IBO 2018 - Theoretical Exam 1
IBO 2018 - Theoretical Exam 1
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IBO 2018: Theoretical exam 1
Duration
This exam lasts three hours.
Topics
Q 1‒15 Biochemistry and molecular biology
Q 16‒26 Animal physiology and anatomy
Q 27‒36 Plant physiology
Q 37‒47 Ecology and evolution
Marking
For questions with four statements the following marking scheme is used:
Number of correct answers 0 1 2 3 4
Points 0 0 0 0.5 1.0
For questions with five statements the following marking scheme is used:
Number of correct answers 0 1 2 3 4 5
Points 0 0 0 0.25 0.75 1.25
Q. 1 Pathway Reconstruction
Compounds X and Y are precursors in the pathway of Z synthesis. Z is essential for growth. Wild type
(WT) Neurospora are prototrophs, meaning that they can grow on minimal medium (MM).
Growth Experiment: Four Z- neurospora mutants were isolated, and results of experiments with these
mutants are presented below (+ = growth, − = no growth).
Accumulated compound
Cell Type MM MM + Y MM + X MM + Z
during growth in MM
WT + + + +
Mutant 1 − − + + Y
Mutant 2 − − − + X
Mutant 3 − − − + X
Mutant 1 −
Mutant 2 + − Mutant 3
+ − −
Mutant 4 − − − −
Mating Experiment: Mutant strains were mated and % prototrophs among spores of each mating
were determined. Results were as follows.
Mating % prototroph spores
True False
A. The mutations in the mutated strains were distributed in two genes
B. Considering all the mutant strains, at least five different sites of the Neurospora
genome were mutated in one or more strains.
C. At least two of the mutant strains were double mutants (i.e. > 1 site was mutated in each of
these strains).
D. The mutation site of Mutant 3 is positioned between the mutation site in
E. It is expected that 25% of spores resulting from mating between Mutant 2 and wild type
strain will be prototrophs.
Q. 2 DNA Barcoding
Taxonomy has traditionally been based on morphology. DNA Barcoding is a new approach that aims
to allow accurate and relatively simple species identification based on the nucleotide sequence of a
650-bp fragment of the mitochondrial COI gene. The Kimura-2 parameter (K2P) distance is a widely
accepted index that reflects the divergence between two DNA sequences.
In a study on fish inhabiting the Persian Gulf, over 150 individuals were studied that, based on
morphology, represented 83 species. The average of intraspecific K2P distances based on COI
sequence was calculated to be 1.15%. The average distance reported in various reputable fish studies
in the world has been 0.25%–0.45%.
In a study on fish inhabiting the Gulf of Mexico, again over 150 individuals were studied. Based on
morphology, these fish represented 76 species, 56 genera, 32 families, 11 orders, and 2 classes.
The table below presents K2P distances between specimens at different taxonomic levels.
True False
A. The evolutionary rate of sequence change in a DNA fragment chosen for DNA
barcoding should certainly be more rapid than the evolutionary rate of change in
the H4 histone encoding gene.
B. The high average COI intraspecific K2P distance of the Persian gulf study
compared to other fish studies could be explained by existence of relatively
diverged clusters within one or a few of the nominal species studied (i.e. those
based on morphology).
C. The data in table support the proposal that species identification of fish can be
made on the basis of COI fragment sequences.
D. Table 1 suggests that COI based barcoding is not appropriate for genus
identification.
Q. 3 Genetic Divergence
Taxonomy has traditionally been based on morphology. DNA Barcoding is a new approach that aims
to allow accurate and relatively simple species identification based on the nucleotide sequence of a
650-bp fragment of the mitochondrial COI gene. The Kimura-2 parameter (K2P) distance is a widely
accepted index that reflects the divergence between two DNA sequences.
Selected results relating to 16 species from five barcoding studies from different regions of the world
are presented below. Three types of divergence values were calculated, global, intraregional, and
interregional distances. Global divergence which is commonly used was the average of all pairwise
comparisons of sequences belonging to the same species regardless of location of origin.
Intraregional divergences were calculated by averaging the distances of all sequences belonging to the
same species from the same location. Finally, interregional distances were calculated by averaging all
distance values obtained from comparing each of the sequences from one location with all sequences
of the same species in a second location.
