Doc10-16 BHHRL Qual Man
Doc10-16 BHHRL Qual Man
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BHHRL Effective (or Post) Date: 6-March-09
Document Origin Company: BHHRL
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Title:
QUALITY MANUAL
Annual Review
1. Introduction 3
2. References 3
3. Terms And Definitions 3
4. Management Requirements 4
4.1. Organization 4
4.2. Management System 6
4.3. Document Control 7
4.4. Review of Contracts, Orders and Research Project Proposals. 8
4.5. Referral of Laboratory Testing 8
4.6. Purchasing Services And Supplies 9
4.7. Service To The Client 9
4.8. Complaints 10
4.9. Control Of Nonconforming Work 10
4.10. Improvement 11
4.11. Corrective Action 11
4.12. Preventive Action 11
4.13. Control Of Records 12
4.14. Internal Audits 12
4.15. Management Reviews 13
5. Technical Requirements 13
5.1. General 13
5.2. Personnel 13
5.3. Accommodation And Environmental Conditions 14
5.4. Test Methods and Method Validation 15
5.5. Equipment 17
5.6. Measurement Traceability 18
5.7. Sampling 18
5.8. Handling and Transport of Samples 19
5.9. Assuring The Quality Of Test And Calibration Items 19
5.10. Reporting Of Results 20
6. Appendices 21
1. Introduction
1.1. The Botswana Harvard HIV Reference Laboratory (BHHRL) is a medical
testing laboratory involved in both diagnostic and research testing. The
management of BHHRL understands and recognizes the importance of the work
carried out by the institution and has thus placed great value in quality
management. In this regard, management has developed a Quality Management
System based on the international standard ISO/IEC 17025:2005 (BOS
ISO/IEC 17025:2005 as adopted by the Botswana Bureau of Standards).
1.2. The quality management system is defined and documented in this Quality
Manual and other documents that make up the Quality Management System
documents. Documentation of the Quality Management System used at BHHRL
follows a 4-tier pyramid made up of Quality Manual, Policies and Procedures,
Work Instructions and Forms/Records.
1.3. The Quality Manual itself defines the Quality Management System, states
responsibilities of the personnel affected by the system and makes reference to
the standard operating procedures for all the activities that make up the
Quality Management System.
1.4. The Quality Manual will also be used to inform those who use our services of our
Quality Management System and the various controls used to assure testing
service quality.
1.5. The Quality Manual shall be reviewed annually and revised when and as
necessary so as to be up to date and reflect the Quality Management System that
will be currently in use. It shall be issued on controlled copy basis to all those
affected by the Quality Management System and on an uncontrolled copy basis
to suppliers and those who use our services.
1.6. For effectiveness, the Quality Manual should be used in conjunction with all the
documents it makes reference to as well as others that make up the Quality
Management System documents.
2. References
2.1. BOS ISO/IEC 17025 Standard – General Requirements for the Competence of
Testing and Calibration Laboratories.
2.2. ISO 9000 - Quality Management Systems -- Fundamentals and Vocabulary
4. Management Requirements
4.1. Organization
4.1.1. The BHHRL is constituted by the Botswana Harvard AIDS Institute
Partnership for HIV Research and Education. Botswana Harvard Partnership
and the MoH diagnostic laboratory established to support the National anti
retroviral programme (MASA). The BHHRL has been established as part of
the collaborative research and training initiative between the Botswana
Government and the Harvard AIDS Institute which was established in 1996.
4.1.2. BHHRL has legal responsibility over its activities and carries out its
activities in a manner that meets the requirements of the BOS ISO/IEC
17025:2005 International Standard making sure clients’ needs are fulfilled as
well as those of all regulatory authorities and organizations. This Quality
Management System covers all work carried out at the BHHRL main
facilities as well as all the clinics situated in the country that carry out
activities for and under oversight by BHHRL.
4.1.3. The laboratory is not part of any other organization that carries out work
other than medical testing and HIV research work and the responsibilities of
all key personnel in the organization that have an involvement or influence
on the testing activities of the laboratory, are clearly defined to prevent any
potential conflict of interest.
4.1.4. The laboratory has technical and managerial personnel who have the
authority and resources needed to carry out their duties which include
implementing, maintaining and improving the Quality Management System
as well as identifying the occurrence of departures from the Quality
Management System or from the procedures for performing test and to
initiate actions to prevent or minimize such departures.
