Bac Notes
Bac Notes
# Introduction:
• Mycoplasmas are the smallest microbes capable of free-living in the environment and self replicating on
artificial culture media.
• They resembles to viruses in certain properties, like size and they are also filterable by bacterial filters.
• They lack rigid cell wall, instead have a triple layered cell membrane containing sterol.
# History:
• Nocard and Roux (1898) were the first to isolate Mycoplasma as a filterable and highly pleomorphic
microorganism from bovine pleuropneumonia (PPLO)
• Later it was termed as Mycoplasma
• Eaton’s agent: it refers to the most pathogenic species, i.e. Mycoplasma pneumoniae, which was first
isolated by Monroe Eaton (1944).
# Morphology:
• They are very small pleomorphic cells and range in size from 0.2 to 0.8 mm in diameter which may
range from spherical through coccoid, coccobacillary, ring and dumbbell forms, to short and long
branching, beaded or segmented filaments.
• The filaments are slender, of varying lengths and show true branching.
• Mycoplasmas are gram-negative but are better stained by Giemsa stain.
• Mycoplasmas do not possess spores, flagella or fimbria.
• Some Mycoplasmas, including M. pneumoniae, exhibit a gliding motility on liquid covered surfaces.
# Cultural Characteristics:
• Most Mycoplasmas are facultative anaerobes.
• They grow within a temperature range of 22–41°C
• Media for cultivating Mycoplasma are enriched with 20% horse or human serum and yeast extract.
The high concentration of serum is necessary as a source of cholesterol and other lipids
• Most Mycoplasma colonies are hemolytic.
• Transportation medium: PPLO broth (cholesterol, serum enriched, albumin, phenol red/
tetrazolium)
# Morphology on agar:
# Biochemical Tests:
# Resistance:
# Pathology:
1. Virulence factor:
• Rich glycoprotein and protein in plasma membrane also acts as one of the virulence factor.
• M. pneumoniae produces a unique virulence factor known as Community Acquired Respiratory
Distress Syndrome (CARDS) toxin.
• The CARDS toxin most likely aids in the colonization and pathogenic pathways of M. pneumoniae,
leading to inflammation and airway dysfunction.
• While M. pneumoniae primarily lives on the surface of the respiratory epithelial cells, it can invade
tissues and replicate intracellularly.
• The endocytosis of M. pneumoniae by the host cells could aid in the establishment of a latent or
chronic disease state.
• It may also facilitate the bacterium in evading an immune response and interfere with the efficacy of
certain drug therapies
2. Pathogenesis:
o Bulluos myringitis
o Meningoencephalitis
o Skin rashes
o Myocarditis, pericarditis
o Reactive arthritis
o Hemolytic anemia and hypercoagulopathy.
# Laboratory diagnosis:
Specimens:
• Throat swabs
• Nasopharyngeal swabs
• Sputum,
• Tracheal aspirate
• Lung tissue specimens.
Transportation medium: PPLO broth (cholesterol, serum enriched, albumin, phenol red/ tetrazolium)
Tetrazolium reduction test: Colonies of M. pneumoniae appear red when these are flooded with solution of
tetrazolium compound which is colourless. M. pneumoniae reduces tetrazolium (colourless) to red coloured
compound (formazan).
Dienes test: A block of agar containing the colony is cut and placed on a slide. It is covered with a cover slip
on which has been dried an alcoholic solution of methylene blue and azure. And the Mycoplasmas stains azure
blue and exhibit the typical fried egg appearance.
Other tests:
‣ Polymerase chain reaction amplification
‣ Antigen detection techniques
‣ DNA probes
‣ Serological tests (specific and anti specific antigenic tests)
Treatment:
‣ Tetracyclines
‣ Erythromycin
‣ Doxycyclin
‣ Macrolite
Rickettsia
Classification:
▪ Order: Rickettsiales
▪ Tribe: Rickettsiae
▪ Family: Rickettsiaceae
▪ Genera: Rickettsia, Orientia, Ehrlichia
Introduction:
▪ Rickettsiae are obligate, intracellular, small Gram-negative bacilli.
▪ It multiplies within the cytoplasm of eukaryotic cells.
▪ Size: 0.3×1-2 µm.