Results of three calculations (i, ii, and iii) are given below:
i. The average standard deviation (SD) of 17 intraregional comparisons pertaining to 10
species was 0.11% (minimum: 0%; maximum: 0.3%). The SD of divergences of an 18th
intraregional comparison pertaining to one of these species was 1.26%.
ii. The intraregional divergence of Argyrops spinifer specimens from India was 0.20%, and
the interregional divergence of specimens from India and South Africa was 0.13%.
iii. Global divergence for Platycephalus indicus was 9.46%. Interregional divergences for
this species were as follows:
India/China 15.78% China/Australia 12.05%
True False
A. The SD value of the 18th comparison in calculation (i) above is consistent with
the suggestion that the fish compared in fact do not all belong to the same
species.
B. The K2P divergence values reported in calculation (ii) is consistent with the
proposal that A. spinifer populations of India and South Africa arose from a
common source population, but that there is greater variation in the ecological
niches of India as compared to South Africa.
C. The divergence values in calculation (iii) show that, as compared to
interregional divergence values, global divergence values are more informative
of extent of divergence that exists for P. indicus in the world.
D. With reference to calculation (iii), the difference between global divergence
value (9.46%) and average of interregional divergence values (11.58) can be
explained by unequal number of specimens from different regions.
Q. 4 Pulse-Chase Experiment
Pulse- chase experiments performed in cells are experiments in which cells are first exposed to
labelled precursors of specific molecules for a short period of time (the pulse), unincorporated labelled
precursors are then washed away, and presence of label in molecules of interest are followed through
time (the chase). In an experiment designed to study gene expression, cells were exposed to labelled
UTP during the pulse, and results of the chase part of the experiment are summarized in the figure
below:
True False
A. Based on the data presented, most (~90% of mass) of RNA that is synthesized
in the nucleus is degraded in the nucleus without ever entering the cytoplasm.
B. Based on data presented, the complexity of RNA (which refers to number of
different sequences) in the nucleus is higher than in the cytoplasm.
C. Assuming that introns constitute 60% of primary transcripts, splicing can
account for the observed difference in amount of label in the nucleus at start of
chase and amount of label in the cytoplasm after eight hours of chase.
D. It is expected that chases of longer than 8 hours would have ultimately shown a
much higher amount of label in the cytoplasm than seen at 8 hours.
Q. 5 Fluorescence Quenching
Enzyme activity usually correlates with its conformational flexibility, such that higher flexibility
(lower rigidity) is usually accompanied with higher activity. Tryptophan residues which emit
fluorescence are most commonly located within the nonpolar interior environment of the proteins. An
excellent way to experimentally determine the exposure of tryptophan residues to solution is by
measuring the quenching (decrease) of their fluorescence. The effect of mutations on the accessibility
iodide (KI). Iodide ions selectively quench fluorescence emitted by exposed tryptophan residues.
In the experiment whose results are presented below, fluorescence quenching on equal amounts of
three mutated forms of an enzyme (mutant forms 1, 2, and 3) was measured after addition of various
concentrations of KI (0–0.6 M). Excitation and emission wavelengths used were specific for
tryptophan. Quenching data were analysed in terms of the Stern–Volmer constant, K SV, which can be
calculated from the ratio of the unquenched and the quenched fluorescence intensities, F o/F, using the
relationship
𝑭𝟎/𝑭 = 𝟏 + 𝑲SV[𝑸]
Q. 6 AntimiRs
MicroRNAs are short non-coding RNAs expressed in various tissues and cell types that suppress the
expression of target genes. MicroRNAs involved in cancer are called oncomiRs. Inhibition of
oncomiRs using antisense oligomers (that is, antimiRs) is an evolving therapeutic strategy. However,
the in vivo efficacy of current antimiR technologies is hindered by physiological and cellular barriers
for delivery into targeted cells.
A novel antimiR delivery platform that specifically targets tumour microenvironment makes use of
synthetic molecules called peptide nucleic acid (PNA) antimiRs attached to a peptide called pHLIP.