4.1.5. The Terms and Conditions of Service of BHHRL have been developed to
ensure that personnel do not have undue internal and external commercial,
financial and other pressures and influences that may adversely affect the
quality of their work. They have also been developed to ensure that BHHRL
and its personnel are not involved in activities that would diminish
confidence in BHHRL’s competence, impartiality, judgement or operational
integrity.
4.1.6. It is the policy of BHHRL to protect the confidential information of those
involved in our activities including protecting electronic storage and storage
of results. To this end all employees are required to sign a confidentiality
document on employment.
4.1.7. BHHRL has in place an organogram that defines the organization and
management structure of the laboratory, relationships with other
4.8. Complaints
4.8.1. BHHRL has established a policy and procedure for the resolution of
complaints received form clients or other parties. Records of all complaints
are kept as well as those for the investigations and corrective actions
instituted.
4.8.2. The Quality Manager monitors complaints and any other discrepancies
that may raise doubt about compliance with policies and procedures. If it is
determined that sufficient cause exists, an audit of those areas of activities
involved will be performed according to the internal audit procedures.
4.8.3. Refer to : Document No:
4.8.3.1.BHHRL/001PR08 Corrective and Preventive Actions and Continual
Improvement
4.8.3.2.BHHRL/001PR06 Handling Complaints/Suggestions and
Monitoring Client and Staff Satisfaction,
4.8.3.3.BHHRL/001PR08 Corrective and Preventive Actions and Continual
Improvement
BHHRL/001PR011 Internal Audits.
4.8.3.4.BHHRL/001PR06 Handling Complaints/Suggestions and
Monitoring Client and Staff Satisfaction
promptly followed to identify the root causes of the problem and to eliminate
them.
4.9.4. Refer to; Document No:
4.9.4.1.BHHRL/001PR07 Control of Nonconforming Work,
4.9.4.2.BHHRL/001PR08 Corrective and Preventive Actions and Continual
Improvement
4.10. Improvement
4.10.1. BHHRL continually improve the effectiveness of its Quality Management
System through the use of the quality policy, quality objectives, and audit
results, analysis of data, corrective actions, preventive actions and
management review.
4.10.2. Refer to: Document No:
4.10.2.1. BHHRL/001PR08 Corrective and Preventive Actions and
Continual Improvement
5. Technical Requirements
5.1. General
5.1.1. BHHRL recognizes that many factors determine the correctness and
reliability of the tests performed by the laboratory. These include
contributions from human factors, accommodation and environmental
conditions, test and calibration methods and method validation, equipment,
measurement traceability, sampling and handling of samples.
5.1.2. The extent to which the factors contribute to the total uncertainty of
measurements differs considerably between types of tests. BHHRL takes
into account these factors in developing test procedures, in training and
qualification of personnel and in selection and calibration of the equipment it
uses.
5.1.3. Refer to: Document No:
5.1.3.1.BHHRL/001PR016 Accommodation and Environmental Conditions
and Process Control.
5.2. Personnel
5.2.1. BHHRL management ensures the competency of all who operate specific
equipment, who perform tests, evaluate results and sign reports. Staff
undergoing training is adequately and appropriately supervised. Personnel
5.3.4.2.BHHRL/009PR02 Housekeeping
5.3.4.3.BHHRL/009PL01 Health and Safety Manual.
5.3.4.4.Appendix 5 – List of Technical SOPs
test. The methods developed are validated appropriately before use and are
available for examination by the client and other authorized recipients. New
test methods are not used until written procedures have been developed.
5.4.8. All standard and non-standard test methods and procedures, including
those developed by the laboratory are validated to ensure that such methods
and procedures are fit for the intended use and are relevant to the
requirements of ISO/IEC 17025:2005 as well as the client. Validation is as
extensive as is necessary to meet the needs of the given application or field
of application. If changes are made to validated non-standard methods, the
influence of such changes is documented and if appropriate a new validation
is carried out. The results of such validation are recorded together with the
procedure utilized and any other relevant information. The record states
whether the method or procedure is fit for the intended use.
5.4.9. Validation is always a balance between costs, risks, and technical
possibilities and the range and accuracy of the values obtainable from
validated methods, as assessed for the intended use, is relevant to the client’s
needs.
5.4.10. Any calibrations performed in-house are subject to the SOP on Estimation
of Uncertainty of Measurement.
