING A USER FOLDER .........................................................................................12
4.2 CREATING A NEW USER FOLDER ...............................................................................13
4.3 EDITING A USER FOLDER ..........................................................................................13
4.4 DELETING A USER FOLDER........................................................................................14

5. PROTOCOL MANAGEMENT..............................................................................15
5.1 RUNNING A PROTOCOL ..............................................................................................15
5.2 PAUSE A PROTOCOL ...................................................................................................16
5.3 VIEWING RUNNING PROTOCOL INFORMATION...........................................................16
5.4 TERMINATING A PROTOCOL .......................................................................................17

6. CREATING A NEW PROTOCOL.........................................................................18

6.1 CHANGING TEMPERATURE/TIME VALUES..................................................................18
6.2 INSERTING/DELETING TEMPERATURE SEGMENT .......................................................19
6.3 CHANGING TEMPERATURE SEGMENT COUNT (TEMP) AND CYCLE COUNT (CYC) .....19
6.4 ADVANCED SETTINGS................................................................................................19
6.5 SAVING A PROTOCOL .................................................................................................23

7. EDITING(VIEWING) A PROTOCOL..................................................................23

8. DELETING A PROTOCOL ...................................................................................24

9. SYSTEM SETUP .....................................................................................................25

 9.1 DATA LOG .................................................................................................................26
9.2 DATE & TIME ............................................................................................................26
9.3 LID TEMPERATURE ....................................................................................................27
9.4 BEEPER .....................................................................................................................28
9.5 ADMINISTRATOR .......................................................................................................28
9.6 SERVICE MODE .........................................................................................................28

10. MAINTENANCE AND TROUBLESHOOTING .............................................29

10.1 CLEANING THE UNIT................................................................................................29
10.2 CLEANING THE HEATED LID .....................................................................................29
10.3 REPLACING A FUSE .................................................................................................29
10.4 CHANGING THE HEATER BLOCK ...............................................................................29

11. TROUBLESHOOTING ......................................................................................30

11.1 ERROR MESSAGES...................................................................................................31

APPENDIX A: TECHNICAL SPECIFICATIONS ......................................................32

APPENDIX B: PROTOCOLS IN DEFAULT FOLDER .............................................33

APPENDIX C: CE DECLARATION ............................................................................35

APPENDIX D: HYPER TERMINAL AND USB DRIVER SETUP ...........................36

APPENDIX E: MULTIGENE RECOMMENDED CONSUMABLES ......................37

MultiGene Thermal Cycler

1. Safety Precautions
Before using the MultiGene Gradient thermal cycler for the first time, please read this
entire operating manual carefully. To guarantee problem free, safe operation of the
MultiGene thermal cycler, it is essential to observe the following points.
1. Do not use the machine in a potentially explosive environment or with potentially
explosive chemicals.
2. Install the machine in location free of excessive dust.
3. Avoid placing the machine in direct sunlight.
4. Choose a flat, stable surface capable of withstanding the weight of the machine.
5. Install the machine in the room temperature 15 ~ 30°C, relative humidity 20
~80%.
6. DO NOT block the air vents.
7. Keep the side and rear of the machine at least 30cm from the wall or other
machine.
8. Make sure the power source conforms to the required power supply specifications.
9. To avoid electric shock, make sure the machine is plugged into a grounded
electrical outlet.
10. Do not allow water or any foreign objects to enter the various openings of the
machine.
11. Switch off the machine before cleaning or performing service on the machine,
such as replacing the fuses.
12. Repairs should be carried out by authorized service personnel only.

High Temperature Label: Please be aware of the heated block.

Warning Label: Please be aware of the danger of electric shock or other dangers.

1
2. General Description
The MultiGene Gradient thermal cycler is a powerful, reliable and affordable thermal
cycler. It is equipped with a gradient function that enables the user to set a maximum
24 °C temperature gradient between the left and right rows in the sample block at each
temperature.

2.1 Features
Easy-to-operate slide and lever type lid which prevents accidental skin burn
Large LCD panel enhances visibility and ease-of-operation.
Graphic display makes programming quick and simple.
Simple and easy to use graphical interface.
Extended Temperature return function that makes touchdown possible
Gradient function enables optimization of annealing temperatures.
Preset protocols that make starting amplification easier.
Air intake vents on the front and sides and exhaust vents on the rear that reduce
heat-based interference with other equipment.
Interchangeable blocks.
Automatically creates operating history and error logs.
Heated lid to prevent the formation of condensation.
Robust and attractive design.

2.2 Product Overview

The front panel of MultiGene thermal cycler includes a display panel and 22-key keypad
which consists of function keys (F1-F5), alphanumeric keys, directional arrow keys and
the ENTER key.

2
MultiGene Thermal Cycler

Figure 1. Front Panel Overview

Name Function
Function Keys Use the function keys (F1 to F5) to activate the “button” displayed on
(F1 to F5) the screen above the key; for example, F1 for RUN.
Directional The four Directional Arrow keys can move the cursor into different
Arrow Keys directions.
ENTER key The current selection is activated or accepted when the ENTER key is
pressed.
Alphanumeric The alphanumeric keys are usually used as number keys for the entry
Keys (0~9) of time, temperature, password and cycle numbers. When entering a
user name or protocol name, a small screen will pop out to display the
letters after pressing the Alphanumeric keys. Press the selected key
until the desired letter is highlighted. Press the ENTER key to select
the letter or wait 5 seconds.
CLEAR key Press CLEAR key will erase the entry in an input field.
(CE)
STOP key By pressing STOP, the Protocol current running will be terminated.

