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The document discusses the structure of biochemistry including biomolecules, metabolism, and bioenergetics. It also covers cellular organization, fundamental processes like DNA replication and RNA processing, cell communication, and plant and animal physiology.

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Niharika Das
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0% found this document useful (0 votes)
41 views

Csir Print

The document discusses the structure of biochemistry including biomolecules, metabolism, and bioenergetics. It also covers cellular organization, fundamental processes like DNA replication and RNA processing, cell communication, and plant and animal physiology.

Uploaded by

Niharika Das
Copyright
© © All Rights Reserved
Available Formats
Download as PDF, TXT or read online on Scribd
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1.

BIOCHEMISTRY
Structure of atoms, molecules and chemical bonds.
B Composition, structure and function of biomolecules (carbohydrates,
Lipids,
Proteins,
nucleic acids
vitamins).
Stablizing interactions (Van der Waals, electrostatic, hydrogen bonding, hydrophobic
interaction, etc.).
D Principles of biophysical chemistry (pH, buffer, reaction kinetics, thermodynamics,
colligative properties).
E. Bioenergetics,
glycolysis,
oxidative phosphorylation, coupled reaction, group transfer, biological energy
transducers.
F. Principles of catalysis, enzymes and enzyme kinetics, enzyme regulation,
mechanism of enzyme catalysis, isozymes
G. Conformation of proteins secondary structure, domains, motif and folds)
(Ramachandran plot
H. Conformation of nucleic acids (helix (A, B, Z), t-RNA, micro-RNA). I. Stability of
proteins and nucleic acids.
J. Metabolism of carbohydrates, lipids, amino acids nucleotides and vitamins
2.CELLULAR ORGANIZATION