PNA antimiRs are antimiRs whose nucleotides are connected by peptide bonds instead of the normal
phosphodiester bonds. The structure of pHLIP is pH dependent. At low pH, a transmembrane
structure is induced in pHLIP that facilitates transport of attached PNA into tumour cells (Fig. 1).
pHLIP mediated transport of antimiR-155 effectively inhibited the miR-155 oncomiR in cultured cells
(Fig. 2).
True False
A. Based on the data, you can conclude the liver does not function in clearing the
pHLIP-antimiRs from the body.
B. At pH less than 7, pHLIP inserts into the lipid bilayer and thus facilitates
delivery of attached antimiR-155.
C. The acidic microenvironment of tumours is responsible for intracellular release
of antimiR-155.
D. The antimiR cargo will be trapped within endosomes.
Q. 7 Steroid Hormones
Steroid hormones affect expression of primary response genes and secondary response genes in cells
as schematically shown in the figure below.
True False
A. Inhibition of DNA replication simultaneously with hormone administration
Q. 8 Uncoupling Drugs
Drugs that render the inner mitochondrial membrane permeable to H + are called “uncouplers”.
True False
A. These drugs will increase oxygen consumption.
D. These drugs may cause death upon overdose because of severe weight loss.
E. These drugs may cause death upon overdose because of severe ATP loss.
Some restriction enzymes have different recognition sequences but create the same sticky ends, as
shown below for SalI and XhoI.
The following gel electrophoresis image shows linearized DNAs obtained after complete restriction
enzyme digestion of non-recombinant (empty vector) and recombinant (containing gene X)
expression plasmid vectors. The expression vector includes a strong promoter near its cloning site.
The insert of the recombinant plasmid was a product of SalI digestion. The insert was ligated into the
vector which had been cut with XhoI.
True False
A. The data indicate that two copies of the insert were cloned in the expression
vector.
B. Half of the clones are expected to be able to transcribe the mRNA of gene X.
D. The 2 kb fragment seen in the gel can be used as probe to screen for the
recombinant vectors
E. If the insert produced by SalI digestion was ligated into a vector that had been
cut with both XhoI and SalI enzymes and the recombinant plasmid subsequently cut
with XhoI, a 4 kb product would be obtained.
True False
A. If mutations of m1 and m2 were in the same gene, it is possible that all products
of meiosis of cross 3 will be unhappy.
B. If 1 happy to 3 unhappy yeasts were produced from meiosis of cross 3, then the
mutation of m1 and the mutation of m2 were in different genes.
C. If 1 happy to 1unhappy yeasts were produced from meiosis of cross 3, then the
mutation of m1 and the mutation of m2 can suppress each other.
D. If the experiments were performed with various pairs of unhappy mutants, the
most frequently observed ratio of happy to unhappy yeasts among meiosis products
of cross 3 would be 1:3.
Q. 11 Thalassemia
Thalassemia, the most common inherited disorder of hemoglobin, is caused by loss or substantial
reduction of one of the globin chains. This results in lowered levels of functional hemoglobin and
decreased function of red blood cells, which lead to anemia. In α-thalassemia, the α chain of
hemoglobin is not produced in sufficient quantity and consequently, hemoglobin tetramers form
that contain only the β chain. In β-thalassemia, the β chain of hemoglobin is not produced in
True False
A. Higher incidence of severe β-thalassemia compared to severe α-thalassemia
could be explained by difference in copy numbers of α and β genes.
B. α-globin/β-globin ratio is an appropriate marker for screening of β-thalassemia.
Reduced glutathione (GSH) acts to neutralize reactive oxygen species (ROSs) in the body. The
reaction for GSH generation is shown below:
True False
A. The high prevalence of G6PD deficiency in regions with high incidence of
malaria can be explained by high susceptibility of Plasmodium falciparum to
oxidative agents.
B. Increase in levels of cell division is accompanied by increase in the ratio of
fructose-6 phosphate/ ribose-5 phosphate production by the pentose phosphate
pathway.
C. G6PD deficiency affects catabolism more than anabolism in individuals with
the deficiency.