3
 Figure 2. Front View

Name Function

Lid The lid with heating pad is designed to protect against evaporation
resulting from heating of the reaction tube and reaction plate.
Lid Knob Rotate Lid Knob in clockwise will lower the heating plate to place
pressure on the cap of tubes. This forces the tubes to sit firmly in the
block for better contact. Rotate Lid Knob in counter-clockwise
direction until the Lid pops up. Only after the Lid pops, can users
slide the Lid to the rear.
Sample Block Section of the unit in which sample tubes and plates are placed.
Key-Pad Used to enter the various Protocols and settings.
Control Panel which includes Display and Key-Pad
Display Displays current status of the various system features and functions.
Air Vents (Front) for air output
Air Vents (Left for air output
and Right Sides)
Air Vents for air intake
(Bottom)

4
MultiGene Thermal Cycler

Figure 3. Rear View

Name Function

Power Cable Power cable socket and fuse.

Connector
Power Switch Power On/Off switch
Brightness Control the brightness of LCD panel. Please use Philip-head screw
Adjustment driver to adjust it.
Potentiometer
USB Port For protocol or logs transfer to the computer
RS-232 Port For protocol or logs transfer to the computer
Air Vents(Rear) For air output
Product Label Indicate the model name, serial number, power specification, and
other important information

5
3. Getting Started
3.1 Unpacking
Open the MultiGene Gradient/non-Gradient thermal cycler package and confirm that all
items below are included:
MultiGene Gradient/non-Gradient Operation manual
thermal cycler unit
Electric fuses (7A & 3.15A) AC power cord
Warranty card 0.5/0.2 ml Labnet tubes

If there are any items missing, damaged, or incorrect items, please contact your
distributor or sales representatives immediately.

Note: Please use 7A fuse in power source 100~120/50~60Hz countries, while 3.15A fuse
is for power source 200~220V/50~60Hz countries.

3.2 Initial Operation

Place the machine on a steady, flat table. Please keep the machine at least 30cm from the
wall or other machine. Connect the power cord to the power socket in the rear of the
machine. Check the power source is compatible with your machine’s fuse rating input.

Press Power On/Off Button to switch on the machine. The screen will show the software
version for 10 seconds and then enter User Folder screen. Pressing any key will go to
User Folder screen immediately.

3.3 Heated Lid

The Heated Lid heats the air in the upper part of the sample vessels at higher temperature
than the reaction mixture. This prevents condensation of the evaporated water vapor on
the vessel walls, keeping the concentration unchanged during the heating and cooling
cycles. The top also places pressure on the caps of tubes and film on titer plates to prevent
vapor loss and cross contamination of samples.
When using plates it is highly recommended using a Silicone Compression Mat (Labnet
TC96-CM-10) to assist in placing even pressure on the plates.

Note:

1. If MultiGene is started cold, approximately two to three minutes will be required

6
MultiGene Thermal Cycler
before heated lid is at operating temperature.

2. To avoid heat dissipation, the Heated Lid should be closed and tighten during a
protocol run. Keeping the heated lid open during a protocol run might cause
“HEATER ERROR”, because the heated lid fails to reach the set temperature.

3. To evaporate the condensation water inside sample block, and to avoid “HEATER
ERROR”, users should turn off the Lid Temperature under SYSTEM mode before
heating the sample block and keeping the lid open.

3.4 Lid Opening/Closing

There are two ways to open the lid: 1) Slide the lid to the rear, 2) lift up the lid. The first
method is recommended for common operations and to prevent the skin burn from the
heated lid. The second method is used to clean up the heating plate of the lid.

Rotate Lid Knob in a clockwise direction to lower down the heating plate and press down
on the cap of tubes, tighten until you feel resistance. This adjustment will provide better
contact between the tube or plates and the block for better performance. Rotate the Lid
Knob in counter-clockwise direction as shown in Figure 4 until the Lid pops out. Only
when the Lid pops out, users can slide the Lid to the rear as shown in Figure 5.

To lift up the lid for heating plate cleaning, please refer Figure 6 ~ 8.

Figure 4. Rotate Lid Knob to open the lid

7
 Figure 5. Slide the lid backward to access the block

Figure 6. Slide the lid to align the lid hinge with notches of top case

Figure 7. Lift the lid

8
MultiGene Thermal Cycler

Figure 8. Rest the lid in vertical position

9
3.5 Function Map
The User Screen includes 5 function options; 1) VIEW folders under selected User folder,
2) NEW(Create) a User, 3)EDIT a User, 4)DELETE a User, 5)SYSTEM. Once a user
folder is selected and the password is approved, users can; 1) RUN a Protocol,
2)NEW(Create) a protocol, 3) EDIT(VIEW) a Protocol, and 4) DELETE a Protocol.
The function map can is shown in Figure 6. Various functions, including Gradient, can be
added to the selected/created Protocol.