5.4.11. The SOP on Estimation of Uncertainty Measurement is applied for testing
uncertainness of measurement, except when the test methods prohibit such
rigorous calculations. In certain cases it is not possible to undertake
metrologically and statistically valid estimations of uncertainty of
measurement. In these cases the laboratory attempts to identify all
components of uncertainty and make the best possible estimation and ensure
that the form of reporting does not give an exaggerated impression of
accuracy. Reasonable estimation is based on knowledge of the performance
of the method and on the measurement scope and makes use of previous
experience and data. When estimating the uncertainty of measurement, all
uncertainty components which are of importance in the given situation shall
be taken into account using appropriate methods of analysis.
5.4.12. In cases where a well organized test method specifies limits to the values
of the major source of uncertainty of measurement and specifies the form of
presentation of calculated results, the laboratory is considered to have
satisfied the estimation of uncertainty of measurement by following the test
method and reporting instructions.
5.4.13. Calculations and data transfers are subject to appropriate checks in a
systematic manner. The accuracy of the calculations is verified, data
transfers are checked for typographical errors, omissions and mistakes.
5.5. Equipment
5.5.1. BHHRL is furnished with all the items of sampling, measurement and test
equipment required for the correct performance of the tests. In those cases
where BHHRL needs to use equipment outside its permanent control, it
ensures that the requirements of ISO/IEC 17025:2005 as well as those of
other regulatory authorities are met.
5.5.2. Equipment is operated by authorized personnel only. Up-to-date
instructions on the use and maintenance of equipment are readily available
for use by the appropriate laboratory personnel.
5.5.2.1.Refer to: Document No:
5.5.2.2.BHHRL/001PR020 Equipment and Instrument Management
5.5.2.3.BHHRL/001PR022 Measurement Traceability and Control of
Measuring Instruments.
5.5.2.4.BHHRL/001PR07 Control of Nonconforming work
5.7. Sampling
5.7.1. BHHRL maintains and utilizes a Laboratory Service Manual and an SOP
for Sample Collection for sampling when it carries out sampling of blood
and other samples for subsequent testing.
5.7.2. Both the Laboratory Services Manual and the SOP on Sample Collection
are available at all locations where sampling is undertaken. The sampling
process takes into consideration the factors to be controlled to ensure the
validity of the test results.
5.7.3. The sampling process, wherever reasonable, is based on appropriate
statistical techniques.
5.7.4. Where the client requires deviations, additions, or exclusions from the
documented sampling procedure, these are recorded in detail with the
appropriate sampling data and included in all documents containing test
results and communicated to the appropriate personnel.
5.7.5. BHHRL utilizes procedures for recording relevant data and operations
relating to sampling that forms part of the testing that is undertaken. These
records include the sampling procedure used, the identification of the
sampler, environmental conditions (if relevant) and equivalent means to
identify the sampling location as necessary and if appropriate the statistics
the sampling procedure is based upon.
5.7.6. Refer to: Document No:
5.7.6.1 BHHRL/002PR01 Laboratory Services Handbook
given to the layout of the test report especially with regard to the
presentation of the test data and ease of assimilation by the reader.
5.10.7. Material amendments to a test report after issue are made only in the form
of a further document or data transfer, which includes the statement
“Supplement to Test Report…………” or an equivalent form of wording.
Such amendments meet all the requirements of ISO/IEC 17025:2005. When
it is necessary to issue a complete new report, it is uniquely identified and
contains a reference to the original that it replaces.
5.10.8. Refer to: Document No:
5.10.8.1. BHHRL/001PR025 Reporting of Laboratory Results,
5.10.8.2. BHHRL/001PR026 Handling of Laboratory Data.
6. Appendices
6.1. BHHRL Organogram
6.2. Table of Deputies
6.3. Quality Management Objectives
6.4. List of Technical SOP’s
Revision History:
Revision Revision Revised By: Brief description of revision:
Level: Date:
1
PBMC Lab*
Specimen Reception Specimen Inventory Lemme Kebaabetswe Shipping
Kedibonye Rammidi Susan Kobe Lebogang Mhango Tuelo Baitseng
Kgakgamatso Motswana Motshepe Motswedi Anderson Philimon Sebogodi
Keothepile Nthebogang Phiri Thato Iketleng
Angela Nkhutelang
Sethunya Ledikwe
Chemistry Lab Serology Lab Hematology Lab CD4 Lab DNA PCR Lab Viral Load Lab
Baitshepi Jorowe Victoria Maiswe Matshediso Talkmore Maruta Dorcus Moses Phillimon Sebogodi
Dineo Mongwato Zachariah Gaone Retshabile Terrence M.