A) Membrane structure and function (Structure of model membrane, lipid bilayer and
membrane protein diffusion,
osmosis, ion channels, active transport, membrane pumps,
mechanism of sorting and regulation of intracellular transport,electrical properties of
membranes).
B) Structural organization and function of intracellular organelles (Cell wall, nucleus,
mitochondria, Golgi bodies, lysosomes, endoplasmic reticulum, peroxisomes,
plastids, vacuoles, chloroplast, structure & function of cytoskeleton and its role in
motility).
C) Organization of genes and chromosomes
(Operon,
unique and repetitive DNA, interrupted genes, gene families, structure of chromatin
and chromosomes, heterochromatin, euchromatin, transposons).
D) Cell division and cell cycle (Mitosis and meiosis, their regulation, steps in cell
cycle,
regulation and control of cell cycle).
3.FUNDAMENTAL PROCESS
DNA replication, repair and recombination (Unit of replication, enzymes involved,
replication origin and replication fork, fidelity of replication, extrachromosomal
replicons,
DNA damage and repair mechanisms, homologous and site-specific recombination).
B) RNA synthesis and processing (transcription factors and machinery, formation of
initiation complex, transcription activator and repressor, RNA polymerases, capping,
elongation, and termination,
RNA processing,
RNA editing,
splicing, and polyadenylation,
structure and function of different types of RNA,
RNA transport
Protein synthesis and processing (Ribosome, formation of initiation complex,
initiation factors and their regulation, elongation and elongation factors, termination,
genetic code,
aminoacylation of tRNA, tRNA-identity, aminoacyl tRNA synthetase, and translational
proof-reading,
translational inhibitors,
Post- translational modification of proteins).
Control of gene expression at transcription and translation level (regulating the
expression of phages, viruses, prokaryotic and eukaryotic genes
, role of chromatin in gene expression and gene silencing). 4. Cell communication
and cell signaling
Host parasite interaction Recognition and entry processes of different pathogens like
bacteria, viruses into animal and plant host cells, alteration of host cell behavior by
pathogens, virus-induced cell transformation, pathogen-induced diseases in animals
and plants, cell-cell fusion in both normal and abnormal cells.
4.Cell Communication and Cell Signaling
Cell signaling Hormones and their receptors, cell surface receptor, signaling through
G-protein coupled receptors, signal transduction pathways, second messengers,
regulation of signaling pathways, bacterial and plant twocomponent systems, light
signaling in plants, bacterial chemotaxis and quorum sensing.
Cellular communication Regulation of hematopoiesis, general principles of cell
communication, cell adhesion and roles of different adhesion molecules, gap
junctions, extracellular matrix, integrins, neurotransmission and its regulation.
D) Cancer Genetic rearrangements in progenitor cells, oncogenes, tumor suppressor
genes, cancer and the cell cycle, virus-induced cancer, metastasis, interaction of
cancer cells with normal cells, apoptosis, therapeutic interventions of uncontrolled
cell growth.
5.Developmental Biology
Basic concepts of development : Potency, commitment, specification, induction,
competence, determination and differentiation; morphogenetic gradients; cell fate
and cell lineages; stem cells; genomic equivalence and the cytoplasmic
determinants; imprinting; mutants and transgenics in analysis of development
B) Gametogenesis, fertilization and early development: Production of gametes, cell
surface molecules in sperm-egg recognition in animals; embryo sac development
and double fertilization in plants;
zygote formation, cleavage, blastula formation, embryonic fields, gastrulation and
formation of germ layers in animals;
embryogenesis, establishment of symmetry in plants; seed formation and
germination.
C) Morphogenesis and organogenesis in animals : Cell aggregation and
differentiation in Dictyostelium;
axes and pattern formation in Drosophila, amphibia and chick; organogenesis –
vulva formation in Caenorhabditis elegans, eye lens induction,
limb development and regeneration in vertebrates;
differentiation of neurons, post embryonic development- larval formation,
metamorphosis;
environmental regulation of normal development; sex determination.
Morphogenesis and organogenesis in plants: Organization of shoot and root apical
meristem; shoot and root development; leaf development and phyllotaxy; transition to
flowering, floral meristems and floral development in Arabidopsis and Antirrhinum
E) Programmed cell death, aging and senescence
4.PLANT PHYSIOLOGY
Photosynthesis - Light harvesting complexes; mechanisms of electron transport;
photoprotective mechanisms;
CO2 fixation-C3,
C4
CAM pathways.
B. Respiration and photorespiration – Citric acid cycle;
plant mitochondrial electron transport and ATP synthesis;
alternate oxidase;
photorespiratory pathway.
Nitrogen metabolism - Nitrate and ammonium assimilation; amino acid biosynthesis.
Plant hormones – auxin
Gibberellin
ABA
Brassenosteroids
Cytokinin
Ethyl neBiosynthesis, storage, breakdown and transport; physiological effects and