Main Menu

User Folder

OPEN NEW EDIT DELETE SYSTEM

User User User User

RUN NEW EDIT DELETE Data Log

(VIEW)
Protocol Protocol Protocol Protocol
Date&Time

Lid Temp.
Insert
Beeper
Delete
Administrator
Advanced
Service Mode
Gradient

Increment

Pause

Save

Figure 9. Operation Flowchart

10
MultiGene Thermal Cycler

3.6 Key Entry System

Note that the alphanumeric keys are assigned multiple characters, selectable by repeatedly
pressing the key to cycle through the available characters. The highlighted character or
number will automatically be entered into the name of a newly created or edited Protocol
(or User) after a very short period of time, if users don’t continue to press the key.

Key No. Key Representation

0 0, space, +, =, <, >, &, (, ), %
1 1, . , , ,-, ?, ‘, #, : , ; ,/
2 A, B, C, a, b, c, 2
3 D, E, F, d, e, f, 3
4 G, H, I, g, h, i, 4
5 J, K, L, j, k, l, 5
6 M, N, O, m, n, o, 6
7 P, Q, R, S, p, q, r, s, 7
8 T, U, V, t, u, v, 8
9 W, X, Y, Z, w, x, y, z, 9

3.7 Loading the Reaction Vessel

For the optimal performance of the MultiGene, we recommend Labnet tubes and plates.
The recommended sample volume for 0.2 ml tubes or 96-well plates is 5-100ul, while the
0.5 ml tubes is 50-200ul. If using the heated lid with 96 well plates it is highly
recommended to use a Silicone Compression Mat ( Labnet TC96-CM-10, Axygen
521-01-601) to assist in placing even pressure on the plates.

Note: To avoid deformation of the sample tubes or Strips, it’s important to load at least
one tube in each of the four corners and at least four tubes in the center of the block, this
will distribute the pressure evenly throughout the surface.

11
4. User Folder Management
After the unit is turned on, the initial screen which contains software version and
manufacturer’s name will show up for 10 seconds and then enter User Folder screen.
Pressing any key will go to User Folder screen immediately.
A sample screen is shown below.

User Folder Name Status Bar Date & Time

Directory

USER FOLDERS 8/21/2006 11:00

[ PRESET ]
[ PUBLIC ]
Lab
Mike
Susan
Jeff

Select a user folder

OPEN NEW EDIT DELETE SYSTEM

F1 F2 F3 F4 F5

Users can use the function keys(F1~F4) above to view, create, edit and delete the User
folders. F5:SYSTEM is used for system settings.

Note:

1. The [ PRESET ] and [ PUBLIC ] folders are pre-registered folders which require no
Personal Identification Number(PIN) to enter.

2. The [ PRESET ] folder includes some frequently-used Protocols defined by vendor,

while the [ PUBLIC ] folder is open to all users.

4.1 Viewing a User Folder

All Protocols are stored inside the User folders. Use directional arrow keys to select a
User folder. Press F1:OPEN to view the names of all Protocols inside the selected folder.

12
MultiGene Thermal Cycler
To view the contents of the User, will require you to enter the 4-digit Personal
Identification Number(PIN) as shown in the screen below. After the PIN is entered,
press F1:ACCEPT or ENTER key to confirm the PIN. To run a Protocol, please refer
Section 5.1.

USER FOLDERS>Mike 8/21/2006 11:00

Please enter PIN:

Enter PIN and press ACCEPT, Press ACCEPT if not

PIN protected.
ACCEPT EXIT

F1 F2 F3 F4 F5

4.2 Creating a New User Folder

Under User Folder screen, press F2:NEW can create a new User folder. After entering the
new User name, press F1:ACCEPT to accept the new User folder name. The MultiGene
will prompt you to enter a 4 digit PIN. Pressing F1:ACCEPT will save the new folder
name and PIN.

Max. User folder name: 12 characters

Max. User folder no.: 20

4.3 Editing a User Folder

Under the User Folder screen, use directional arrow keys to select a User folder. Press
F3:EDIT to edit the User name. A PIN is required to edit the User folder name. After
editing the User folder name, press F1:ACCEPT to save the edited User name.

13
4.4 Deleting a User Folder
Use directional arrow keys to select a User folder. Press F4:DELETE to delete the
selected User folder. You are required to enter the PIN and press F1:ACCEPT or
ENTER . The screen will prompt “Do you want to delete”. Press F1:ACCEPT to
confirm the deletion. Press F5:EXIT to abort the deletion.

Note: User folders which contain any protocols can’t be deleted except by administerator.

14
MultiGene Thermal Cycler

5. Protocol Management
After entering the selected User Folder, users can press F1~F4 keys to Run,
New(Create), Edit(View) and Delete a selected Protocol as shown below.

Mike>PROTOCOL 8/21/2006 11:00

PROTOCOL DATE TIME
Touchdown 07/25/06 09:10:20
Lab 07/28/06 03:25:30

Please select a protocol and press ENTER

RUN NEW EDIT DELETE EXIT

F1 F2 F3 F4 F5

5.1 Running a Protocol

1. Press F1:RUN to run the selected Protocol under the User folder screen. The screen
will show as below.

Mike>Lab>RUN 8/21/2006 11:00

1 Temp 3 Temp 25 Cyc 2 Temp 1 Cyc

Temp 94.0 94.0 55.0 72.0 72.00 4.00

Time 5:00 0:30 0:30 0:30 10:00 ∞
Mode:1(1-2) Volume: 50ul(5-100ul)
1:Tube Control 2:Block Control
START EXIT

F1 F2 F3 F4 F5

15
2. Users are required to select a Temperature Control Mode before running the Protocol.
Mode 1(Tube Control): Enable system operation with simulated temperature
control. If Mode 1 is selected, users are required to input the sample volume
(5-100ul). In this mode, temperature control is based on Block temperature
and an algorithm which estimates sample temperature based on the block
temperature and the sample volume. Recommended for more accurate
temperature control.
Mode 2( Block Control): Enable system operation with maximum temperature
control based on the actual block temperature. Recommended for normal
operation.

