NF148 Protocole-General-Validation en
NF148 Protocole-General-Validation en
: NF148
Issue date: 30 October 2013
CONTENTS
Introduction ......................................................................................................................... 4
1 Purpose ......................................................................................................................... 4
2 Normative references ................................................................................................... 4
3 Terms, definitions and symbols .................................................................................. 4
3.1 General terms......................................................................................................................... 5
3.1.1 Reference method ............................................................................................................... 5
3.1.2 Alternative method ............................................................................................................... 5
3.1.3 Validation of an alternative method ..................................................................................... 5
3.1.4 Analyte ................................................................................................................................. 5
3.1.5 Quantitative method............................................................................................................. 5
3.1.6 Qualitative method ............................................................................................................... 5
3.1.7 Organizing laboratory / expert laboratory ............................................................................ 5
3.1.8 Collaborating laboratory ...................................................................................................... 6
3.2 Validation criteria for qualitative methods .......................................................................... 6
3.2.1 Positive deviation (PD) ........................................................................................................ 6
3.2.2 Negative deviation (ND) ...................................................................................................... 6
3.2.3 Relative sensitivity (SE) ....................................................................................................... 6
3.2.4 Relative accuracy (AC) ........................................................................................................ 6
3.2.5 Relative specificity (SP) ....................................................................................................... 7
3.2.6 Inclusivity and exclusivity (Selectivity) ................................................................................. 7
3.2.7 Relative detection level or LOD50 ........................................................................................ 7
3.2.8 Practicability......................................................................................................................... 7
3.3 Validation criteria for quantitative methods ....................................................................... 7
3.3.1 Linearity ............................................................................................................................... 7
3.3.2 Accuracy .............................................................................................................................. 7
3.3.3 Relative accuracy ................................................................................................................ 7
3.3.4 Repeatability ........................................................................................................................ 7
3.3.5 Reproducibility ..................................................................................................................... 8
3.3.6 Limit of detection.................................................................................................................. 8
3.3.7 Quantification limit (or determination limit) .......................................................................... 8
3.3.8 Inclusivity and exclusivity (Selectivity) ................................................................................. 8
3.3.9 Practicability (see 3.2.8) ...................................................................................................... 8
3.3.10 Acceptability limit ............................................................................................................. 8
4 Principle ........................................................................................................................ 8
5 Preliminary study ......................................................................................................... 9
Page 2/47
NF148 - NF Mark VALIDATION (application to the analysis of water)
General validation protocol – Revision 2 (Issue dated 30 October 2013 – Approval of 17 May 2013)
Page 3/47
NF148 - NF Mark VALIDATION (application to the analysis of water)
General validation protocol – Revision 2 (Issue dated 30 October 2013 – Approval of 17 May 2013)
Introduction
This document sets out a procedure for the characterization and validation of a method of
microbiological analysis (qualitative or quantitative) as compared with a standard reference
method when it exists.
1 Purpose
This document provides guidelines that shall lead to the validation, for a specified scope (e.g.
water intended for human consumption and/or treated water and/or untreated water and/or
surface water and/or deep water and/or bathing water and/or swimming pool water and/or
mineral water and/or bottled water, etc.), of a "rapid" or commercial method of microbiological
analysis designed to find (qualitative method) or count (quantitative method) target
microorganisms as compared with a standard reference method targeting the same
microorganisms.
The procedure is organized in the following way:
1. A preliminary study carried out by an expert laboratory which supplies an initial
characterization of the method in terms of classical validation criteria (repeatability,
practicability ...).
2. An inter-laboratory study designed to estimate various criteria for qualitative methods
(§ 6.1.3) and to construct the accuracy profile (§ 6.2.4), for quantitative methods.
3. Final interpretation of the results.
The methods to be validated may be direct counting methods, for example of colonies, or
indirect counting, for example counting the most probable number MPN.
2 Normative references
The following normative documents contain provisions that, owing to the reference made in
them, constitute valid provisions for this document. In the case of dated references, later
amendments or revisions of these publications do not apply. However, stakeholders in
agreements founded on this document are invited to research the option of applying the most
recent editions of the normative documents indicated below. In the case of undated
references, the latest edition of the normative document referred to applies.
ISO/TR 13843:2000, Water quality – Guidance on validation of microbiological methods.
EN ISO 16140:2003, Microbiology of food – Protocol for the validation of alternative
methods.
Page 4/47
NF148 - NF Mark VALIDATION (application to the analysis of water)
General validation protocol – Revision 2 (Issue dated 30 October 2013 – Approval of 17 May 2013)
3.1.4 Analyte
Component measured using the method of analysis (microorganisms).
Page 5/47
NF148 - NF Mark VALIDATION (application to the analysis of water)
General validation protocol – Revision 2 (Issue dated 30 October 2013 – Approval of 17 May 2013)
Table 1. Types of agreement and deviation of results between the reference and alternative
methods.
Reference method Reference method
Results Total
positive negative
Alternative method PA PD
A+
positive Positive agreement +/+ Positive deviation -/+
NA
Alternative method ND
Negative agreement A–
negative Negative deviation +/-
-/-
Total N+ = PA+ND N– = NA+PD N
Page 6/47
NF148 - NF Mark VALIDATION (application to the analysis of water)
General validation protocol – Revision 2 (Issue dated 30 October 2013 – Approval of 17 May 2013)
3.2.8 Practicability
Usability of a method, defined by a set of criteria given by the user.