Dikotlana (BHP011) Tshedimoso (BHP012) Tshepo (BHP007) MmaBana (BHP016) Mashi_Plus Mashi (BHP004)
Victoria Maiswe Lemme Kebaabetswe Models of Care Phillimon Sebogodi (BHP019)
Baitshepi Jorowe Dorcus Moses
Botsogo (BHP010) CTU (ACTG/IMPAACT) BHP017/BHP023 Basadi (BHP018) Host Genetics Bana-Baylor
Models of Care Lebogang Mhango (BHP022) Talkmore Maruta
Kgalalelo Johane Motswedi Anderson Chabeni Zimba
Gaone Retshabile Kebaneilwe Lebani
Approved by: Dr. Rosemary Musonda Title: Laboratory Director Sign:……………………………………………………………. Date:…………………………………….
APPENDIX 2 – QUALITY MANUAL
The policy of BHHRL is such that a top management member will ‘ACT’ in place of the
absent manager/director. The name of the acting manager/director is circulated to staff if
and when the need arises.
Signed:…………………………..
Date: …………………………..
APPENDIX 3 – QUALITY MANUAL
Sign: …………………………………..
Date: …………………………………
APPENDIX 4 – Quality Manual
Document
Document title
number
002/WIN-01 Daily Specimen Reception and Processing
002/WIN-02 Specimen Rejection Creteria
002/EQI-01 Beckman Allegra 21 Centrifuge Operating Instruction
007/TME-02 Amplicor HIV-1 DNA test
007/TME-01 QIAmp DNA Blood kit
001/PRC-03 Transporting of Specimens Within the Laboratory
001/PRC-05 Sample Storage
003/EQI-01 Becton Dickinson FACS Calibur Flow Cytometer Operating Instructions
003/WIN-03 Running TRUCOUNT Controls
003/WIN-04 Ensuring FACSCount Pipetting Precision and Accuracy
003/WIN-06 Validating CD4 results using LDMS
005/TME-01 Whole Blood Analysis (Full Blood Count) Using XE-2100 Haematology Analyser-
003/WIN-05 Work Listing Samples For CD4 Testing Using Laboratory Management
Information Systems (LMIS)
003/TME-02 Enumeration of absolute counts of CD4, CD8 and CD3 T lymphocytes in unlysed
whole blood using BD FACSCount System
003/WIN-07 FACSCOMP
003/EQI-02 Operating Instructions for Becton Dickinson's FACSCount System
003/TME-03 Automated Staining for flow cytometry lyse/no-wash applications using BD
Sample Processor (SP-1)
001/PRC-04 Validation of Equipment, Testing Methods, Materials and Processing -Standard
Operating Procedures
004/EQI-02 COBAS AMPLICOR Analyzer
004/EQI- 01 Equipment Operating Instructions for COBAS Ampliprep Analyser
004/TME- 02 COBAS Ampliprep AMPLICOR HIV-1 Monitor Test, version 1.5
004/TME-01 COBAS Ampliprep/COBAS Monitor Test, version 1.5
008/TME-06 Urine Microscopy
008/TME-05 Urinalysis - COMBUR 10 Test
003/TME-01 Enumeration of Leucocyte Subsets Using FACS Calibur Flow Cytometer
008/TME-03 Quantitaive Determination Of Clinical Chemistry Analytes In Plasma And Serum
Using COBAS Integra 400 Plus
008/EQI-01 COBAS Integra 400 Plus
008/TME-04 Reporting Critical Chemistry and Haematology Results
006/TME-01 Manual HIV ORTHO Antibody-Capture Test
006/TME-02 Manual Method for MUREX HIV -1.2.0
006/TME-03 Enzyme Immunoassay for the Detection of Hepatitis B Surface Antigen in Human
Serum or Plasma- Murex HBsAg Version 3.
