High Performance Computing-1 PDF
High Performance Computing-1 PDF
OpenMP is a compiler directive that allows the programmer to specify which parts of the code
should be parallelized. It uses a fork-join model where a team of threads is created at the
beginning of a parallel region, and the threads work on different parts of the code in parallel.
Once the work is completed, the threads synchronize and join back together.
1. Simplifies parallel programming: OpenMP is easy to learn and use, and the code can be
easily parallelized with minimal changes to the existing code.
2. High performance: OpenMP provides good performance for shared memory parallelism,
and it scales well with the number of processors.
3. Portable: OpenMP is supported by multiple compilers and platforms, which makes it
easy to write portable parallel programs.
4. Compatible with other parallel programming models: OpenMP can be used in
combination with other parallel programming models such as MPI and CUDA.
A multi-core processor is a CPU that contains two or more processing cores on a single chip.
Each core is essentially a separate CPU that can execute instructions independently of the
other cores. This allows for better performance by allowing multiple tasks to be executed
simultaneously, each on its own core. For example, if a computer has a quad-core processor, it
can execute four tasks at the same time, which can lead to significant improvements in overall
system performance.
Hyper-threading, on the other hand, is a technology that allows a single physical core to behave
like two logical cores. This is achieved by duplicating certain parts of the CPU that are used less
frequently, such as the register file, so that the core can handle two threads at the same time.
This means that the CPU can execute two threads simultaneously, allowing for better
performance and increased efficiency.
Overall, both multi-core processors and hyper-threading are important technologies that help
improve the performance of modern computer systems, allowing them to handle more complex
tasks and run multiple applications simultaneously.
1. Fork: The parent process divides the problem into smaller sub-tasks and creates a
separate child process for each sub-task. Each child process then works on its
respective sub-task.
2. Join: When all child processes have completed their tasks, they return their results to the
parent process. The parent process then combines the results from all the child
processes to produce the final result.
This model provides a high level of parallelism and can significantly reduce the time required to
solve complex problems. However, it also requires careful design to ensure that tasks can be
divided efficiently and that the overhead of communication and synchronization between
processes is minimized.
OpenMP is a popular parallel programming API that provides a simple and portable way to
develop parallel programs using the Fork-Join model. It allows developers to parallelize their
code using compiler directives and library functions, without the need for complex threading and
synchronization code.
Overall, exploiting different levels of parallelism can significantly improve the performance and
efficiency of computing systems, especially in handling large-scale and computationally
intensive tasks.
1. Static mapping: In this technique, the tasks are assigned to the computing resources at
the start of the execution and the mapping remains fixed throughout the execution. This
technique is simple to implement but may not be optimal if the workload distribution
changes during the execution.
2. Dynamic mapping: In this technique, the tasks are dynamically assigned to the
computing resources based on the current workload distribution. This technique can
adapt to changing workload distribution but may incur overhead due to the frequent
reassignment of tasks.
3. Centralized mapping: In this technique, a central controller or load balancer is
responsible for assigning tasks to the computing resources. The load balancer monitors
the workload distribution and assigns tasks to the least loaded resource. This technique
can be efficient for small to medium-scale systems but may not scale well for large-scale
systems.
4. Decentralized mapping: In this technique, each computing resource is responsible for
assigning tasks to itself or other resources. Each resource monitors its own workload
and the workload of its neighbors and assigns tasks to the least loaded resource. This
technique can be scalable and fault-tolerant but may require more communication
overhead.
5. Hybrid mapping: This technique combines two or more mapping techniques to achieve
the benefits of each technique. For example, a hybrid mapping technique can use static
mapping for coarse-grained tasks and dynamic mapping for fine-grained tasks.
Overall, the choice of mapping technique depends on the characteristics of the workload, the
size of the system, and the performance goals. The goal is to achieve a balanced workload
distribution that minimizes the execution time, maximizes the resource utilization, and avoids
resource contention.
These are just a few of the many directives provided by OpenMP. Each directive has specific
syntax and behavior, so it's important to consult the OpenMP specification for detailed
information on how to use them.
MPI is a message-passing library that allows multiple processes to communicate with each
other over a network. It is typically used for parallelizing large-scale applications that run on
distributed memory systems, such as computer clusters. MPI programs divide the workload into
smaller tasks that are executed by separate processes, and communicate with each other using
message passing.