3.3.2 Accuracy
Closeness of agreement between a test result and the accepted reference value.
3.3.4 Repeatability
Closeness of agreement between successive measurements of the same quantity, carried
out under the same conditions of measurement.
Page 7/47
NF148 - NF Mark VALIDATION (application to the analysis of water)
General validation protocol – Revision 2 (Issue dated 30 October 2013 – Approval of 17 May 2013)
3.3.5 Reproducibility
Closeness of agreement between successive measurements of the same quantity, carried
out under conditions of reproducibility.
4 Principle
The validation protocol comprises two phases:
1. A preliminary study carried out by a single, so-called "expert laboratory" to estimate the
performance of the alternative method against the reference method, carried out on
natural or artificial samples or on reference materials.
2. An interlaboratory study organised by the expert laboratory with a minimum set number
of laboratories involving the use of artificially spiked samples analysed in parallel using
the alternative method and the reference method.
Before starting the study, whether the scope of the alternative method is compatible with that
of the reference method should be defined.
Page 8/47
NF148 - NF Mark VALIDATION (application to the analysis of water)
General validation protocol – Revision 2 (Issue dated 30 October 2013 – Approval of 17 May 2013)
5 Preliminary study
NOTE The number of strains to test may be increased according to the target (germ) of the
alternative method to be validated (for example: 50 target strains on an inclusive basis when looking
for salmonella).
Choose the target and non-target strains that regularly contaminate the class or classes,
and/or categories of water selected. In addition, strains shall if possible come mainly from
natural samples representative of the water's envisaged scope. The origin of each strain
shall be known, recorded and traceable.
The level of inoculation of each microorganism is defined as follows:
Target microorganisms (inclusivity): shall be around 10 to 100 times greater than the
minimum relative detection level of the alternative method. The alternative method's
complete protocol – without including the test portion – shall be implemented, but
including pre-enrichment if stipulated. If the principle of the reference method is different
from that of the alternative method, both methods are implemented in parallel.
Page 9/47
NF148 - NF Mark VALIDATION (application to the analysis of water)
General validation protocol – Revision 2 (Issue dated 30 October 2013 – Approval of 17 May 2013)
Page 10/47
NF148 - NF Mark VALIDATION (application to the analysis of water)
General validation protocol – Revision 2 (Issue dated 30 October 2013 – Approval of 17 May 2013)
Table 3. Calculation of the relative accuracy, relative sensitivity and the relative specificity
Relative Relative Relative
Category PA NA ND PD N accuracy N+ sensitivity N- specificity
AC SE SP
Water 1
Water 2
…
Total
5.1.2.3 Interpretation
Taking into account the number of positive deviations and the number of negative deviations,
the capability of the alternative method to give more or fewer positive results than the
reference method is evaluated.
The study report shall distinguish the results obtained with naturally contaminated and
artificially contaminated samples.
By way of illustration of the values of the validation criteria, Figure 1 presents 10 extreme
cases in order to understand how to interpret the results better. The left-hand scale gives the
counts for 100 samples, and the right-hand scale gives the values of the criteria in %.
Page 11/47
NF148 - NF Mark VALIDATION (application to the analysis of water)
General validation protocol – Revision 2 (Issue dated 30 October 2013 – Approval of 17 May 2013)
100 0 0 5 0 100
5 15 13 18 %
25 20
80 5 12 80%
12
N
br 60 25 80 80 60%
e
de 60
ré 40 40%
po
ns
es 20 0 20%
0 0%
1 2 3 4 5 6 7 8 9 10
PA NA ND PD Accuracy
Exactitud Sensitivity
Sensibilit Specificity
Spécificit
Comment The expert laboratory may produce an inoculum level of less than 1 cell per test
portion. Low contaminations are controlled by precise calibration and experience acquired with the
strains tested.
Page 12/47
NF148 - NF Mark VALIDATION (application to the analysis of water)
General validation protocol – Revision 2 (Issue dated 30 October 2013 – Approval of 17 May 2013)
5.1.4 Practicability
The following 13 criteria are to be completed by the expert laboratory.
4 Modalities of use after the Packaging or Verification by the expert laboratory that
first use (expiry dates for use) instructions the modalities exist
Page 13/47
NF148 - NF Mark VALIDATION (application to the analysis of water)
General validation protocol – Revision 2 (Issue dated 30 October 2013 – Approval of 17 May 2013)
Communication
Criteria to check concerning the Method of checking the criteria
criteria
9 Time required for obtaining Report and 2 cycles are established describing each
the results certification phase of the method only in terms of
time: 1st cycle: negative samples- 2nd
cycle: positive samples
Page 14/47
NF148 - NF Mark VALIDATION (application to the analysis of water)
General validation protocol – Revision 2 (Issue dated 30 October 2013 – Approval of 17 May 2013)
Choose the target and non-target strains that regularly contaminate the class or classes,
and/or categories of water selected. In addition, strains shall if possible come mainly from
natural samples representative of the water's envisaged scope. The origin of each strain
shall be known, recorded and traceable.