▪ Genome: 1-1.5 million base pairs
▪ Rickettsiae are primary pathogens of arthropods like:
▪ Lice
▪ Fleas
▪ Ticks
▪ Mites
▪ Transmitted to humans by these arthropod vectors.
▪ Rickettsiae were originally thought to be a virus because:
▪ Have small size
▪ Stain poorly with Gram stain
▪ Grows only in the cytoplasm of eukaryotic cells
▪ Obligate intracellular parasites
▪ Rickettsiae are bacteria because:
▪ Have Gram-negative cell wall
▪ Contain both DNA and RNA
▪ Contain enzymes for Kreb cycle
▪ Contain ribosomes for protein synthesis
▪ Susceptible to antibiotics
Morphology of Rickettsiae:
▪ They are small Gram-negative coccobacilli.
▪ Size: 0.3-0.6 to 0.8-2 µm.
▪ Non-motile
▪ Non-capsulated
▪ Stains poorly with Gram stain
▪ Stains well with these stains:
▪ Deep red with Machiavello and Gimenez stain
▪ Bluish purple with Giemsa and Castaneda stain
Culture characteristics of Rickettsiae:
▪ Rickettsiae do not grow in cell-free media.
▪ Most Rickettsia grows in the cytoplasm inside the cell.
▪ Rickettsia causing spotted fever grows in the nucleus of the cell.
▪ Cell lines:
▪ HeLa, Hep2, Detriot-6, mouse fibroblasts, and other continuous cell lines.
▪ Chick embryo:
▪ Grows in the yolk sac of 5-6 days old chick embryo.
Human Infections Caused by Rickettsia:
Bacteria Diseases
Epidemic or louse-borne typhus; relapsing louse-
Rickettsia prowazekii borne typhus or Brill-Zinsser disease
Rickettsia typhi Endemic or flea-borne murine typhus
Rickettsia rickettsiae Rocky Mountain spotted fever
Rickettsia akari Rickettsial pox
Rickettsia conori Boutonneuse fever
1. Group-specific antigen:
▪ It is the soluble antigen.
▪ It is present on the surface of the organisms.
▪ From the repeated washings and centrifugation, it can be extracted.
2. Species- or strain-specific antigen:
▪ It is present in the cell wall of the bacteria.
3. Alkali-stable polysaccharide antigen:
▪ It is a surface antigen.
▪ It is present in some species of Rickettsia and some strains of Proteus (Proteus OX19, OX2 and
OXK).
▪ This sharing of antigen form the basis of the Weil-Felix test.
Pathogenesis of Rickettsioses
▪ Human rickettsiosis occurs when an infected tick or mite bites on the surface of the skin or through the
fecal-oral route from the ingestion of infected louse or flea feces.
▪ Infection occurs after the Rickettsiae invade the vascular endothelium, multiply in the cytoplasm, and
spread via the bloodstream to different parts of the body.
▪ It then infects the vascular endothelium and smooth muscle cell with an increase in immune-effector
responses.
▪ The disseminated infection increases the permeability of vascular cells and fluids are assembled in the
interstitial surroundings.
▪ It leads to a decrease in blood volume which might cause hypovolemic shock and death.
▪ Other affected vital organs are the brain, liver, lungs, heart, and adrenal glands causing diseases like
meningoencephalitis and interstitial pneumonitis.
▪ Infection can also occur by inhalation of the organisms or their feces which mainly occurs in laboratory
workers due to poor hygienic practices.
▪ When the kidney is infected, acute renal failure may occur due to a decrease in the perfusion of fluid.
▪ The vascular leakage of plasma into the alveolar spaces leads to gas exchange in the lungs and causes
hypoxemia.
▪ Cellular immunity of the host cell is important for inhibition of intracellular rickettsiae by killing it in
endothelial cells with the inducible nitric oxide production.
▪ The inducible nitric oxide is activated by the cytokines gamma interferon and tumor necrosis factor.
▪ Natural killer cells also produce immune responses against rickettsial disease and the humoral immune
response produces antibodies against the outer membrane protein and prevents reinfection.
▪ Vasculitis may lead to:
▪ Increased vascular permeability with consequent edema
▪ Loss of blood volume
▪ Hypoalbuminemia
▪ Reduced osmotic pressure
▪ Hypotension
Typhus Fever Group:
▪ Epidemic or louse-borne typhus caused by Rickettsia prowazekii
▪ Relapsing louse-borne typhus or Brill-Zinsser disease caused by prowazekii.