mechanisms of action.
Sensory photobiology - Structure, function and mechanisms of action of
phytochromes, cryptochromes and phototropins
stomatal movement
photoperiodism and biological clocks.
Solute transport and photoassimilate translocation – uptake, transport and
translocation of water, ions, solutes and macromolecules from soil, through cells,
across membranes, through xylem and phloem;
transpiration;
mechanisms of loading and unloading of photoassimilates.
Secondary metabolites - Biosynthesis of terpenes, phenols and nitrogenous
compounds and their roles.
Stress physiology – Responses of plants to biotic (pathogen and insects) and abiotic
(water, temperature and salt) stresses.
5.GENETICS
Mendelian principles : Dominance, segregation, independent assortment.
B) Concept of gene : Allele, multiple alleles,
pseudoallele,
complementation tests
Extensions of Mendelian principles : Codominance, incomplete dominance, gene
interactions
Pleiotropy
genomic imprinting
penetrance and expressivity
phenocopy
linkage and crossing over,
sex linkage, sex limited and sex influenced characters.
Gene mapping methods : Linkage maps, tetrad analysis, mapping with molecular
markers, mapping by using somatic cell hybrids, development of mapping population
in plants.
Extra chromosomal inheritance : Inheritance of Mitochondrial and chloroplast genes,
maternal inheritance.
Microbial genetics : Methods of genetic transfers – transformation, conjugation,
transduction and sex-duction,
mapping genes by interrupted mating, fine structure analysis of genes.
Human genetics : Pedigree analysis, lod score for linkage testing, karyotypes,
genetic disorders.
Quantitative genetics : Polygenic inheritance, heritability and its measurements
QTL mapping.
Mutation : Types, causes and detection, mutant types – lethal, conditional,
biochemical, loss of function, gain of function, germinal verses somatic mutants,
insertional mutagenesis.
Structural and numerical alterations of chromosomes : Deletion, duplication,
inversion, translocation,
ploidy and their genetic implications.
Recombination : Homologous and non-homologous recombination including
transposition.
6.DIVERSIRTY
Concepts of species and hierarchical taxa, biological nomenclature, classical &
quantititative methods of taxonomy of plants, animals and microorganisms.
Levels of structural organization: Unicellular, colonial and multicellular forms. Levels
of organization of tissues, organs & systems
Comparative anatomy, adaptive radiation, adaptive modifications.
Outline classification of plants, animals & microorganisms: Important criteria used for
classification in each taxon. Classification of plants, animals and microorganisms.
Evolutionary relationships among taxa.
Natural history of Indian subcontinent: Major habitat types of the subcontinent,
geographic origins and migrations of species. Comman Indian mammals, birds.
Seasonality and phenology of the subcontinent.
Organisms of health & agricultural importance: Common parasites and pathogens of
humans, domestic animals and crops.
Organisms of conservation concern: Rare, endangered species. Conservation
strategies.
7. ECOLOGY
The Environment: Physical environment; biotic environment; biotic and abiotic
interactions.
Habitat and Niche: Concept of habitat and niche; niche width and overlap;
fundamental and realized niche;
resource partitioning; character displacement.
Population Ecology: Characteristics of a population; population growth curves;
population regulation;
life history strategies (r and K selection);
concept of metapopulation – demes and dispersal, interdemic extinctions, age
structured populations.
Species Interactions: Types of interactions, interspecific competition, herbivory,
carnivory, pollination,
symbiosis.
Community Ecology: Nature of communities; community structure and attributes;
levels of species diversity and its measurement; edges and ecotones.
Ecological Succession: Types; mechanisms; changes involved in succession;
concept of climax. Ecosystem Ecology: Ecosystem structure; ecosystem function;
energy flow and mineral cycling (C,N,P);
primary production and decomposition;
structure and function of some Indian ecosystems: terrestrial (forest, grassland) and
aquatic (fresh water, marine, eustarine).
Biogeography: Major terrestrial biomes; theory of island biogeography;
biogeographical zones of India.
Applied Ecology: Environmental pollution; global environmental change; biodiversity:
status, monitoring and documentation;
major drivers of biodiversity change; biodiversity management approaches.
Conservation Biology: Principles of conservation, major approaches to management,
Indian case studies on conservation/management strategy (Project Tiger, Biosphere
reserves).
8.EVOLUTION AND BEHAVIOUR
A. Emergence of evolutionary thoughts Lamarck; Darwin–concepts of variation,
adaptation, struggle, fitness and natural selection;
Mendelism; Spontaneity of mutations; The evolutionary synthesis.
Origin of cells and unicellular evolution: Origin of basic biological molecules; Abiotic
synthesis of organic monomers and polymers;
Concept of Oparin and Haldane; Experiement of Miller (1953); The first cell;