3. Press F1:START to run the Protocol.

Note:

1. The highlighted temperature (Temp) value represents the current block temperature
during Protocol running. The highlighted time (Time) value below represents the
remaining running time in the temperature segment. Once the countdown is completed,
the highlighted section will continue to move to the next temperature or cycle segment
and start counting down the time.

2. The Lid temperature will flash on the status bar when the Protocol starts and remain
on until it reaches 50ºC. When the lid reaches 50°C “HOT!” will appear in the right
hand corner and remain until the temperature falls below 40°C The sample block will
start to heat up when the lid temperature reaches its set temperature.

5.2 Pause a Protocol

During running of the Protocol, press F1:PAUSE will pause the running Protocol for 10
minutes. The Protocol will continue after the Pause stops. The Protocol won’t be paused
until set temperature is achieved. To resume running the Protocol, press F1:RESUME.

5.3 Viewing Running Protocol Information

Press F2:INFO to view the Protocol information screen as shown below during operation.
Press F5:RETURN to return the running Protocol screen. The Protocol information
screen will return to the running Protocol screen in 3 minutes, if F5:RETURN is not
pressed.

16
MultiGene Thermal Cycler

Lab>RUN>START 8/21/2006 13:00

1 Temp 3 Temp 25 Cyc 2 Temp 1 Cyc

Temp 94.0 94.0 55.0 72.0 72.00 4.00

Time 5:00 0:30 0:30 0:30 10:00 ∞
Mode:1(1-2) Volume: 50ul(5-100ul)
Run started: 08/21/06 12:20:50
Run will end: 08/21/06 13:50:20 RETURN

F1 F2 F3 F4 F5

5.4 Terminating a Protocol

1. Press F5:EXIT or STOP key in the bottom-left side of the Alphanumeric keypad to
terminate a running protocol.
2. The display will show message “Do you want to abort?” as below.
3. Press F1:YES or STOP key again to terminate the Protocol. Press F5:NO to return to
the running Protocol.
4. The display screen will return to Protocol screen.

Mike>Lab>RUN>START 8/21/2006 11:00

1 Temp 3 Temp 25 Cyc 2 Temp 1 Cyc

Temp 94.0 94.0 55.0 72.0 72.00 4.00

Time 5:00 0:30 0:30 0:30 10:00 ∞
Estimated Remaining: 01:20

YES Do you want to abort? NO

F1 F2 F3 F4 F5

17
6. Creating a New Protocol
A new Protocol can be created by going to the User Folder and selecting and editing a
basic Protocol format, and then assigning it a new name.
1. Select User name on User screen. Press F1:OPEN or ENTER button to enter User
Folder.
2. Key in PIN to enter the User’s folder.
3. Press F2:NEW to create a new Protocol by using a standard template, shown below.

Note: Users can create a new Protocol under Public folder without a PIN. Users can
create a new Protocol inside Preset folder, BUT can not save these changes to the
original protocol settings.

1 Temp. Segment 3 Temp. Segments Temp./ Time Values

Mike>PROTOCOL>NEW 8/21/2006 11:00

1 Temp 3 Temp 25 Cyc 2 Temp 1 Cyc

Temp 94.0 94.0 55.0 72.0 72.00 4.00

Time 5:00 0:30 0:30 0:30 10:00 ∞

SAVE INSERT DELETE ADV. EXIT

F1 F2 F3 F4 F5

6.1 Changing Temperature/Time Values

1. Press directional arrow keys to move cursor to the temperature or time settings
required to be changed.
2. Enter your desired values and press ENTER or to move cursor to other values to save
the settings.

18
MultiGene Thermal Cycler

The temperature and time ranges are shown below.

Temperature range: 4.0 to 99.9 ◦C

Time range (minute: second): 00:01 to 99:59 ( 99:99 = ∞ )

6.2 Inserting/Deleting Temperature Segment

Temperature Segment can be inserted or deleted by selecting F2:INSERT or
F3:DELETE key. The inserted or deleted temperature segment is dependent upon the
location on the temperature segment where the cursor is positioned. If the cursor is
positioned inside the first multi-temperature/time segment, pressing F2/F3 will
insert/delete the whole Multi-Temperature Cycle. If the cursor is located in any other
Multi-Temperature/Time segment only the selected segment will be inserted/deleted.

6.3 Changing Temperature Segment Count (Temp)

and Cycle Count (Cyc)
The Temperature Segment Count(Temp) can be modified by entering a new value (1 to 9)
in the first Temperature position and pressing ENTER. When the Temperature Segment
Count is larger than one, the temperature Cycle Count (Cyc) will appear. The
Multi-Temperature Segment will cycle during this segment. The maximum temperature
segment per protocol is 12 segments. The temperature segment count and cycle count
ranges are shown below.