▪ Endemic or flea-borne murine typhus caused by Rickettsia typhi.
1. Epidemic or Louse-borne Typhus:
▪ It is caused by Rickettsia prowazekii.
▪ It is transmitted by the human body louse Pediculus humanus corporis causing the acute febrile
illness.
▪ It is named after the scientist Von Prowazek. He died of typhus fever while studying this
disease.
▪ prowazekii is an invasive bacterium.
▪ It leads to vasculitis by multiplying in the endothelial cells of blood vessels.
▪ The average incubation period is 8 days whereas it may vary low as 2-3 days.
▪ Characteristics of epidemic typhus:
▪ High fever
▪ Severe headache
▪ Chills
▪ On the 4 or 5th day, the petechial or macular rash appears
th
Bordetella pertussis
▪ Bordetella pertussis (Bordet-Gengou Bacillus; formally known as Hemophilus pertussis)
▪ The Bordetella spp are small, gram-negative coccobacilli with slight pleomorphism measuring 0.2-
0.3 μm by 0.5 to 1.0 μm.
▪ They appear singly, in pairs, and in small clusters.
▪ On primary isolation, cells are uniform in size, but in subcultures they become quite pleomorphic
and filamentous, and thick bacillary forms are common.
▪ It is nonmotile and non-sporing.
▪ Bipolar metachromatic staining may be demonstrated with toluidine blue.
▪ Capsules may be demonstrable in young, freshly isolated cultures only by special stains.
▪ In culture films, the bacilli tend to be arranged in loose clumps, with clear spaces in between
giving a ‘thumb print’ appearance.
▪ Freshly isolated strains of B. pertussis have fimbriae.
▪ It is an obligate aerobe.
▪ The optimum temperature for growth is 35-36°C.
▪ It does not require X and V factors for its growth.
▪ Complex media are necessary for primary isolation.
▪ The medium in common use is the Bordet-Gengou medium (potato-blood-glycerol agar).
▪ Primary isolation of B. pertussis requires the addition of charcoal, ion exchange resins, or 15-20
percent blood to neutralize growth-inhibiting effects.
▪ Potatoes impart a high starch content to the medium that neutralizes toxic materials.
▪ Glycerol acts as a stabilizing agent. Charcoal blood agar is a useful medium.
▪ The plates are incubated at 35-36°C in a moist environment (e.g., a sealed plastic bag).
▪ After incubation for 48-72 hours, colonies on Bordet-Gengou medium are small, dome shaped,
smooth, opaque, viscid, greyish white, refractile and glistening, resembling ‘bisected pearls’ or
‘mercury drops’.
▪ Colonies are surrounded by a hazy zone of hemolysis. Confluent growth presents an ‘aluminium
paint’ appearance.
▪ Subcultures of B. pertussis may be obtained on less exacting media, e.g. nutrient agar to which
charcoal or starch has been added.
▪ It is biochemically inactive.
▪ It does not ferment sugars, form indole, reduce nitrates, utilize citrate or split urea.
▪ It produces oxidase and usually catalase also.
▪ In human beings, after an incubation period of about 1-2 weeks, the disease takes a protracted
course comprising three stages-the catarrhal, paroxysmal and convalescent -each lasting
approximately two weeks.
▪ 1. Prodromal or Catarrhal Stage
▪ The first stage, the catarrhal stage, resembles a com- mon cold, with serous
rhinorrhea, sneezing, malaise, anorexia, and low grade fever.
▪ Clinical diagnosis in the catarrhal stage is difficult.
▪ During this stage, large numbers of organisms are sprayed in droplets, and the
patient is highly infectious but not very ill.
▪ This is unfortunate as this is the stage at which the disease can be arrested by
antibiotic treatment.
▪ 2. Paroxysmal Stage
▪ After 1 to 2 weeks, the paroxysmal stage begins.
▪ As the catarrhal stage advances to the paroxysmal stage, the cough increases in
intensity and comes on in distinctive bouts.
▪ During the paroxysm, the patient is subjected to violent spasms of continuous
coughing, followed by a long inrush of air into the almost empty lungs, with a
characteristic whoop (hence the name).
▪ The paroxysms of coughing may be so severe that cyanosis, vomiting and
convulsions follow, completely exhausting the patient.