True False
A. After replication has finished, Pol III* dissociates from its original β-clamp.
Q. 14 Para-nitrophenol
The enzymatic reaction below includes two steps.
para-nitrophenyl-peptide → para-nitrophenol + peptide
Para-nitrophenol has maximum absorbance at wavelength 405 nm. The progress curve of the reaction
is shown below.
True False
A. The release of para-nitrophenol occurs during the first step of enzymatic
mechanism.
B. The rate limiting step of this enzymatic mechanism is the second step.
C. Enzyme activity can be determined from the slope of region “a” of the curve.
The Krebs cycle is below. Note that most α-amino acids can be directly converted into their
corresponding α-keto acid by transamination reaction as also shown below.
True False
A. Upon introduction of the aspartate into the Krebs cycle, label will first appear in
oxaloacetate.
B. Upon introduction of the alanine into the Krebs cycle, label will first appear in
citrate.
C. Labelled alanine will yield 14-CO2 during the first turn of the cycle.
D. Labelled glutamate will yield 14-CO2 in the second turn of the cycle.
Q. 16 Pain Transmission
In figure a, the pain and temperature sensory pathway is depicted. The first-order neuron enters the
spinal cord and forms a synapse with the second-order neuron, which its axon ends in the thalamus.
The third-order neuron transmits the information to the brain cortex. Figure b shows the vibration and
proprioception (joint position) sensory pathway. The axon terminals of the first-order neurons are
located in the brain stem and form synapses with second-order neuron, which crosses the midline and
their axons end in the thalamus. finally, the sensory information is conducted to the cortex via the
third-order neurons.
True False
A. The patient has impaired temperature sensation in right hand.
C. The patient has impaired joint position sensation in left leg and temperature
sensation in right leg.
D. The patient has impaired pain sensation in left leg.
Perception of the emotional stimuli is a reciprocal process between the brain and the heart. In an
experimental task, pictures depicting facial expressions were quickly and sequentially presented to the
subjects at different phases of the cardiac cycle. Participants then rated the emotional intensity of the
faces in a scale of 0 to 100. Given the role of the amygdala in the process of fear, the amygdala
response was measured in normal individuals and subjects with pure autonomic failure (PAF) at the
time of presenting facial expression images (using the fMRI method). The results of the study are as
follows. (Consider p < 0.05 indicates significant difference between groups).
Q. 18 Light Refraction
When a light beam enters another medium in an oblique angle, its direction will change. This
phenomenon is called light refraction. The amount of this change in beam direction can be
calculated by Snell’s law, where “n” is the refraction index.
This phenomenon is also the principle of conversion and diversion of beams in lenses. Power of a lens
can be calculated by the following formula. Optical power of a lens demonstrates the degree of
convergence or divergence of the light beam.
(D: Power of lens, r: radius of curvature)
𝐷 = (𝑛1 − 𝑛2)/𝑟
The figure below shows the eye structure of Anableps sp. which can simultaneously see objects in
both aquatic and terrestrial scenes.
A) Anableps sp. B) Eye of Anablebs sp. C) Schematic diagram of Anableps. sp. eye
True False
A. The largest refraction index belongs to the lens.
C. The light beam would be more divergent when passing through the aqueous
humour than the cornea.
D. Considering the different diameters of the lens of Anableps fish, light ray 1 and
2 belong to terrestrial and aquatic spaces, respectively.
True False
A. In primary hypothyroidism, the thyroid function test would be like below:
TSH increased T4 decreased T3RU decreased
B. A person who uses OCP and is euthyroid (normal functioning of thyroid) the
thyroid function test would be like below:
D. In secondary hypothyroidism (pituitary dysfunction) the thyroid function test would be like
below:
Q. 20 Sperm Motility
Spermatozoa motility is essential for the fertilization of an oocyte. In most animals, including fish,
spermatozoa are immotile in the male reproductive organ (testis or sperm duct). Spermatozoa motility
is triggered after being ejaculated into the female reproductive tract (in animals with internal
fertilization) or after it is released into the aquatic environment (in animals with external fertilization).
Ionic composition and osmolality of freshwater, seawater, and seminal plasma of pike (Esox lucius),
sturgeon (Acipenser ruthenus), and cod (Gadus morhua) are shown in the table. Pike and sturgeon
spawn in freshwater, and cod spawns in seawater.