OpenMP, on the other hand, is a shared-memory parallel programming model that is typically
used for parallelizing applications on shared-memory systems, such as multi-core processors or
symmetric multiprocessors (SMPs). OpenMP programs divide the workload into smaller tasks
that are executed by separate threads within the same process, and communicate with each
other using shared memory.
The Hybrid programming model combines the strengths of both MPI and OpenMP to achieve
high-performance parallelism on large-scale systems with both distributed and shared memory.
In the Hybrid model, a master process coordinates the overall execution of the program and
distributes the workload to a set of worker processes. Each worker process then uses OpenMP
to parallelize the execution of its assigned tasks across multiple threads.
For example, in a Hybrid model, a large-scale simulation program could use MPI to distribute
the simulation across multiple nodes in a cluster, while each node uses OpenMP to parallelize
the simulation across multiple cores on that node. This combination of distributed and
shared-memory parallelism can result in significant speedup and better scalability compared to
using either MPI or OpenMP alone.
The Hybrid programming model requires careful coordination between the MPI and OpenMP
libraries to ensure that the workload is evenly distributed and communication overhead is
minimized. However, with proper implementation and optimization, the Hybrid model can
provide a powerful and flexible parallel programming paradigm for a wide range of scientific and
engineering applications.
Private Variables:
A private variable is typically used when a variable is only needed within a specific thread or
process and does not need to be shared with others. Private variables are used to ensure that
each thread or process has its own copy of the variable, and that changes made to the variable
by one thread or process do not affect the value of the variable in other threads or processes.
Private variables can improve performance by reducing the amount of contention for shared
resources, and can simplify the implementation of parallel algorithms.
For example, in an OpenMP program, a loop index variable can be declared as private so that
each thread has its own copy of the variable and can operate independently without interfering
with other threads. Similarly, in an MPI program, each process can have its own private
variables that are not shared with other processes. Private variables in OpenMP can be
declared using the private keyword, while in MPI, private variables can be declared using local
variables or by passing data between processes using MPI communication routines.
Shared Variables:
A shared variable, on the other hand, is used when a variable needs to be accessed and
modified by multiple threads or processes. Shared variables are typically used in situations
where multiple threads or processes need to work together to achieve a common goal, such as
in shared-memory parallel programming models like OpenMP or in distributed-memory models
like MPI.
However, concurrent access to shared variables can lead to race conditions and other
synchronization problems, which can result in incorrect program behavior or performance
degradation. To ensure correct behavior, shared variables are typically protected by locks,
barriers, or other synchronization mechanisms.
In OpenMP, shared variables can be declared using the shared keyword, while in MPI, shared
variables can be declared using global variables or by explicitly passing data between
processes using MPI communication routines.
Amdahl's Law: Amdahl's Law is named after Gene Amdahl, a computer architect who proposed
the law in 1967. The law states that the maximum speedup of a parallel algorithm is limited by
the fraction of the algorithm that cannot be parallelized. In other words, if a certain portion of the
algorithm must be executed sequentially, then no matter how many processors are used, the
overall speedup will be limited by the sequential portion.
where p is the fraction of the algorithm that can be parallelized, and N is the number of
processors. The equation shows that as the number of processors increases, the maximum
speedup approaches 1/(1-p), which is limited by the sequential portion of the algorithm.
Gustafson's Law: Gustafson's Law, proposed by John Gustafson in 1988, takes a different
approach than Amdahl's Law by focusing on the amount of parallel work that can be added to a
problem as its size increases. Gustafson's Law argues that as the size of a problem increases,
the amount of parallel work that can be added to the problem increases as well. Therefore, the
speedup of a parallel algorithm should be proportional to the size of the problem, rather than
being limited by a fixed fraction of sequential work.
where N is the number of processors, and S is the fraction of the algorithm that can be
parallelized. The equation shows that as the problem size increases, the parallel work increases
proportionally, and the speedup of the algorithm can be increased by adding more processors.
Asynchronous message passing can be implemented using non-blocking send and receive
operations. The non-blocking send operation allows the sending process to send a message
and continue executing without waiting for a response. The non-blocking receive operation
allows the receiving process to receive a message without blocking the execution of the
process. However, the receiving process must eventually check for the arrival of the message
and respond accordingly.