▪ 3. Convalescent Stage
▪ After 2 to 4 weeks, the paroxysmal stage is followed by convalescence stage, during
which the frequency and severity of coughing gradually decrease but secondary
complications can occur.
▪ The disease usually lasts 6-8 weeks though in some it may be very protracted.
▪ Complications:
▪ Subconjunctival hemorrhage, subcutaneous emphysema, inguinal hernia or rectal
prolapse due to pressure effects during the violent bouts of coughing.
▪ Respiratory (bronchopneumonia, lung collapse)- Respiratory complications are self-
limited, the atelectasis resolving spontaneously.
▪ Neurological (convulsions, coma.)-neurological complications may result in
permanent sequelae such as epilepsy, paralysis, retardation, blindness or deafness.
Epidemiology of Bordetella pertussis:
▪ Whooping cough is predominantly a pediatric disease, the incidence and mortality being highest
in the first year of life.
▪ Maternal antibodies do not seem to give protection against the disease.
▪ Immunization should, therefore, be started early.
▪ The disease is commoner in the female than in the male at all ages.
▪ It is worldwide in distribution.
▪ It occurs in epidemic form periodically but the disease is never absent from any community.
▪ The source of infection is the patient in the early stage of the disease.
▪ Infection is transmitted by droplets and fomites contaminated with oropharyngeal secretions.
▪ Whooping cough is one of the most infectious of bacterial diseases and nonimmune contacts
seldom escape the disease.
▪ The secondary attack rates are highest in close household contacts.
▪ The disease is often atypical.
▪ In adolescents and adults and may present as bronchitis.
▪ They may serve as a source of infection in infants and children.
▪ Natural infection confers protection though it may not be permanent, and second attacks have
been reported.
Laboratory Diagnosis of whooping cough:
▪ Blood changes in the disease are distinctive and helpful in diagnosis.
▪ Pertussis typically causes an elevated white cell count, sometimes in excess of 50,000 cells/ μl
(normal range=4500-11000 white blood cells/μl during the latter part of the catarrhal or early
paroxysmal phase.
▪ A marked leukocytosis occurs, with relative lymphocytosis (total leukocytic counts 20,000-30,000
per/ μl with 60-80 percent lymphocytes).
▪ The erythrocyte sedimentation rate is not increased, except when secondary infection is present.
Three lab diagnosis methods are available:
1. Isolation of B. pertussis by culture from a pernasal swab;
2. Identification of the organism in a smear from a pernasal swab by immunofluorescence
microscopy;
3. Serological demonstration of specific antibodies in the patient’s serum.
1. Microscopy:
▪ Microscopic diagnosis depends on demonstration of the bacilli in respiratory secretions by the
fluorescent antibody technique.
2. Specimen Collection and Transport:
▪ Though the disease is mainly in the lower respiratory tract, the organism can be recovered
readily from the nasopharynx.
▪ ‘Cough plates’ and postnasal swabs are unsatisfactory because of overgrowth by commensal
bacteria.
▪ The optimal diagnostic specimen is a naso-pharyngeal aspirate.
▪ i. The Cough Plate Method
▪ Here a culture plate is held about 10-15 cm in front of the patient’s mouth during
about of spontaneous or induced coughing so that droplets of respiratory exudates
impinge directly on the medium.
▪ This has the advantage that specimen is directly inoculated at the bedside.
▪ ii. The Postnasal (Peroral) Swab
▪ Secretions from the posterior pharyngeal wall are collected with a cotton swab on a
bent wire passed through the mouth.
▪ Salivary contamination should be avoided.
▪ A West’s postnasal swab may be conveniently employed.
▪ Cotton swabs should not be used because they contain fatty acids that are toxic
to B. pertussis so it is preferable to use dacron or calcium alginate swabs for
specimen collection.
▪ iii. The Pernasal Swab
▪ A sterile swab on a flexible wire is passed gently along the floor of the nose until it
meets resistance.
▪ The swab, which will collect mucopus, is withdrawn and either plated immediately
on charcoal blood agar, or placed in transport medium.
▪ The use of transport medium reduces the isolation rate.
▪ A single swab may yield a negative culture, but isolation rates of up to 80 percent
may be achieved by taking specimens on several successive days.