True False
A. Sperm motility in pike and cod become triggered in a hypo-osmotic and
hyperosmotic environment, respectively.
B. Under physiological condition, osmolality is the main factor that inhibits sperm
motility initiation in sturgeon.
C. Sperm motility in sturgeon become triggered after discharged into a
hypoosmotic environment with lower K+ ions.
D. Environmental osmolality is a key signal to trigger sperm motility initiation
after release from reproductive system into aquatic environment in marine fish
True False
A. Based on Figure above, performing the test in warmer places will increase the
specificity.
B. When a test becomes more sensitive, the specificity of the test will increase.
D. To
testrule
without a disease,
high it is better to use a test with high sensitivity instead of a
specificity.
True False
A. Figure “a” is the cross section from region “1 “.
Q. 23 Heterotopic Grafting
The early embryonic cells pass through two stages of differentiation: specification and determination.
True False
A. These data supports that the fate of the determined cell is not reversible.
C. If the graft is removed at the late stage and cultured in isolation, it will give rise
to the red spinous sphere(shown in the picture)
D. If the graft is removed at the late stage and cultured in the presence of the eye
inducing factors, the eye-like structure will be developed.
In 1876, Van Beneden, found a group of microscopic ciliated wormlike organisms that inhabited the
renal sacs of cephalopods, mainly octopuses and cuttlefishes and named them as Dicyemids.
Biologists have been fascinated because of their highly-simplified body organization and complex life
cycles of asexual (under normal condition producing vermiform larva in host kidney) and sexual
(under crowded condition producing infusoriform larva excreted in host urine). These ciliated animals
are composed of approximately 20-30 (or 40) cells arranged in two layers, and they lack coeloms,
circulatory systems, and other differentiated tissues and their embryos employ spiral cleavage. Due to
their simple body plans, it can be considered as intermediates between the Protozoa and the Metazoa.
True False
A. Based on the above explanations, infusiform larva is a mean of dispersal for
these animals.
B. Based on the above molecular data, these animals are missing link between
Metazoa and protozoa.
C. Based on the data, these described animals faced a regression evolution during
its evolutionary history.
D. Based on the given data, it is more likely that Dicyemida is more closely related
to Mollusca than to Ecdysozoa.
The figures 1-4 illustrate the schematic cross-sectional anatomy of bones and flying muscles of a bird
and a bat.
True False
A. Figure 1 and 2 are the bat structures.
C. In figure 1 and 2 the only mobile joint, which is involved in wing’s flapping is
scapula-humoral.
D. The muscle supracoracoideus in figure 3, is responsible for downstroke
movement in flapping cycle.
Q. 27 Anthocyanins
Anthocyanins are vacuolar pigments that consist of two phenyl rings and one heterocyclic ring. They
are the source of red to blue colours of flowers and fruits. Changes of vacuolar and soil pH, formation
of complexes with metal ions, and introduction of –OH groups particularly at 3΄ and 5΄ positions and
subsequent methylations at these positions all result in production of variations in the colours of the
pigments.
True False
A. Pigment 3 is the most abundant pigment in flower E.
Q. 28 Boron as Micronutrient
Boron (B) is an essential micronutrient for plants. Its uptake, transport, and function in plants appear
to be dependent on the formation of B complexes with sugars, such as sorbitol in phloem sap (Fig. 1)
Table 1. Changes of the pH values of the pollen culture media containing different sugars
after adding boric acid at different concentrations (first row).
H3BO3 (mM) 0 5 10 20
Sucrose 5.2 5.2 5.0 4.9
Glucose 5.2 4.7 4.5 4.3
Fructose 5.0 3.7 3.5 3.4
True False
A. Growth inhibition of pollen tubes by high concentrations of B is more
pronounced in medium containing sucrose as compared to fructose.
B. At low B concentrations (5 mM), growth inhibition of pollen tubes was more
pronounced in medium containing glucose as compared to the other sugars.
C. Inhibitory effects of fructose on pollen tube growth increased with increasing
concentrations of B.