Temperature Segment Count(Temp.) range: 1 to 9

Cycle Count(Cyc) range: 1 to 99

6.4 Advanced Settings

Users can set up the following advanced functions: 1) Gradient, 2) Temperature/Time
Increment/Decrement, 3) Pause,.
F4:ADVANCE button, is used to enter these settings. The screen below will be
displayed.

19
 Mike>PROTOCOL>NEW>ADV. 8/21/2006 11:00
1 Temp 3 Temp 25 Cyc 2 Temp

Temp 94.0 94.0 55.0 72.0 72.0 4.0

Time 5:00 0:30 0:30 0:30 10:00 ∞
Enter desired temp, time or number.

SAVE GRAD. INCRE. PAUSE EXIT

F1 F2 F3 F4 F5

6.4.1 Gradient Temperature Setting

1. To enter a Gradient Temperature setting, place your cursor on the desired Temperature
Segment. Select F2:GRAD. to enter the screen below.
2. If “Gradient is off” Enter the Low-temperature setting and the High-temperature
setting, then press ENTER to confirm the values. The screen will show the calculated
temperature gradient from row 1(Left) to 12(Right). This reflects the variation of the
temperature from the left side (coolest) to the right side (hottest) of the block.
3. Press F1:ACCEPT to confirm the settings. Press F2:CLEAR to re-enter the settings.
A capital letter and High-temperature value; “G70.0”, will appear on the Temperature
Segment graph and Low-temperature value will be shown on the Temp value of the
section.
To remove the Gradient Temperature setting, place your cursor in the same temperature
segment with “G ” Gradient Temperature symbol. Press F2:GRAD. Again. The screen
will show the calculated temperature gradient and High- and Low-temperature settings.
Press F2: GR.OFF to clear the High- and Low-temperature settings. Press F5:EXIT will
delete the Gradient Temperature setting and its symbol.

The Gradient temperature ranges are shown below.

Temperature setting range: 30.0 to 99.0 ◦C
Temperature difference: 6.0 to 24.0 ◦C

20
MultiGene Thermal Cycler
Note: The temperature values between 2nd and 11th rows are calculated values and
represent an algorithmic based on the heat distribution though out the block.

Mike>PROTOCOL>NEW>GRAD. 8/21/2006 11:00

Row 01 02 03 04 05 06
Temp 84.0 84.6 85.2 85.8 86.4 87.0

Row 07 08 09 10 11 12
Temp 87.5 88.0 88.5 89.0 89.5 90.0

Low Temp: 84.0 High Temp: 90.0

GR.OFF GRADIENT ON EXIT

F1 F2 F3 F4 F5

6.4.2 Incremental/Decremental Temperature and Time

Settings
To increase or decrease the dwell time or temperature after each repeat you must have
more than one cycle repeat. i.e. 55ºC and a dwell time 40 seconds, you could decrement
the second step by 5 seconds the second step would be 55ºC and a dwell time of 35
seconds.
1. Place the cursor at the Temperature or Time values. Press F3:INCRE.
2. To select increment/decremental values. The screen will ask to input the increment
values. Press F3: + or F4: - to choose increment or decrement.
3. Enter your desired values and press ENTER. The graph will show the
increment/decrement values.
4. Press F1:ACCEPT to accept the values or F2:CLEAR to re-enter the values.
To remove the Incremental/Decremental Temperature and Time settings, place the cursor
in the temperature segment with “Incremental/Decremental Temperature and Time
values”. Select F2:CLEAR to clear the values. Select F1:ACCEPT will remove the
incremental/ Decremental Temperature setting and its symbol.

21
Temperature Increment

BBB>PROTOCOL>NEW>INCRE. 2005/8/21 13:00

1 Temp 3 Temp 25 Cyc 2 Temp

Temp 94.0 94.0 55.0 72.0 72.0 4.0

Time 5:00 0:30 0:30 0:30 10:00 ∞
Temperature Increment: + 0.0

CLEAR + - EXIT

F1 F2 F3 F4 F5

Max. Temperature incremental value: +/- 9.9 ◦C

Max. Time incremental value (minute:second): +/- 9:59

Note:

1. Temperature limits 4.0ºC to 99.0ºC. DO NOT exceed.

2. Only Multi-cycle segments will have incremental/ decremental time or temperature

function.

Time Increment

BBB>NEW>ADV. 2005/8/21 13:00

1 Temp 3 Temp 25 Cyc 2 Temp

Temp 94.0 94.0 55.0 72.0 72.0 4.0

Time 5:00 0:30 0:30 0:30 10:00 ∞
Time Increment: + 0:00

CLEAR + - EXIT

F1 F2 F3 F4 F5

22
MultiGene Thermal Cycler

6.4.3 Pause Setting

Position your cursor on desired temperature segment. Press F4:PAUSE to add a pause
action during operation. The “Pause” will appear on the Temperature Segment graph.
The pause will last for 10 minutes, then the Protocol will resume the operation.
To remove the Pause setting, place the cursor under “P.” Pause symbol. Press F4:PAUSE
again will remove the Pause setting and its symbol.

6.5 Saving a Protocol

After all settings are entered, press F1:SAVE will store the protocol. Screen will
Prompt “Please enter protocol name” A Protocol name is required to be entered.