The degree of inoculation of each microorganism is defined as follows:
Target microorganisms (inclusivity): count a suspension of the target germ by the
alternative method and in a non-selective medium. If the principle of the reference
method is different from that of the alternative method, both methods are implemented in
parallel.
Non-target microorganisms (exclusivity): use non-target germ concentrations around 104
to 105 CFU / volume analysed.
When there are discordant results between the alternative method and the reference
method, the laboratory shall investigate to explain the results.
All these results shall be recorded in the final report and their interpretation shall be the
subject of a comment by the expert laboratory.
5.2.3.1 Linearity
To check the linearity, for each category of water studied as described in Annex 1, prepare J
samples of known concentration, such as reference materials or spiked natural samples. The
number J is called the number of levels and it depends on the scope envisaged by the
alternative method and shall be ≥ 3.
At each level and for each category of water, carry out k complete and independent
replications with each method (k ≥ 2). Note yjk the result obtained with the alternative method
and xjk the result obtained with the reference method. These two measurements are paired.
The linearity can generally be studied graphically by transferring the pairs of values obtained
with the 2 methods (reference and alternative) onto a graph. If need be, the straight line
y jk a0 a1 x jk that passes between the points of the graph can be calculated with a linear
regression method. Its slope a1 shall be close to 1 and its y-intercept a0 close to 0. However,
it is not advantageous to carry out statistical compliance tests.
Page 15/47
NF148 - NF Mark VALIDATION (application to the analysis of water)
General validation protocol – Revision 2 (Issue dated 30 October 2013 – Approval of 17 May 2013)
The raw values obtained for the samples analysed are presented in the form of two-
dimensional graphs by categories of water and possibly by type of water if necessary. The
counting results per category are presented on two-dimensional graphs as log N and as
CFU.
The detection and quantification limits are checked, according to the manufacturer's
recommendations and the reference method, in accordance with 6.2.2.4 of EN ISO 16140.
The detection and quantification limits are determined by analysing a pure culture of the
target strain. As a minimum, 6 replicates for each level are tested in sterile water. As a
minimum, 3 to 4 levels shall be tested (in addition to level 0), of which, at least one level with
less than 50 % positive responses and one level with more than 50 % positive responses.
Page 16/47
NF148 - NF Mark VALIDATION (application to the analysis of water)
General validation protocol – Revision 2 (Issue dated 30 October 2013 – Approval of 17 May 2013)
6 Interlaboratory study
The interlaboratory study shall be used to evaluate the performance of the method in several
laboratories under real conditions that represent its routine application. It is organized under
the control of the expert laboratory and generally follows the preliminary study. Its
interpretation is "method" oriented and not "laboratory" oriented.
Page 17/47
NF148 - NF Mark VALIDATION (application to the analysis of water)
General validation protocol – Revision 2 (Issue dated 30 October 2013 – Approval of 17 May 2013)
Page 18/47
NF148 - NF Mark VALIDATION (application to the analysis of water)
General validation protocol – Revision 2 (Issue dated 30 October 2013 – Approval of 17 May 2013)
For level L0 and for each method, calculate the percentage specificity SP as in the following
equation:
FP
SP 100 1
N
Where N- is the total number of all tests L0.
FP is the number of false positives.
For each positive contamination level (L1 and L2), calculate the percentage sensitivity SE
using the following equation:
TP
SE 100
N
Where N+ is the total number of L1 or L2 tests respectively.
TP is the number of true positives.
For each level of contamination and the totality of the results, compare the alternative
method and the reference method in order to calculate the relative accuracy and to examine
the discordant results.
Each pair of results from a sample measured by the alternative and the reference methods
shall be reported as in Table 8.
Page 19/47
NF148 - NF Mark VALIDATION (application to the analysis of water)
General validation protocol – Revision 2 (Issue dated 30 October 2013 – Approval of 17 May 2013)
Table 8. Paired results of the alternative method and the reference method in the context of
the collaborative study.
Alternative method Reference method
Total
+ -
+ PA PD
- ND NA
Total N+ N- N
6.1.3 Interpretation
Compare AC, SE and SP with their corresponding values, obtained in the context of the
preliminary study. These criteria do not really address the variability of the method within a
laboratory and between laboratories.
The degree of agreement, concordance and odds ratio criteria are used to help address this
notion of variability (repeatability and reproducibility) (cf. Annex 5 of this document).
Page 20/47
NF148 - NF Mark VALIDATION (application to the analysis of water)
General validation protocol – Revision 2 (Issue dated 30 October 2013 – Approval of 17 May 2013)
x kIC sx
A tolerance interval describes the dispersion of future results. It takes account of past
experiments and uncertainty concerning the mean. It is expressed with kIT another coverage
factor calculated in a completely different manner from kIC and sR, the reproducibility standard
deviation:
x kIT sR
This calculation is repeated for each level of concentration j to obtain a series of tolerance
intervals which, together, cover the whole of the method's scope and form what is called the
accuracy profile.
Figure 2 gives an example of an accuracy profile constructed with 3 levels of
concentration, between 2.2 and 4.2 log units, which define the validation range or scope of
the method to validate.
The horizontal axis represents the theoretical concentration of the levels and the vertical axis
the difference between the theoretical concentration and the concentration found expressed
as a log, that is, the absolute bias. The tolerance interval limits define a range where a
proportion β of future results is located (in this case 80 %).