D. Based on effects of sugar on pH of the media, relative levels of sugar-B
complex formation is as follows: Sucrose ˂ Glucose ˂ Fructose.
True False
A. Between two major inorganic nitrogen forms, NH 4+ and NO3−, the former is
mobile in the plant, while the latter is not.
B. Immediately after recognition of plant by bacteria and recognition of bacteria
by host plant, a calcium spike occurs in the root cells.
C. The plant hormone cytokinin is needed for initiation of nodule formation.
Q. 30 Photosynthesis
Arabidopsis thaliana was used in a study on photosynthesis. A. thaliana plants of same age, with leaf
blades of equal shape and size, were placed under various light sources that emitted different colours.
Three plants were exposed to each light source. The groupings of were as follows:
True False
A. The plants of group “a” showed the highest photosynthesis rate.
B. Among the various groups, the light compensation point for CO 2 fixation was
the lowest for group “b”.
C. The biomass of group “d” plants was higher than group “c” plants.
D. At light intensities just above the compensation point, the rate of photosynthesis
of group “e” is expected to increase linearly with light.
True False
A. They do not have xylem as they can absorb water from all of their surfaces.
B. Given that some species do have stomata, their opening and closing of the
stomata is not expected to be driven by circadian rhythm.
C. These plants are heterophyllous, with thin and dark green leaves.
An important question in the evolution of angiosperms is the influence of life form and habit on
speciation and extinction. In a phylogenetic study of the morphologically highly diverse plant order
Saxifragales, the effect of habit and life history on speciation and extinction was investigated. Figures
A–F illustrates estimates of speciation (λ) and extinction (μ) rates in annual, perennial, herbaceous,
and woody lineages (Soltis et al., 2013). The results are given as posterior probability density, which
reflect the uncertainty associated with parameter estimates. Dashed lines represent the median values
of each distribution. Net diversification rate r = λ − μ. Posterior probability density is a function that
use to specify the probability of the random variable falling within a particular range of values.
Range of value, as oppose to taking on any one value.
True False
A. The phylogenetic tree suggests thatNemesia originated during the Miocene, but
the majority of extantNemesia species radiated during the Pliocene (Pl.) and
Quaternary (Qu.)
B. The phylogenetic tree suggests that the most recent common ancestor of
Nemesia had an annual life form.
C. The phylogenetic tree does not show shift from annual to perennial habi
t.
D. Diascia rigescens is the ancestral species of all other taxa in this phylogenetic
tree.
Q. 34 Polyploidy in Veronica
Correlation between genome size in polyploid and diploid lineages and life history and occupation of
alpine habitat for the genus Veronica (Plantaginaceae) were investigated (Meudt et al., 2015). The
True False
A. Horizontal gene transfer might have resulted in transfer of certain genes of the
harvested chloroplast into the genome of some slugs, particularly in slugs that
have maintained chloroplasts for long periods of time.
B. Activity of lysosomal enzymes in host cells must be minimal in order to prevent
chloroplast ingestion.
C. The sea slugs with algal chloroplasts also need algal mitochondria to ensure a
source of energy during periods of starvation.
D. Nuclear algal RNA present in ingested chloroplasts could somehow persist for
as long as one year in the sea slug.
Q. 36 Angiosperm Morphology
The following figure shows two histological sections of an organ from an angiosperm plant. The tissue
section on the left was prepared from the medial part of the organ, whereas the section on the right
was from the lateral part.
True False
A. The sections were prepared from a monocotyledonous plant.
D. The vascular bundles are of bicolateral type, meaning that phloem is present on
both sides of xylem.
B.
Bighorn sheep (Ovis canadensis), the males of which are famous for their magnificent curl of horns,
live in North America. Their hunting was restricted in 1970. This restriction made trophy rams (males
with large and fully-curved horns) extremely valuable, sometime costing over $100,000 to be hunted.
Funds raised in this way were used for preserving bighorn habitats.
Coltman and his colleagues (2003) showed that there is a relationship between year and decrease of
mean mass and mean horn length of bighorn sheep in Alberta, Canada where trophy hunting was
conducted over 30 years.
True False
A. The observed changes in the mean mass and horn length imply a reduction in
the bighorn sheep population.