Max. Protocol name: 12 characters

7. Editing(Viewing) a Protocol
An editing Protocol can be saved under a new name (newly created Protocol) or under the
same name (edited Protocol).
Under the User’s Folder, choose the Protocol to be edited. Select F3:EDIT to edit the
selected Protocol. This displays the existing Protocol and enables editing of the
temperature segment and numerical values as shown below.
Please refer Chapter 6 Creating a New Protocol to edit the temperature segment and
numerical values, and other advanced functions. Press F1:SAVE to save the edited
Protocol under the original name or F2:SAVE A to as a new protocol.

A>Mike>EDIT 8/21/2006 11:00

Program name:A
Key0(0+=<>&()%)
Key1(1.,-?’#:;/)

Maximum: 12 characters

SAVE SAVEAS CLEAR EXIT

F1 F2 F3 F4 F5

23
8. Deleting a Protocol
1. An existing Protocol can be deleted under a User’s Folder.
2. Under the User’s Folder screen, choose a Protocol. Select F4:DELETE to delete the
selected Protocol.
3. If F4:DELETE is selected the screen will prompt you “Are you sure you want to
delete?” Press F1:YES to confirm the deletion. Press F5:NO to abort the deletion.

MIKE>PROTOCOL 8/21/2006 11:00

PROTOCOL DATE TIME
Touchdown 07/25/06 09:10:20
Lab 07/28/06 03:25:30

Are you sure you want to delete?

YES NO

F1 F2 F3 F4 F5

Note: Protocols in the Preset Protocols Folder can’t be deleted, while Protocols in the
Public Folder can be deleted by any user if not password protected.

24
MultiGene Thermal Cycler

9. System Setup
System Setup contains 7 functions:
1. Data Log: contains the history of the latest-run Protocol.
2. Date&Time: Users can change the Date and Time settings.
3. Lid Temperature: Users can choose the preferred lid temperature as default setting
during running a Protocol.
4. Beeper: Users can turn on/off the audible beep.
5. Administrator: Users can delete unwanted Usernames and their Protocols.
6. Service Mode: is reserved for Service engineers.

SYSTEM 8/21/2006 11:00

Data Log
Date&Time
Lid Temperature
Beeper
Administrator
Service Mode

Press Enter or F1 to select your System.

SELECT EXIT

F1 F2 F3 F4 F5

25
9.1 Data Log
The Data Log records a log of activity for the most recently run Protocol. Executing a
new Protocol updates the history log by overwriting previous log. To export log to a PC a
Hyper Terminal communication protocol must be installed. Hyper Terminal
communication protocol comes free with Windows. Please call for Windows based link.
Once installed to export information to your PC press F1:PC (upload reports to PC).
Please refer Appendix D: Hyper Terminal and USB Driver Setup.

SYSTEM>Data Log 8/21/2006 11:00

FOLDER: Mike
PROTOCOL: Lab
Mode 1 Volume: 50 ul
Protocol completed successfully.
Run started: 06/8/21 13:20:10
Run finished: 06/08/21 14:25:00

PC Exit

F1 F2 F3 F4 F5

9.2 Date & Time

Users can change the date type, default date and time of this unit by selecting Date&Time
screen as shown below under SYSTEM screen. Please remember to press F1:ACCEPT
to store your settings.

26
MultiGene Thermal Cycler

SYSTEM>DATE&TIME 8/21/2006 11:00

Data TYPE: 1
(1. Y/M/D 2.M/D/Y 3.D/M/Y)
Default Date: 08/21/06
Default Time: 11:17:44

Press F1 to save your settings

ACCEPT EXIT

F1 F2 F3 F4 F5

9.3 Lid Temperature

Users can change the temperature of lid of this unit by selecting Lid Temperature screen
as shown below under SYSTEM screen. Please remember to press F1:ACCEPT to store
your settings. Two temperature segements: 60~65 ◦C and 100~115 ◦C are available.

SYSTEM>LID TEMPERATURE 2006/8/21 11:00

Lid Temperature Function: 1
(1:ON 2:OFF)
Lid Temperature: 110 ◦C
(60 ~ 65 ),(100 ~ 115) ◦C

Press F1 to save your settings

ACCEPT EXIT

F1 F2 F3 F4 F5

27
9.4 Beeper
Users can turn ON or OFF the sound of this unit by selecting the Beeper screen as shown
below under SYSTEM screen. Please remember to press F1:ACCEPT to store your
settings.

SYSTEM>BEEPER 8/21/2006 11:00

Beeper Function: 1
(1:ON 2:OFF)

Press F1 to save your settings

ACCEPT EXIT

F1 F2 F3 F4 F5

9.5 Administrator
The password of Administrator is “9600”. The Administrator of this unit has rights to
delete any User Folder and any Protocols inside a User’s Folder.

9.6 Service Mode

Only authorized service personnel have the password to enter Service Mode and perform
necessary maintenance and repairs.

28
MultiGene Thermal Cycler

10. Maintenance and Troubleshooting

10.1 Cleaning the unit
Please ensure that no liquid is spilled onto or into the unit. In addition, periodically wipe
it clean of dust and other residue that comes with normal operation of the unit. Use a soft,
lint-free cloth and deionized water.

10.2 Cleaning the heated lid

Make sure the MultiGene is unplugged and cooled down. To clean the heated slide the
lid back on the tracks until the front black pins align with the two slots, taking care that
the rolleiflex cable is clear. Lift the lid from the front, (be careful of sharp edges) and flip
up. Use mild detergents to clean material from the lid. A kimwipe™ dipped in 70%
ethanol will help remove and residue from sealing tape. Make sure the lid is dry prior to
lowering it into the tracks. Once the lid in secure in the tracks make sure the lid easily
slides forward.