Finally, the accuracy profile may be compared to an interval of acceptability, defined
according to the method's purpose. The limits of the intervals of acceptability, recorded as
±λ, are also expressed by a log difference. The interpretation strategy is described in detail in
Annex 7. Example of an accuracy profile calculation. It is defined as informative since it calls
on a limit of acceptability λ, which depends on the method's context of use and the β
proportion chosen.
In the range marked by the broken vertical line the method is capable of producing a
proportion β of results between the limits of acceptability. The method is then said to be valid
in this range indicated by the double arrow. The scope represents the range initially chosen
in which to conduct validation.
Page 21/47
NF148 - NF Mark VALIDATION (application to the analysis of water)
General validation protocol – Revision 2 (Issue dated 30 October 2013 – Approval of 17 May 2013)
0.3
Limit of quantification
0.2
0.1
Bias (log unit)
0.0
2.0 2.5 3.0 3.5 4.0 4.5
-0.1
-0.2
-0.4
Target value in log10 (cfu)
Figure 2. Accuracy profile calculated for 3 levels of concentration. Each grey circle
represents the average concentration found for the level and quantifies the
trueness. The dotted lines mark the interval of acceptability and the continuous
lines the tolerance interval calculated from the intermediate precision standard
deviations for each level. The vertical lines mark the range of validity, in which the
method is capable of producing a known proportion (80 %) of acceptable results.
The operations leading to the construction of the accuracy profile may be summarised as
follows:
1. Organise the collection of data according to the design described in Section 6.2.2.
2. Transform the counts into log10.
IMPORTANT NOTE Present the accuracy profiles in log form and as a number of
microorganisms, except in specific cases validated by the Technical Board.
3. For each level (low, medium and high) calculate the reproducibility standard deviation
with Z replicates of the alternative method, according to ISO 5725.
4. For each level, calculate the median of X replicates of the reference method; these
medians are the target values that shall be achieved by the alternative method, taking
the acceptability limits into account.
5. For each level, calculate the mean of Z replicates of the alternative method.
6. For each level, calculate the tolerance interval limits according to the publication's
formulae (Hubert, 2006). Remember that the tolerance interval defines a range where
microbiologists can guarantee they can produce a known percentage (80 % in the
example) of future measurements.
7. Summarise all the calculations in a table that combines data from Table 10 and from
Table 11 and a figure designed as in Figure 2.
Page 22/47
NF148 - NF Mark VALIDATION (application to the analysis of water)
General validation protocol – Revision 2 (Issue dated 30 October 2013 – Approval of 17 May 2013)
6.2.2 Design
6.2.2.1 Organisation of the interlaboratory study
The interlaboratory study is used to evaluate the alternative method in relation to the
reference method. It shall be organized by the expert laboratory which selects a sufficient
number of laboratories (preferably at least 10) to obtain a minimum of 8 laboratories with no
measurement rejected as an outlier. It is based on sending samples which will be analysed in
duplicate and in parallel by the alternative method and the reference method. The purpose of
these tests is to calculate the performance criteria for the alternative method which will be
used to construct the accuracy profile and make a decision concerning its validity. Guidelines
and requirements for organising, dispatching and conducting interlaboratory studies are
given in Annex 8.
The expert laboratory is responsible for the preparation of the test protocol and the
measurement data sheet for recording all measurements and critical experimental conditions
used by each laboratory. The analyst in each participating laboratory shall demonstrate
his/her competence in the use of the alternative method and of the reference method prior to
participating in the study.
The protocol is the following:
Choose a relevant matrix generally defined after the preliminary study (see 6.2.2.3).
Choose the levels of concentration for artificially or naturally contaminated samples
and which cover at least the lower, middle and upper levels of the expected scope
of the alternative method. A negative control may also be included but the
measurements carried out are not included in the calculations.
The expert laboratory shall demonstrate the homogenous nature and stability of the
three concentration levels tested.
Use the same samples with each method.
The organising laboratory prepares 4 aliquots from each level (that is, two aliquots
each measured by both methods) for each laboratory. These aliquots are coded
blind, such that two are measured by the reference method and two measured by
the alternative method. In some special cases, subdivide the aliquots, just before
measurement with the two methods (see Annex 3. Organisation of analyses carried
out in parallel depending on the type of method).
Each participating laboratory shall analyse the aliquots on a stipulated date using
common batches of media, reagents and/or kits.
The expert laboratory shall define the rules for rounding results.
The expert laboratory pools the laboratories' results and sorts them by level j and by
laboratory i as shown in Table 9.
Page 23/47
NF148 - NF Mark VALIDATION (application to the analysis of water)
General validation protocol – Revision 2 (Issue dated 30 October 2013 – Approval of 17 May 2013)
Labo i J
Labo I J
Two Excel files are provided in a controlled manner by AFNOR Certification and shall be
used to construct the accuracy profile, one for the interpretation of the CFU data and the
other for the Log data.
Page 24/47
NF148 - NF Mark VALIDATION (application to the analysis of water)
General validation protocol – Revision 2 (Issue dated 30 October 2013 – Approval of 17 May 2013)
In microbiology, the measurements X and Z are not always distributed according to normal
distribution, and in particular a high level of asymmetry of distribution can be observed. Often
in order to get a more symmetric distribution, counts are better transformed into logarithms.