▪ The pernasal swab has generally replaced the cough plates or post- nasal swabs
that were used in the past.
3. Culture:
▪ The swab is inoculated immediately on charcoalhorse blood agar and Bordet-Gengou medium
both with and without methicillin or cephalexin and incubated for at least seven days before
being discarded as negative.
▪ The specimen may be transported in Regan-Lowe semi-solid medium if delay in transport is
unavoidable.
▪ Plates are incubated in high humidity at 35-36°C and colonies appear in 48-72 hours.
▪ Typical ‘bisected pearl’ colonies appearing after 3-5 days must be investigated further.
4. Identification:
▪ Identification is confirmed by microscopy and slide agglutination with specific antisera.
▪ Immunofluorescence is useful in identifying the bacillus in direct smears of clinical specimens
and of cultures.
5. Detection of Bacterial Antigens:
▪ Bordetella antigens may be detected in serum and urine in tests with specific antiserum.
▪ Alternatively, bacteria in nasopharyngeal secretions are labelled with fluorescein-conjugated
antiserum and examined by ultraviolet microscopy.
▪ This method has the theoretical advantage, compared with culture, of detecting dead
bordetellae.
6. Polymerase Chain Reaction (PCR):
▪ Polymerase chain reaction (PCR) is used for the detection of bordetella DNA in nasopharyngeal
specimens, by the use of various primers with a sensitivity of 80 percent to 100 percent.
7. Serology:
▪ Rise in antibody titer may be demonstrated in paired serum samples by ELISA, agglutination.
▪ Complement fixation, immunoblotting, indirect hemagglutination, and toxin neutralization.
▪ Demonstration of specific secretory IgA antibody in nasopharyngeal secretions by ELISA has
been proposed as a diagnostic method in culture negative cases.
Treatment of whooping cough:
▪ B. pertussis is susceptible to several antibiotics (except penicillin).
▪ The drug of choice is erythromycin (or one of the newer macrolides such as clarithromycin),
which may reduce the severity of the illness if given before the paroxysmal stage.
▪ Chloramphenicol and cotrimoxazole are also useful.
▪ Treatment with pertussis immunoglobulin has been tried, but with limited success.
▪ Prophylaxis:
▪ Preventing the spread of infection by isolation of cases is seldom practicable as
infectivity is highest in the earliest stage of the disease when clinical diagnosis is
not easy.
▪ Treatment and Quarantine:
▪ Antibiotics and immunoglobulins currently available are not very effective for the
treatment of patients or the protection of contacts.
▪ Control of the disease by quarantine is unrealistic.
Vaccination for whooping cough :
▪ Specific immunization with killed B. pertussis vaccine has been found very effective.
▪ It is of utmost importance to use a smooth phase I strain for vaccine production.
▪ The vaccines in general use are suspensions of whole bacterial cells, killed by heat or chemicals.
▪ Adsorption of the bacteria on to an adjuvant, such as aluminium hydroxide, enhances the
immune response (particularly important with factor3) and also causes fewer adverse reactions.
▪ B. pertussis acts as an adjuvant for the toxoids (diphtheria and tetanus toxoid) producing better
antibody response.
▪ Infants and young children should be kept away from cases.
▪ Those known to have been in contact with whooping cough may be given prophylactic antibiotic
(erythromycin or ampicillin) treatment for 10 days to prevent the infecting bacteria to become
established.
▪ The best protection that can be given to an infant is to administer a booster dose of DPT/DT to
his siblings before he is born.
▪ Adverse Reactions:
▪ Pertussis vaccination may induce reactions ranging from local soreness and fever
to shock and neurological complications like convulsions and encephalopathy.
▪ Provocation poliomyelitis is a rare complication.
▪ Contraindications:
▪ If severe complications such as encephalopathy, seizures. ‘shock or hyperpyrexia
develop following the vaccine, subsequent doses of the vaccine are
contraindicated.
▪ Routine pertussis vaccination is not advisable after the age of seven years as
adverse reactions are likely and the risk of severe disease is low.
▪ Acellular Pertussis Vaccine:
▪ Acellular vaccines containing the protective components of the pertussis bacillus
(PT. FHA. agglutinogens 1, 2. 3) first developed in Japan, cause far fewer reactions,
particularly in older children.
▪ Both whole cell and acellular vaccines have a protection rate of about 90 percent.