10.3 Replacing a Fuse

The fuse is located in the power socket module, just below the power connector. If the
unit does not turn on when the power switch is turned on, then replace the fuse.
To replace the fuse:
1. Disconnect the power cord from the unit.
2. Remove the fuse drawer with a small-blade screwdriver.
3. Pull the fuse out of the fuse socket and replace the fuses with one having the
correct current rating.
4. For 100V-120V operation: Use 7.0A, 5 x 20mm, Glass Tube.
5. For 220 V- 240 V operation: Use 3.15A, 5 x 20 mm, Glass Tube.
6. Reinsert fuse into the fuse socket. Reinsert the fuse drawer.

10.4 Changing the heater block

1. Slide the lid to the furthest point back.
2. Remove the two plastic plugs and loosen and remove the tow screws holding the
face plate.
3. Flip the face plate forward to gain access to the block.
4. Remove the two set screws holding the heating block.

29
 5. Gently slide the heating block until the plug is exposed then disconnect.
6. Slide the new block into place and connect the plug.
7. Gently slide the block until the two screw holes are lined up.
8. Replace the two screws and plugs.
9. Shut the face panel and secure it with two screws.

11. Troubleshooting
Problem Cause Action
The display is off even when 1. Power is not reaching the 1. Check power source
power is switched on. system. voltage.
2. Power cord is not 2. Reconnect the power
plugged into the socket cord.
properly. 3. Replace the power fuse.
3. Power fuse is blown out. 4. Return the unit for
4. Block fuse is blown out. service.
Can’t reach 4°C. 1. Operating temperature 1. Operate the unit in a
environment may be environment temperature
unsuitable. between 15 to 30 °C.
2. Electronic cooling 2. Return the unit for
element may be damaged service.
or aged.
Cycle time is too long 1. Operating environment 1. Operate the system in a
temperature may be temperature environment
unsuitable. between 15 to 30 °C.
2. Electronic cooling 2. Return the unit for
element may be damaged service.
or aged. 3. Return the unit for
3. Faulty temp. sensor. service.
Lid heater does not work. 1. Lid heater is set off. 1. Check Lid Temperature
2. Lid sensor problem setting in System Mode.
2. Return the unit for
service.
No key entry sound. 1. Sound may currently be 1. Check Beeper setting in
set off. System Mode.
2. Faulty keys or keypad 2. Return the unit for
wiring. service.
The display goes off. 1. Faulty backlight. 1. Check the LCD contrast.

30
MultiGene Thermal Cycler
2. Faulty LCD panel 2. Return the unit for
service.
Display is too dark or light Backlight brightness is not Adjust Display Brightness
adjusted properly. Potentiometer.
Lid will not close. 1. Foreign matter, between Remove the foreign object or
lid heater and sample matter.
block.
2. Faulty lid lock
mechanism.
Error message appears. Refer to list of error Check the nature of the error
messages below. and take the suggested
actions.

11.1 Error Messages

Message Cause Action
HEATER ERROR! Lid temperature sensor problem. Reboot the unit.
Lid temperature exceeds 132 °C.
Lid temperature can’t reach the set
temperature.
BLOCK ERROR! Block temperature sensor or heating Cool down the room
element problems. temperature. Reboot the unit.
The unit can’t reach the set
temperature, because the room
temperature is too high.
The block temperature exceeds 108
°C.
ROOM ERROR! Room temperature sensor problem. Reboot the unit
ROOM > 30 °C The room temperature exceeds 30 Cool down the room
°C. temperature. Reboot the unit.
Two running units are too close to Remove any objects
each other. blocking the vents.
Keep two running units at
least 30cm from each other.

31
Appendix A: Technical specifications
Model Name TC9600-G TC9600 TC6000-G TC6000
Sample Capacity 0.2ml x 96 tubes 0.5ml x 60 tubes
Temperature Ranges 4 ~ 99.9 °C 4 ~ 99.9 °C
Temperature Accuracy +/- 0.5 °C ( 30 to 99.9 °C) +/- 0.5 °C ( 30 to 99.9 °C)
+/- 2 °C ( 4 to 15 °C) +/- 2 °C ( 4 to 15 °C)
Temperature +/- 0.5°C +/- 0.5°C
Uniformity
Max. Temp. 3°C / 2 °C 3°C / 2 °C
Increment/Decrement
Rate
Gradient Temperature 30 ~ 99 °C N/A 30 ~ 99 °C N/A
(Max. temp. (Max. temp.
difference: 24 °C) difference: 24 °C)
Max. Lid Temperature 100~115 °C 100~115 °C
Protocol Capacity 100 sets 100 sets
Operating Temperature 15 ~ 30 °C 15 ~ 30 °C
Operating Humidity 20 ~ 80% RH 20 ~ 80% RH
Networking 1 x RS-232, 1 x USB 1 x RS-232, 1 x USB
Power Supply 100 to 240V AC, 50/60 Hz, 100 to 240V AC, 50/60 Hz,
500VA 500VA
Dimensions (WxDxH) 24 x 25 x 42cm 24 x 25 x 42cm
Weight (Net) 9 Kg 9 Kg