Other transformations may also be used for the small numbers found in water microbiology.
These medians are used to calculate the trueness of the method and the accuracy of the
measurements. It can be seen that it may not be an advantage to carry out as many
replicates with the reference method, in as much as they are not always used as such.
Level 1 … J
Number of laboratories I
Number of replicates K
Average theoretical target concentration xj
Average concentration found zj
Repeatability standard deviation s( j )r
Inter-series standard deviation s( j ) B
Intermediate precision standard deviation s( j ) R s( j ) r2 s( j ) 2B
Absolute mean bias z j xj
Obtaining reliable estimates of the mean or the standard deviation can be problematic in the
presence of outliers. ISO 5725 proposes tests for discarding outlier means or variances
(Grubbs and Cochran tests respectively) which can be used to exclude values with a strong
influence and so obtain a better estimate. This nevertheless reduces the number of values
that can be used for statistical analysis and is not recommended for this type of study.
Page 25/47
NF148 - NF Mark VALIDATION (application to the analysis of water)
General validation protocol – Revision 2 (Issue dated 30 October 2013 – Approval of 17 May 2013)
The method proposed by Mee [Mee, 1984] is the one chosen for the protocol. It has also
been the subject of several publications [Hubert, 2003, Hubert 2006a, Hubert, 2006b]. The
calculation is carried out using data Z from Table 10 for each level of concentration j (with 3 ≤
j ≤ J). In order to simplify the formulas, the index j has been omitted from the following
formulae.
The tolerance interval is symmetrical around the average concentration found z and is
expressed by the formula:
z ktol sR (2)
1
ktol t 1 1 (3)
,
2
KIB 2
with:
R 1
B (4)
IR 1
sB2
R . (5)
sr2
In addition, t 1 is the quantile of the Student t distribution for ν degrees of freedom,
;
2
calculated according to an approximation method proposed by Satterthwaite [Mee, 1984].
R 1
2
2
(6)
1 1
R 1
I
I
K 1 KI
For each level j, calculate the coverage factor ktol and the lower and upper limits of the
tolerance interval. The value chosen for β shall be at least 80 %. All the calculations are
collected in a table in the form of Table 11.
Page 26/47
NF148 - NF Mark VALIDATION (application to the analysis of water)
General validation protocol – Revision 2 (Issue dated 30 October 2013 – Approval of 17 May 2013)
sB2
The value of ν depends on the relationship R between the inter-series and repeatability
sr2
variances.
The relationship expresses the relative importance of the series effect. For example, when
the day effect is the series effect, if the method is very stable from one day to the next and
can supply very close results for the same sample, the correction introduced by R will be low.
By contrast, it will increase with this relationship. In fact, the lower the number of degrees of
freedom, the higher the Student t distribution quantile and the more the tolerance interval is
extended.
The following table illustrates this mechanism for a design V with K = 3 and l' = 3 and sFI
constant and equal to 1. When the variance ratio R increases from 0 to 9, the coverage
factor ktol and the scope of the tolerance interval increase from 1.97 to 3.07.
Table 12. Influence of the variance ratio on the scope of the tolerance interval (p = 0.90)
t
K I’ sr sB sFI R ν ;
1
2
ktol
3 3 1.00 0.00 1.0 0.0 7.714 1.869 1.970
3 3 0.71 0.71 1.0 1.0 4.154 2.109 2.332
3 3 0.58 0.82 1.0 2.0 3.219 2.290 2.569
3 3 0.50 0.87 1.0 3.0 2.842 2.408 2.722
3 3 0.45 0.89 1.0 4.0 2.642 2.489 2.826
3 3 0.41 0.91 1.0 5.0 2.518 2.549 2.902
3 3 0.38 0.93 1.0 6.0 2.434 2.594 2.959
3 3 0.35 0.94 1.0 7.0 2.374 2.629 3.004
3 3 0.33 0.94 1.0 8.0 2.328 2.658 3.041
3 3 0.32 0.95 1.0 9.0 2.292 2.681 3.070
Page 27/47
NF148 - NF Mark VALIDATION (application to the analysis of water)
General validation protocol – Revision 2 (Issue dated 30 October 2013 – Approval of 17 May 2013)
0.3
0.2
0.1
Bias (log unit) Limit of quantification
0.0
2.0 2.5 3.0 3.5 4.0 4.5
-0.1
-0.2
-0.3
-0.4
Target value in log10(cfu)
Page 28/47
NF148 - NF Mark VALIDATION (application to the analysis of water)
General validation protocol – Revision 2 (Issue dated 30 October 2013 – Approval of 17 May 2013)
Since the two pairs of values {x1, y1} and {x2, y2} are known, the slope and the y-intercept can
easily be calculated by rules of three and the value of the x-axis for the value –λ can be
predicted. When the intersection occurs with the upper limit, –λ is replaced by +λ:
y2 y1
c1
x2 x1
c0 y1 c1 x1 (7)
c0
LOQ
c1
In the example shown in Figure 3, the values found are as follows:
Points 1 2
Value of the x-axis (target concentration) 2.267 3.230
Value of the y-axis (IT lower limit) -0.211 -0.150
Slope 0.0633
Origin -0.3546
Limit of acceptability (lambda) 0.2
LOQ 2.44
The LOQ, depending on the choices made for acceptability λ and the proportion β, is 2.4 log
units.