Synchronous message passing can be implemented using blocking send and receive
operations. The blocking send operation blocks the sending process until the message is sent
and received by the receiving process. The blocking receive operation blocks the receiving
process until the message is received from the sending process.
Message Passing:
In Message Passing, processes communicate by sending and receiving messages. Each
process has its own memory space, and communication occurs only through explicitly sending
and receiving messages. This communication can be implemented using different APIs, such as
MPI, OpenMP, or PVM.
However, Shared Memory Communication also has some disadvantages, such as:
Originally developed for rendering 3D graphics in video games and other multimedia
applications, GPGPUs have since evolved into powerful computing tools that can perform
complex calculations in parallel, allowing for faster processing times and improved performance.
GPGPUs work by breaking down a task into smaller, more manageable pieces and assigning
those pieces to individual processing cores, which can work in parallel to complete the task
faster than a traditional CPU. GPGPUs can be used in a wide range of fields, including data
science, finance, and engineering, to speed up computations and perform complex simulations.
1. CUDA-enabled GPU: A GPU that supports CUDA and has a large number of processing
cores.
2. CUDA driver: A software component that interfaces with the GPU hardware and provides
an interface for applications to access the GPU.
3. CUDA runtime: A software library that provides a set of functions and APIs for
developing and running CUDA applications.
4. CUDA toolkit: A suite of software tools that includes the CUDA compiler, libraries, and
development tools.
5. CUDA application: A program that utilizes the CUDA architecture to accelerate parallel
computing tasks on the GPU.
The CUDA architecture is based on a hierarchical model of parallelism, which allows for
massive parallelization of computations. At the lowest level, individual processing cores execute
instructions in parallel. These cores are organized into groups called streaming multiprocessors
(SMs), which manage the execution of threads (parallel sub-tasks) and coordinate memory
access. Multiple SMs are combined to form a CUDA-enabled GPU, which can have hundreds or
thousands of processing cores.
CUDA applications are typically written in a combination of host code (which runs on the CPU)
and device code (which runs on the GPU). The CUDA programming model is based on a set of
extensions to the C programming language, which allow developers to write parallel code that
can be executed on the GPU.
The CUDA toolkit includes the CUDA compiler, which compiles device code into machine code
that can be executed on the GPU. The toolkit also includes libraries for common parallel
computing tasks, such as linear algebra, signal processing, and image processing.
The CUDA runtime provides a set of functions and APIs for managing memory, launching
kernels (which are the individual sub-tasks), and synchronizing data between the CPU and the
GPU. The CUDA driver provides a low-level interface for accessing the GPU hardware.
Overall, the CUDA architecture provides a powerful platform for developing and running
GPGPU applications. Its ability to harness the massive parallelism of GPUs can lead to
significant performance improvements for a wide range of computationally intensive tasks,
including scientific simulations, data analytics, and machine learning.
Heterogeneous computing using OpenCL involves breaking down a computational task into
smaller sub-tasks that can be executed in parallel on different computing devices. The OpenCL
programming model includes the following key components:
1. Host code: The main program that runs on the CPU and manages the execution of the
OpenCL kernels.
2. Kernels: Parallel subtasks that are executed on different computing devices.
3. OpenCL runtime: A software library that manages the execution of kernels and
coordinates data transfer between the host and device.
Developers write kernels in a C-like language called OpenCL C, which is used to describe the
parallel computations that will be executed on the different computing devices. The OpenCL
runtime manages the distribution of these kernels to the appropriate computing devices and
synchronizes the results.
One of the benefits of heterogeneous computing using OpenCL is that it allows developers to
utilize the strengths of different computing devices for specific tasks. For example, GPUs are
typically optimized for parallel processing of large datasets, while CPUs are better suited for
sequential processing of smaller datasets. By using OpenCL to program for both types of
devices, developers can create applications that take advantage of the strengths of each
device.
Overall, heterogeneous computing using OpenCL is a powerful platform for developing and
running applications that require high performance and parallel processing of large datasets. Its
ability to harness the power of multiple computing devices can lead to significant performance
improvements for a wide range of applications, including scientific simulations, data analytics,
and machine learning.