32
MultiGene Thermal Cycler

Appendix B: Protocols in Default Folder

2-Step

PRESET>2-STEP>RUN 8/21/2006 11:00

1 Temp 2 Temp 25 Cyc 2 Temp 1 Cyc

Temp 94.0 94.0 55.0 55.00 4.00

Time 5:00 0:30 0:30 10:00 ∞
Mode:1(1-2) Volume: 50ul(5-100ul)
1:Tube Control 2:Block Control
START EXIT

F1 F2 F3 F4 F5

Gradient

PRESET>GRADIENT>RUN 8/21/2006 11:00

1 Temp 3 Temp 25 Cyc 2 Temp 1 Cyc
G.

Temp 94.0 94.0 55.0 72.0 72.0 4.0

Time 5:00 0:30 0:30 0:30 10:00 ∞
Mode:1(1-2) Volume: 50ul(5-100ul)
1:Tube Control 2:Block Control
START EXIT

F1 F2 F3 F4 F5

33
Touch down

PRESET>Touch do.>RUN 2005/8/21 13:00

1 Temp 3 Temp 20 Cyc 2 Temp

- 0.5

Temp 95.0 95.0 65.0 72.0 72.0 4.0

Time 5:00 0:30 0:30 0:30 10:00 ∞
Mode:1(1-2) Volume: 50ul(5-100ul)
1:Tube Control 2:Block Control
START EXIT

F1 F2 F3 F4 F5

Time Increment

PRESET>Time inc.>RUN 2005/8/21 13:00

1 Temp 3 Temp 20 Cyc 2 Temp

- 0:05

Temp 95.0 95.0 65.0 72.0 72.0 4.0

Time 5:00 0:30 0:30 0:30 10:00 ∞
Mode:1(1-2) Volume: 50ul(5-100ul)
1:Tube Control 2:Block Control
START EXIT

F1 F2 F3 F4 F5

34
MultiGene Thermal Cycler

Appendix C: CE Declaration

Labnet International Inc.

31 Mayfield Avenue
Edison, NJ 08837,
U.S.A.

Declaration of Conformity

Product Name: MultiGene Gradient/Non-Gradient Thermal Cycler

Model Names: TC9600-G/ TC-9600 / TC6000-G / TC6000

All models comply with the following European standards:

EMC: EN 61326 (Group 1, Class B)

Safety: EN 61010-1 and EN 61010-2-010

To the best of my knowledge and belief, these units conform to these

standards.

Name: James McGuffick

Position: Quality Assurance Manager
Issue Date: 2006/10/4

35
Appendix D: Hyper Terminal and USB
Driver Setup
Users are required to purchase the USB or RS-232 cable to connect the MultiGene and
the PC. For USB connection, users are required to install the USB driver.

Hyper Terminal Setup:

1. Click on the start tab of Windows and go to accessories.
2. Click the accessory tab.
3. Go to Communication tab and click
4. Click Hyper Terminal
5. You will be prompted by “default telnet program” select NO.
6. Name the connection link
7. Select the com port COM3
8. Port settings
a. Bits/sec 9600
b. Parity None
c. Stop bits 1
b. Flow control None

USB Driver Installation:

1. Place CD into computer select PL-2303-Driver on disc.
2. Follow install process, once program is installed click finished tab.
3. Connect the MiltiGene to your computer by the USB cable.
4. Click the start tab and go to Control Panel and double click.
5. Go to System icon and double click
6. In System select the Hardware tab.
7. In Hardware tab select Device manager.
8. Under ports select the Serial comport (COM 3)*

36
MultiGene Thermal Cycler

Appendix E: MultiGene Recommended

Consumables
Consumables Pack Description Catalog
Size Number
Plates
TC96-NS-10 10 96 Well Polypropylene Clear
No Skirt
TC96-NS-10 10 96Well Polypropylene Clear
Elevated skirt
TCF8-02-C 20 0.2 ml 1 x 8 Tube Clear
TCF8-02-A 20 0.2 ml 1 x 8 Tube assorted colors
TCD8-02-C 20 0.2ml 1 x 8 domed Tube s clear
TCD8-02-A 20 0.2 ml 1 x 8 domed Tube assorted colors

Consumables Pack Description Catalog

Size Number
Sealing Mats/Tape
TC-96-MAT 20 Sealing Mat 96 well Microplate
TC96-AS-100 100 Thermal Tape
PCR-AS-200 100 Aluminum Sealing Tape

Consumables Pack Description Catalog

Size Number
Compression Mat
TC96-CM-10 10 Silicone Compression Mat

Sealing Tape
Clear sealing tape will seal 96 and 384 well Plates when used with Labnets compression
mat this polypropylene film eliminates well to well contamination and cross-over in PCR
applications
Functional Temperature range -40ºC to +104ºC Cat# TC96-TT

Sealing Tape
Aluminum sealing tape will seal 96 and 384 well Plates when used with Labnet’s

37
compression mat this polypropylene film eliminates well to well contamination and
cross-over in amplification applications. Ideal for light sensitive samples and its
uniformly applied adhesive provides optimum well sealing
Functional Temperature range -80ºC to +104ºC Cat# TC-AS-100.

Silicone Compression Mat is used to seal 96 well plates when using the MultiGene
Thermal Cycler heated lid function. These silicone mats can be cleaned and sterilized
by either 10% hypochlorite solution and ddi water rinse, or by autoclaving at 121ºC for
15 minutes. Cat# TC96-CM-100

38