If there is no intersection, as shown in Erreur ! Référence non valide pour un signet..
-0.2
-0.3
-0.4
Log(cfu)
Page 29/47
NF148 - NF Mark VALIDATION (application to the analysis of water)
General validation protocol – Revision 2 (Issue dated 30 October 2013 – Approval of 17 May 2013)
P.A., Dewe W., Feinberg M., Lallier M., Laurentie M., Mercier N., Muzard G., Nivet C.,
Valat L. (2003) Validation of quantitative analytical procedure, Harmonization of
approaches. Part I. STP Pharma Pratiques 13(3) 101-138.
Hubert P., Nguyen-Huu J.J., Boulanger B., Chapuzet E., Chiap P., Cohen N., Compagnon
P.A., Dewe W., Feinberg M., Lallier M., Laurentie M., Mercier N., Muzard G., Nivet C.,
Valat L. (2006a) Quantative analytical procedures: Harmonization of the approaches.
Part II – Statistics STP Pharma Pratiques 16(1) 28-58.
Hubert P., Nguyen-Huu J.J., Boulanger B., Chapuzet E., Chiap P., Cohen N., Compagnon
P.A., Dewe W., Feinberg M., Lallier M., Laurentie M., Mercier N., Muzard G., Nivet C.,
Valat L. (2006b) Quantitative analytical procedures validation: harmonization of the
approaches. Part III. Examples of application. STP Pharma Pratiques 16(2) 87-121.
Mee R.W. (1984) β-Expectation and β-Content Tolerance Limits for Balanced One-Way
ANOVA Random Model. Technometrics 26:3, 251-254
Page 30/47
NF148 - NF Mark VALIDATION (application to the analysis of water)
General validation protocol – Revision 2 (Issue dated 30 October 2013 – Approval of 17 May 2013)
Industrial water:
Cooling tower water
Sanitary hot water
Waste water, raw and processed waste water
Page 31/47
NF148 - NF Mark VALIDATION (application to the analysis of water)
General validation protocol – Revision 2 (Issue dated 30 October 2013 – Approval of 17 May 2013)
Page 32/47
NF148 - NF Mark VALIDATION (application to the analysis of water)
General validation protocol – Revision 2 (Issue dated 30 October 2013 – Approval of 17 May 2013)
Pure culture
Produce 6 independent
contaminations
Page 33/47
NF148 - NF Mark VALIDATION (application to the analysis of water)
General validation protocol – Revision 2 (Issue dated 30 October 2013 – Approval of 17 May 2013)
Pure culture
Page 34/47
NF148 - NF Mark VALIDATION (application to the analysis of water)
General validation protocol – Revision 2 (Issue dated 30 October 2013 – Approval of 17 May 2013)
Page 35/47
NF148 - NF Mark VALIDATION (application to the analysis of water)
General validation protocol – Revision 2 (Issue dated 30 October 2013 – Approval of 17 May 2013)
General
The criteria of accuracy, sensitivity and specificity (see 5.2.2) do not really address the
variability of the method within and between laboratories (precision of the method).
This annex provides further criteria (accordance, concordance and odds ratio) which can
help to approach this variability.
Repeatability and reproducibility criteria measure the likely difference between two samples
sent to either the same or to different laboratories. Since the difference for data that are not
quantitative cannot be used, statistics for qualitative methods are instead based on the
probability (expressed as a percentage) that two identical samples both produce the same
result.
These criteria have been developed by the European SMT4 CT 96 2098 project funded by
the European Commission/ DG XII to validate the six main standardised methods used in
food microbiology (co-ordinator: Dr C. Lahellec, AFSSA, France).
The calculations are illustrated by means of the following data (see Table 15).
The data shown in this table are just for one level of one food type. In practice, an
interlaboratory test would be larger, but a smaller dataset makes it easier to explain the
calculations.
Page 36/47
NF148 - NF Mark VALIDATION (application to the analysis of water)
General validation protocol – Revision 2 (Issue dated 30 October 2013 – Approval of 17 May 2013)
Accordance
Definition
Accordance is the percentage chance of finding the same result (i.e. both negative or both
positive) from two identical samples analysed in the same laboratory, under repeatability
conditions (i.e. one operator using the same apparatus and the same reagents within the
shortest feasible time interval).
Accordance is therefore the equivalent of repeatability for quantitative methods.
Calculations
To derive the accordance from the results of an interlaboratory study, the probability that two
identical samples give the same result is calculated for each participating laboratory in turn,
and this probability is then averaged over all the laboratories.
For laboratories (such as laboratory 1) where all the replicates were found to be positive, the
best estimate of the probability of getting the same result is clearly 1.00 or 100 %.
For the other laboratories (in the example, laboratories 5 and 7) the probability that one
replicate will be positive is 3/5=0.60. Square this probability to obtain the probability of a pair
of replicates being positive (0.62 = 0.36). Do the same for the probability of a pair of
replicates both being negative (0.42 = 0.16). Then add these two figures together to get the
overall probability that two replicates will give the same result (0.36 + 0.6 = 0.52). Do this for
all the laboratories (see Table 16).