Evolution of prokaryotes; Origin of eukaryotic cells; Evolution of unicellular
eukaryotes;
Anaerobic metabolism, photosynthesis and aerobic metabolism.
C. Paleontology and Evolutionary History: The evolutionary time scale; Eras, periods
and epoch; Major events in the evolutionary time scale;
Origins of unicellular and multi cellular organisms; Major groups of plants and
animals;
Stages in primate evolution including Homo. D.
Molecular Evolution: Concepts of neutral evolution, molecular divergence and
molecular clocks;
Molecular tools in phylogeny, classification and identification;
Protein and nucleotide sequence analysis; origin of new genes and proteins; Gene
duplication and divergence.
The Mechanisms: Population genetics – Populations, Gene pool, Gene frequency;
Hardy-Weinberg Law; concepts and rate of change in gene frequency through
natural selection, migration and random genetic drift;
Adaptive radiation; Isolating mechanisms; Speciation; Allopatricity and Sympatricity;
Convergent evolution; Sexual selection; Co-evolution.
Brain, Behavior and Evolution: Approaches and methods in study of behavior;
Proximate and ultimate causation; Altruism and evolution-Group selection, Kin
selection, Reciprocal altruism; Neural basis of learning, memory, cognition, sleep and
arousal;
Biological clocks; Development of behavior; Social communication; Social
dominance; Use of space and territoriality;
Mating systems, Parental investment and Reproductive success; Parental care;
Aggressive behavior; Habitat selection and optimality in foraging;
Migration, orientation and navigation; Domestication and behavioral changes.
9.METHODS
Microbial fermentation and production of small and macro molecules.
Application of immunological principles, vaccines, diagnostics.
Tissue and cell culture methods for plants and animals.
Transgenic animals and plants, molecular approaches to diagnosis and strain
identification.
Genomics and its application to health and agriculture,
including gene therapy.
Bioresource and uses of biodiversity.
Breeding in plants and animals,
including marker – assisted selection
. Bioremediation and phytoremediation
Biosensors
Molecular Biology and Recombinant DNA methods: Isolation and purification of RNA
, DNA (genomic and plasmid) and proteins, different separation methods
Analysis of RNA, DNA and proteins by one and two dimensional gel electrophoresis,
Isoelectric focusing gels.
Molecular cloning of DNA or RNA fragments in bacterial and eukaryotic systems.
Expression of recombinant proteins using bacterial, animal and plant vectors.
Isolation of specific nucleic acid sequences
Generation of genomic and cDNA libraries in plasmid, phage, cosmid, BAC and YAC
vectors.
In vitro mutagenesis and deletion techniques
, gene knock out in bacterial and eukaryotic organisms.
Protein sequencing methods
detection of post translation modification of proteins.
DNA sequencing methods, strategies for genome sequencing.
Methods for analysis of gene expression at RNA and protein level, large scale
expression, such as micro array based techniques
Isolation, separation and analysis of carbohydrate and lipid molecules RFLP, RAPD
and AFLP techniques
Histochemical and Immunotechniques Antibody generation
Detection of molecules using ELISA, RIA,
western blot, immunoprecipitation, fluocytometry and immunofluorescence
microscopy, detection of molecules in living cells,
in situ localization by techniques such as FISH and GISH.
Biophysical Method: Molecular analysis using UV/visible fluorescence, circular
dichrois
, NMR and ESR spectroscopy
Molecular structure determination using X-ray diffraction and NMR,
Molecular analysis using light scattering, different types of mass spectrometry and
surface plasma resonance methods.
Statisitcal Methods: Measures of central tendency and dispersal; probability
distributions (Binomial, Poisson and normal)
Sampling distribution; Difference between parametric and non-parametric statistics
Confidence Interval; Errors; Levels of significance; Regression and Correlation; t-test;
Analysis of variance; X2 test;
Basic introduction to Muetrovariate statistics, etc.
Radiolabeling techniques: Detection and measurement of different types of
radioisotopes normally used in biology, incorporation of radioisotopes in biological
tissues and cells, molecular imaging of radioactive material, safety guidelines.
Microscopic techniques: Visulization of cells and subcellular components by light
microscopy, resolving powers of different microscopes, microscopy of living cells,
scanning and transmission microscopes,
different fixation and staining techniques for EM, freeze-etch and freezefracture
methods for EM,
image processing methods in microscopy.
Electrophysiological methods: Single neuron recording, patch-clamp recording,
ECG, Brain activity recording, lesion and stimulation of brain, pharmacological
testing, PET, MRI, fMRI, CAT .
Methods in field biology: Methods of estimating population density of animals and
plants, ranging patterns through direct, indirect and remote observations,
sampling methods in the study of behavior, habitat characterization: ground and
remote sensing methods.

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