B. Phenotype-based selective harvest can change population characters if it targets
heritable traits.
C. If variation in horn size is mainly due to additive genetic interactions, the
heritability (the portion of the phenotypic variance explain by genotype
variance) for this trait would decrease over time.
D. By hunting males with longest horns, the variance in the reproductive success of
the males increases.
E. The trends establish genetic correlation between horn length and mass.
A B A crossed with B
An. albitarsus An. daeneorum Only males are sterile.
An. crucians An. bradleyi Only males are sterile.
An. freeborni An. occidentalis Only males are sterile.
An. freeborni An. atroparvus Only males are sterile.
True False
A. If the males in genus Anopheles were under strong selection, we would expect
the same pattern of hybrid sterility as presented here.
B. The hybrid sterility patterns observed in both genera are consistent with the
idea that alleles involved in hybrid sterility are recessive.
C. If the pattern of sterility in Aedes were identical to that of Anopheles, it would
disprove Haldane’s rule.
D. The pattern of hybrid sterility in Aedes suggest variation in Y chromosome
functionality in this genus.
Q. 39 Selection in Humans
Bustamante et al. (2005) analysed the pattern of polymorphism in the human genome by sequencing
over 11,624 genes from 39 humans. The table below shows the distributions of synonymous (changes
that does not result in amino acid replacement) and non-synonymous (changes that result in amino
acid replacement) single nucleotide polymorphism (SNPs - variation within species):
In the table, divergence refers to the fixed differences between the humans in this study and the
chimpanzee genome.
True False
A. Greater ratio of non-synonymous to synonymous SNPs relative to ratio of
nonsynonymous to synonymous divergent sites suggest the effect of negative
selection in human.
B. The ratio of synonymous/non-synonymous SNPs is higher in genes involved in
chromatin structure.
C. Arms races caused by host-specific pathogen would decrease the ratio of
synonymous/non-synonymous substitutions in divergent sites between human
and chimpanzee.
D. SNPs present within chimpanzee population cannot result in any level of
reproductive isolation in chimpanzee population.
Q. 40 Evolution of Sex
The evolution of sexual reproduction has remained in certain aspects a puzzle which is yet to be fully
pieced back together. Over the years many hypotheses have been proposed to explain this
phenomenon.
True False
A. The effect of sexual reproduction on the association between alleles is expected
to improve the fitness of co-adapted genes.
B. Given that the majority of mutations are deleterious, sex is expected to counter
the loss of mutation-free individuals in small populations.
C. Avoiding inbreeding in sexually-reproducing organisms is expected to be
advantageous when deleterious mutations are co-dominant.
D. One would expect a greater proportion of sexually reproducing species in stable
regions, as compared to unstable regions.
Boxplots show the relative abundances of three bacterial groups from individuals with
colorectal cancer (CRC), individuals with polyps (the intermediate stage between healthy
and cancerous tissue which does not always turning to CRC) and healthy control (HC).
An asterisk represents the significant p value which represented as ***p value < 0.001;
**p value < 0.01; *p value < 0.05; p value > 0.05.
True False
A. The microbiota compositional differences between patients with CRC and the
control are secondary to the onset of cancer.
B. Changes in the abundance of the bacteria group 2 compared to the control are
restricted to polyp.
C. Any bacterial group that populates the gut is in association with an increased
risk of CRC.
D. The polyp-associated microbiota can be used as an indicator for individuals
with higher risk of developing CRC.
Q. 42 Trophic Relationships
One of the basic ways to illustrate trophic relationship in an ecosystem is to use pyramids of energy
and biomass, which are the stack of rectangles. Each represents the amount of energy or biomass
within one trophic level. We know a proportion of energy and biomass is lost from the ecosystem
when transferring from one to the next level. Therefore, the size of each rectangle decreases when we
move from one level to the level above it.
True False
A. Inverted biomass pyramids are caused by low density of heterotrophs at any
given time.
B. We can't have regular energy pyramid when biomass pyramid is inverted, thus
the energy pyramid for the inverted biomass must be inverted as well.
C. Biomass of autotroph are usually greater than biomass of heterotroph in
terrestrial ecosystems.