Page 37/47
NF148 - NF Mark VALIDATION (application to the analysis of water)
General validation protocol – Revision 2 (Issue dated 30 October 2013 – Approval of 17 May 2013)
Concordance
Definition
Concordance is the percentage chance of finding the same result for two identical samples
analysed in two different laboratories.
Concordance is therefore the equivalent of reproducibility for quantitative methods.
Calculations
To calculate concordance from the results of an interlaboratory study, take in turn each
replicate in each participating laboratory, and pair it with identical results from all the other
laboratories.
Concordance is the percentage of all pairings giving the same results for all the possible
pairings of data.
FOR EXAMPLE (see Tables L.1 and L.3 of EN ISO 16140).
Take each replicate in each laboratory in turn, starting with the first replicate from laboratory
1 which is positive. This can be paired with any of the 45 replicates from the other
laboratories, and all but 4 of these pairings (those with two replicates from laboratories 5 and
7) match (i.e. a pair with two positives), 41 pairs thus give the same result.
The same applies to the other four replicates from laboratory 1, so there are a total of 225
(5 x 45) inter-laboratory pairings of replicates involving laboratory 1, of which 205 (5 x 41)
give the same result.
The same applies to all the other laboratories with all replicates found positive.
For laboratory 5, with 3 positive replicates out of 5, the 2 negative replicates each match with
just 2 other negative replicates from laboratory 7, whilst the 3 positive replicates each match
with 43 positive replicates. Thus the total number of pairs with the same result is 133 (2 x 2 +
3 x 43).
Page 38/47
NF148 - NF Mark VALIDATION (application to the analysis of water)
General validation protocol – Revision 2 (Issue dated 30 October 2013 – Approval of 17 May 2013)
Significance tests
A value for the odds ratio of 1,00 would be expected if accordance and concordance were
equal, and the higher the odds ratio, the more interlaboratory variation is predominant.
Nevertheless, values above 1,00 can occur by chance variation, and so a statistical
significance test should be used to confirm whether the variation between laboratories is
actually predominant. The “exact test” is the one that is most recommended for this
purpose1. The philosophy behind such tests is that the probabilities of occurrence are
calculated for all combinations of replicate results that could have been obtained with the
overall numbers of positives and negatives.
FOR EXAMPLE (see Table L.1 of EN ISO 16140).
With a total of 46 positives and 4 negatives, the possible arrangements are given by columns
in Table L.4 of EN ISO 16140.
Page 39/47
NF148 - NF Mark VALIDATION (application to the analysis of water)
General validation protocol – Revision 2 (Issue dated 30 October 2013 – Approval of 17 May 2013)
The actual arrangement is shown in bold (third column) in Table M.4. The test adds up the
probabilities P of all the possible arrangements that show at least as much evidence for
interlaboratory variation as the real arrangement – here they correspond to the permutations
in the two columns on the right. If this sum of probabilities is less than the conventional value
of 0,05 or 5 %, it is unlikely that this degree of interlaboratory variation could have occurred
by chance and thus it is concluded that there is a significant variation in performance
between laboratories.
In the example of Table M.4, P = 0,039 indicates that the variation between laboratories is
significant at a level of 5 %.
Where “exact test” software is not available, an ordinary 2 analysis for the contingency
tables can be used as an alternative. The results of this test are less reliable than the “exact
test” with the number of replicates usually used in collaborative studies, but simulations
suggest that the results provide a reasonable guide to the significance of interlaboratory
differences.
With either test, it shall be remembered that the ability to detect interlaboratory differences is
dependent on the number of laboratories and the number of replicates analysed at each
laboratory. A non-significant test result should not be taken to mean that performance does
not vary between laboratories, but rather that such differences have not been proved; this is
particularly true where the P-value is only just above 0,05. The ideal solution would be to
quote the odds ratio with the standard deviation or confidence limits, but the distribution of
the odds ratio is highly skewed making it very difficult to estimate reliable limits.
Page 40/47
NF148 - NF Mark VALIDATION (application to the analysis of water)
General validation protocol – Revision 2 (Issue dated 30 October 2013 – Approval of 17 May 2013)
In order to simplify scoring, the index j for the level is deleted from the formulae that follow.
The starting point consists of writing the following equality which breaks down the sum of the
deviations from the general average into two sums of squared deviations. nk represents…
K I K K I
( z
k 1 i 1
ik z )2 ( zk z ) 2 ( zik zk ) 2
k 1 k 1 i 1
(8)
This equation is traditionally written in an abbreviated form, involving three sums of squared
deviations (SSD). General equation for variance analysis
SSDt = SSDB + SSDr
Where each of the sums is defined as follows to facilitate interpretation:
SSDt Sum of total deviations from the level's general mean
SSDB Sum of the inter-series deviations
SSDr Sum of the intra-series deviations
As explained in ISO 5725, the sums of squares are developed to make calculation easier;
SSDB is always calculated by difference. This method poses problems if the result is
negative: the value of SCEB is then forced to 0.
SSDB = SSDt – SSDr
if SSDB > 0
if SSDB ≤ 0 then SSDB = 0
2
NOTE An alternative to this method of calculation is to use an algorithm to estimate s B using the
restricted maximum likelihood method (REML) available in most statistical software.