006/TME-04 An Enzyme immunoassay for the detection of antibodies to Hepatitis C virus
(HCV) in human serum or plasma. Murex anti-HCV (Version 4.0)
006/TME-06 Qualitative Determination Of Human Chorionic Gonadotrophin (hCG) In Urine For
Early Detection Of Pregnancy- ABBOTT TestPack Plus hCG COMBO with OBC
006/WI-05 Vironostika Less Sensitive EIA
APPENDIX 4 – Quality Manual
Document
Document title
number
006/WI-04 An enzyme immunoassay for the detection of antibodies to hepatitis C virus (HCV)
in human serum or plasma. Murex anti-HCV (Version 4.0)
006/WI-03 Enzyme Immunoassay for the Detection of Hepatitis B Surface Antigen in Human
Serum or Plasma- Murex HBsAg Version 3.0
006/WI-01 HIV ORTHO ANTIBODY- CAPTURE TEST
006/WI-02 MANUAL ELISA METHOD FOR MUREX HIV 1.2.0- WORK INSTRUCTION
004/WI-01 Manual RNA Extraction (COBAS AMPLICOR HIV-1 Monitor Test, Version 1.5
Standard) HIM
004/WI-02 Preparing Working Master Mix (COBAS AMPLICOR HIV-1 Monitor Test, Version
1.5 Standard) HIM & PHM
004/WI-03 Loading A- Rings (COBAS AMPLICOR HIV-1 Monitor Test, Version 1.5 Standard)
HIM & PHM
002/EQI-02 Multifuge 3L Heraeus Centrifuge Operating Instructions
002/WIN-04 Standard Operating Procedure for Specimen Collection, Transport and Results
handling for the Botswana Vaccine Trail Units in Gaborone and Jwaneng for HIV
Vaccine Trial Network Protocol 903
002/WIN-03 Specimen Collection, Transport and Results handling for the Botswana Vaccine
Trail Units for HIV Vaccine Trial Network Protocol 048
009/EQI-01 GUAVA PCA CELL COUNTER
009/TME-01 Isolation of Peripheral Blood Mononuclear Cells (PBMCs)
007/TME- 03 HLA TYPING
001/PRC-22 Bi-Distiller Operating instructions
008/EQI-02 Roche Integra Cassette Mixer Operating Instructions
008/WI-01 Urinalysis COMBUR 10 Test
006/EQI-01 Welcome Shaker
006/TME-05 Syphilis Rapid Plasma Reagin (RPR) Test- Qualitative
006/TME-07 Haemagglutination kit for the detection of antibodies to Treponema pallidum in
human serum- Wellcosyph HA*
001/PRC-16 Autoclave Operating Instructions
002/WIN-05 HVTN 048 Specimen Reception
002/WIN-07 Laboratory Data Management System (LDMS)
002/WIN-08 Shipping Diagnostic Specimen
002/WIN-09 Capturing the Tracking Form Information Using Laboratory Management
Information Systems (LMIS)
002/WIN-11 Receiving Specimens into Laboratory Management Information Systems (LMIS)
002/WI-07 HVTN Sample Reception
002/WI-08 Creating LDMS labels using Zebra Printer
002/WI-09 HVTN 048 LDMS Logging and labeling guide
009/WI-01 PBMC Specimen Processing
009/EQI-02 Biofuge Primo Centrifuge /Operation Instruction
009/EQI-03 Water Bath Operating Instructions
009/EQI-04 Multifuge 3 s-r Centrifuge Operation Instruction
APPENDIX 4 – Quality Manual
Document
Document title
number
006/WI-08 BEHRING ELISA PROCESSOR (BEP2000) OPERATING INSTRUCTIONS
006/WI-06 Bio-Tek ELX50 Automated Strip Washer Operation Instructions
006/WI-07 Bio-Tek ELX800 Universal Plate Reader Operation Instructions
007/EQI-03 Operation of the GILSON Pipetman
007/WI-01 DNA EXTRACTION-QIAGEN KIT
007/WI-02 DNA EXTRACTION- SPECIMEN PREPARATION
007/WI-03 DNA EXTRACTION- REAGENT PREPARATION
007/WI-04 Operation of the GRANT QBT2 Block Incubator
007/WI-05 Maxi-Mix Vortex Mixer Operation Instructions
007/WI-06 DNA Detection
007/WI-07 IEC Micromax Microfuge
007/WI-08 DNA Amplification
007/WI-09 Ultra Violet (Hood)- Captair bio by erlab Operation Instruction
007/WI-10 ABI PRISM 3100 Genetic Analyzer Operation Manual
007/WI-11 GeneAmp PCR System 9700
004/WI-04 Loading Specimens and controls for Ampliprep
009/WI-02 Starting the GUAVA PCA Cell counter
003/TME-04 Double- Platform (Dual) Enumeration CD4+ T-Cells By Flow Cytometry
002/WIN-06 HVTN Specimen Rejection Criteria
001/PRC-21 Transporting Of Specimens From Site To Laboratory
002/WIN-12 HVTN 903 Specimen Reception Standard Operating Procedures
002/WI-10 HVTN 903 LDMS Logging and labeling guide
002/WIN-13 Reporting Syphilis Titer Results
002/WIN-14 Reporting Results From the Clinic to BHHRL