D. Given that phytoplankton has more rapid turnover, the biomass pyramid is more
likely to be inverted.
Effect of pitchers starving and neighbour removal on production of total dry mass in
pitchers’ roots. Error bars are ±1 standard error (Pitcher open means the pitcher plant can
easily feed. after Brewer, 2003).
True False
A. When using the same resources, inferior competitors fail to coexist with
superior competitors.
B. Inferior competitors can coexist with superior competitors if periodic
disturbance remove or reduce population of superior competitors.
C. Intense competition can result in competing species to diversify so they can
coexist while reducing the intensity of competitions.
D. When pitcher plants are starved, their ability to coexist with their superior
competitor is significantly decreased.
Q. 44 Species Diversity
Regional species diversity in ecosystems usually increases with primary productivity while local
species diversity does not show any defined relation with primary productivity. It suggests that
different processes have distinctive influence on species diversity at regional and local scale.
True False
A. Predators or pathogens specific to the dominant species will decrease αdiversity.
B. Increasing CNDD has a homogenizing effect on community composition
among sites.
C. Regions with weak HNDD are expected to have higher degree of community
differentiation.
D. Environmental perturbation acts in a fashion similar to effect of increasing
CNDD on alpha and beta diversity.
In Adélie penguins when both parent leave the nest to find food, three-weeks-old chicks group
together for protection. In this species, social defence behaviour can occur in unusual ways. When
adult Adélie penguins reach the coast, they gather in groups before diving into the ocean, where
usually their predator (leopard seal) could be lurking. The penguins have two choices, first to dive
together, or wait until one of penguins dives so they could make sure if there is a predator or not.
True False
A. This is an example of altruism behaviour as the penguin that jump first could be
hunted by possible predators while transferring its genes by helping its relatives.
B. According to above example we can say one individual have influence on what
other penguins are doing.
C. If a new strategy arose which would make a penguin trip another one into the
ocean without retaliation from others, everyone in the population would adopt
this new strategy in the long run.
D. A mutation that results in postponing to jump as long as possible would
eventually go to fixation.
Cooperation is a complicated behaviour that has evolved in animals. Conditional cooperation, such as
direct and indirect reciprocity and partner choice, are some of these complicated behaviours. The
simple rule which can illustrate how such behaviour evolves is the correlation between the behaviour
of interacting individuals (graph below). In fact, such correlation results in cooperative individuals
receiving more cooperation, so if there is a cheater, it receives less cooperation, which is a kind of
punishment.
True False
A. Conditional strategies and mechanisms that enforce cooperation make the
evolution of deception less likely.
B. Although overall net benefit of the cooperative behaviour is higher than the cost
of being deceived, the existence of defectors doesn’t allow cooperation to
persist.
C. We can expect deception to evolve as long as it does not significantly increase
the cost of cooperation.
D. Deceptive behaviour can occur only in novel habitats as there is no time to
adapt to the new environmental conditions.
E. The relationship between cooperativeness and deception rate in primates can be
Q. 47 Senescence
Organismal senescence is the aging of the whole organism. It is a widespread phenomenon in nature
but the exact etiology is still largely unclear. An evolutionary theory was proposed by George C.
Williams which involves the following assumptions:
1. Soma (referring to all somatic cells in the body) is essential for reproductive success, but
it does not pass on to the offspring.
2. Alleles are affected by Natural selection.
3. Pleiotropic genes can have opposite effects on fitness at different ages or somatic
environments.
4. The probability of reproduction decreases with increasing age.
Williams suggested the following example: Perhaps a gene was selected for because it codes for
calcium deposition in bones, which promotes juvenile survival, but the same gene promotes calcium
deposition in arteries.
True False
A. Lower adult death rates can be associated with lower rates of senescence,
according to the theory.
B. Where there is a sex difference, the sex with higher rate of decrease in fecundity
after maturation (but with equal death rate to the other sex) should undergo the
more rapid senescence, according to the theory.
C. The frequencies of an allele in a gene that behaves similar to the
aforementioned calcium deposition gene in a cohort will be smallest at early age
and greatest at late age.
D. This model views senescence as an adaptation.
End