SCEB
( K 1) sr2
sB2 K 1 (10)
I
Finally the intermediate precision variance for the level is equal to: sR2 sr2 sB2 (11)
Page 41/47
NF148 - NF Mark VALIDATION (application to the analysis of water)
General validation protocol – Revision 2 (Issue dated 30 October 2013 – Approval of 17 May 2013)
Lab Series Level Alternative (cfu) Reference (cfu) Alter log. Ref log.
A 1 1 60 120 1.778 2.079
A 1 1 40 75 1.602 1.875
B 2 1 70 95 1.845 1.978
B 2 1 90 85 1.954 1.929
C 3 1 80 90 1.903 1.954
C 3 1 50 80 1.699 1.903
D 4 1 90 90 1.954 1.954
D 4 1 170 120 2.230 2.079
E 5 1 40 90 1.602 1.954
E 5 1 70 130 1.845 2.114
F 6 1 50 130 1.699 2.114
F 6 1 120 65 2.079 1.813
G 7 1 90 95 1.954 1.978
G 7 1 130 110 2.114 2.041
H 8 1 90 100 1.954 2.000
H 8 1 110 110 2.041 2.041
I 9 1 140 70 2.146 1.845
I 9 1 90 80 1.954 1.903
J 10 1 90 120 1.954 2.079
J 10 1 110 110 2.041 2.041
L 11 1 90 140 1.954 2.146
L 11 1 120 110 2.079 2.041
M 12 1 110 95 2.041 1.978
M 12 1 130 130 2.114 2.114
N 13 1 90 95 1.954 1.978
N 13 1 150 80 2.176 1.903
O 14 1 110 65 2.041 1.813
O 14 1 50 95 1.699 1.978
A 1 2 810 1300 2.908 3.114
A 1 2 520 1200 2.716 3.079
B 2 2 940 1000 2.973 3.000
B 2 2 950 1100 2.978 3.041
C 3 2 1000 1000 3.000 3.000
C 3 2 1100 1000 3.041 3.000
D 4 2 1000 1000 3.000 3.000
D 4 2 900 940 2.954 2.973
E 5 2 940 930 2.973 2.968
E 5 2 920 1100 2.964 3.041
F 6 2 810 1000 2.908 3.000
F 6 2 1000 1100 3.000 3.041
G 7 2 910 910 2.959 2.959
G 7 2 1000 900 3.000 2.954
H 8 2 1200 1100 3.079 3.041
H 8 2 1100 1000 3.041 3.000
I 9 2 1100 1000 3.041 3.000
I 9 2 980 1100 2.991 3.041
J 10 2 1200 950 3.079 2.978
Page 42/47
NF148 - NF Mark VALIDATION (application to the analysis of water)
General validation protocol – Revision 2 (Issue dated 30 October 2013 – Approval of 17 May 2013)
Construct the accuracy profile like the one illustrated in Erreur ! Référence non valide pour
un signet..
Page 43/47
NF148 - NF Mark VALIDATION (application to the analysis of water)
General validation protocol – Revision 2 (Issue dated 30 October 2013 – Approval of 17 May 2013)
-0.2
-0.3
-0.4
Log(cfu)
Figure 4. Accuracy profile The limits of acceptability have been chosen at ±0.3 log
0.1
Accuracy
0.0
1.5 2.0 2.5 3.0 3.5 4.0 4.5
-0.1
-0.2
-0.3
Log(cfu)
Figure 5 illustrates the situation where the acceptability limits were chosen at ±0.2 log. The
LOQ is then 2.51 log units.
Page 44/47
NF148 - NF Mark VALIDATION (application to the analysis of water)
General validation protocol – Revision 2 (Issue dated 30 October 2013 – Approval of 17 May 2013)
0.1
Accuracy
0.0
1.5 2.0 2.5 3.0 3.5 4.0 4.5
-0.1
-0.2
-0.3
Log(cfu)
Figure 5. Accuracy profile II. The limits of acceptability have been chosen at ±0.2 log
Page 45/47
NF148 - NF Mark VALIDATION (application to the analysis of water)
General validation protocol – Revision 2 (Issue dated 30 October 2013 – Approval of 17 May 2013)
Transport of samples
The organising laboratory defines the type of water to be used and checks that the transit
packaging is suitable for the intended journey.
Individual samples shall be double sealed to ensure that leakage from any one sample does
not affect the integrity of all the other samples.
Each collaborating laboratory is responsible for supplying the organising laboratory with
relevant details that ensure that the distribution of samples for the study meets international
and national postal regulations.
Concerning refrigeration, the following conditions apply: the temperature of samples during
transport shall be lower than or equal to 10 °C, and, on arrival at the laboratory, between
0 °C and 10 °C.
The packaging conditions and best method of transport shall be determined by the
organising laboratory. An appropriate means of monitoring the samples during transit is
desirable. An additional pack, identical to the test samples, shall be provided in order to
measure their temperature upon receipt.
Page 46/47
NF148 - NF Mark VALIDATION (application to the analysis of water)
General validation protocol – Revision 2 (Issue dated 30 October 2013 – Approval of 17 May 2013)
Page 47/47