1. Host code: The main program that runs on the CPU and manages the execution of the
OpenCL kernels.
2. Kernels: Parallel sub-tasks that are executed on different computing devices.
3. OpenCL runtime: A software library that manages the execution of kernels and
coordinates data transfer between the host and device.
In addition to CPUs and GPUs, OpenCL can also be used to program other types of devices,
such as FPGAs (Field-Programmable Gate Arrays) and DSPs (Digital Signal Processors), which
can provide additional performance benefits for certain types of applications.
Virtualization refers to the creation of a virtualized environment that emulates the physical
hardware of a computer system. This virtual environment, also known as a virtual machine
(VM), can be created on top of an existing operating system (host OS) and allows multiple guest
operating systems to run simultaneously on the same hardware. Each guest operating system
runs independently of the others and has its own dedicated resources, such as CPU, memory,
and storage. Virtualization allows for greater flexibility and scalability in deploying and managing
software applications, as it allows multiple operating systems to run on a single physical
machine.
Containerization, on the other hand, refers to the creation of isolated environments (containers)
that share the same operating system kernel. Containers provide a lightweight alternative to
virtualization, as they do not require a complete guest operating system to run. Instead, they
use the host operating system and share its resources, such as CPU, memory, and storage.
Each container has its own isolated file system, network interface, and runtime environment,
which allows multiple applications to run on the same host operating system without interfering
with each other. Containerization provides greater efficiency and agility in deploying and
managing software applications, as containers can be easily moved between different
environments and can be quickly started or stopped.
The main difference between virtualization and containerization is that virtualization creates a
fully isolated virtual environment that emulates the entire physical hardware of a computer
system, while containerization creates isolated environments that share the same operating
system kernel. Virtualization provides greater isolation between different operating systems,
while containerization provides greater efficiency and agility in deploying and managing
applications.
Both virtualization and containerization are widely used in cloud computing and data center
environments to improve resource utilization, reduce costs, and increase scalability and
flexibility.
Parallel computing frameworks can be classified into two main categories: shared-memory
frameworks and distributed-memory frameworks.
Shared-memory frameworks, also known as thread-based frameworks, are designed for parallel
computing on a single machine with multiple CPUs or cores. These frameworks use
multithreading to divide the workload across multiple threads, which share a common memory
space. Examples of shared-memory frameworks include OpenMP, POSIX threads, and Intel
Threading Building Blocks (TBB).
In addition to these categories, there are also hybrid frameworks that combine both
shared-memory and distributed-memory approaches to achieve the benefits of both. Examples
of hybrid frameworks include OpenMPI, which combines MPI and OpenMP, and MPI+X, which
combines MPI with other shared-memory frameworks.
Parallel computing frameworks provide several benefits for developers, including increased
performance and scalability, reduced development time and complexity, and improved resource
utilization. They allow developers to take advantage of the power of modern computing
systems, which often contain multiple processors or computing nodes, to accelerate the
execution of computationally intensive tasks.
There are several use cases for HPC in the cloud, including:
1. Scientific computing: Scientists and researchers use HPC in the cloud to perform
complex simulations, modeling, and data analysis tasks. Examples include weather
forecasting, computational fluid dynamics, molecular dynamics simulations, and genome
sequencing.
2. Engineering and design: Engineers and designers use HPC in the cloud to perform
computationally intensive tasks related to product design, simulation, and optimization.
Examples include finite element analysis, computational fluid dynamics, and electronic
design automation.
3. Financial services: Financial institutions use HPC in the cloud to perform risk analysis,
portfolio optimization, and other computationally intensive tasks related to financial
modeling and forecasting.
4. Machine learning and artificial intelligence: Machine learning and AI applications require
large amounts of processing power and data storage. HPC in the cloud can provide the
necessary resources to train and deploy machine learning models and perform AI tasks
at scale.
5. Media and entertainment: The media and entertainment industry uses HPC in the cloud
to process and render high-resolution video and graphics, perform audio and speech
processing, and perform other computationally intensive tasks related to content creation
and delivery.
Overall, HPC in the cloud provides a flexible, scalable, and cost-effective solution for
organizations that need to perform computationally intensive tasks. It allows organizations to
quickly access and utilize the computing power they need, without the need to invest in and
maintain their own on-premises HPC infrastructure.