3/31/23, 2:59 PM logistic.

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import numpy as np # linear algebra
import pandas as pd # data processing, CSV file I/O (e.g. pd.read_csv)

import numpy as np
import pandas as pd

import matplotlib.pyplot as plt
import seaborn as sns 
import pandas_profiling as pp 
import plotly.express as px

from sklearn.model_selection import train_test_split
from sklearn.preprocessing import MinMaxScaler
from sklearn.linear_model import LogisticRegression
from sklearn.metrics import classification_report,accuracy_score,f1_score,precision_score,recall_score,roc_curve,roc_auc_score

%matplotlib inline

df = pd.read_csv('/content/diabetes2.csv')

df_temp = df.copy()

df.head()

Pregnancies Glucose BloodPressure SkinThickness Insulin BMI Diabe

0 6 148 72 35 0 33.6

1 1 85 66 29 0 26.6

2 8 183 64 0 0 23.3

3 1 89 66 23 94 28.1

df.info()

<class 'pandas.core.frame.DataFrame'>
RangeIndex: 768 entries, 0 to 767
Data columns (total 9 columns):
# Column Non-Null Count Dtype
--- ------ -------------- -----
0 Pregnancies 768 non-null int64
1 Glucose 768 non-null int64
2 BloodPressure 768 non-null int64
3 SkinThickness 768 non-null int64
4 Insulin 768 non-null int64
5 BMI 768 non-null float64
6 DiabetesPedigreeFunction 768 non-null float64
7 Age 768 non-null int64
8 Outcome 768 non-null int64
dtypes: float64(2), int64(7)
memory usage: 54.1 KB

df.shape

(768, 9)

df["Outcome"].value_counts()

0 500
1 268
Name: Outcome, dtype: int64

df.isnull().sum()

Pregnancies 0
Glucose 0

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3/31/23, 2:59 PM logistic.ipynb - Colaboratory
BloodPressure 0
SkinThickness 0
Insulin 0
BMI 0
DiabetesPedigreeFunction 0
Age 0
Outcome 0
dtype: int64

# The visualisation of outcome
sns.catplot(x="Outcome", kind="count", data=df_temp, palette="Set2")
plt.show()

# The visualisation count of Age of their diabetics
ax = sns.catplot(x="Age", kind="count",hue="Outcome",data=df_temp, palette="pastel", legend=False)
ax.fig.set_figwidth(20)
plt.legend(loc='upper right', labels= ["Non diabetic", "Diabetic"])
plt.show()

# Age Distribution
fig = px.histogram(df, x="Age",
                   marginal="box")
fig.show()

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3/31/23, 2:59 PM logistic.ipynb - Colaboratory

100

80
count

60

# Age distribution by Outcome 0
fig = px.histogram(df, x=df[df.Outcome==0].Age,
40
                   marginal="box",
                   color_discrete_sequence=['lightgreen'])
fig.show() 20

0
20 30 40 50

80

60
count

40

20

0
20 30 40 50

# Age distribution by Outcome 0
fig = px.histogram(df, x=df[df.Outcome==1].Age,
                   marginal="box",
                   color_discrete_sequence=['purple'])
fig.show()

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3/31/23, 2:59 PM logistic.ipynb - Colaboratory

50
# Glucose distribution by Outcome 1
fig = px.histogram(df, x=df[df.Outcome==1].Glucose,
40
                   marginal="box",
                   color_discrete_sequence=['#AB63FA'])
fig.show()
30
count

20

10

35
0
20 30 40
30

25
count

20

15

10

0
0 50 100 150 200

# Average Glucose for Diabetics person
df[df.Outcome==1].Glucose.mean()

141.25746268656715

x = df_temp.drop(['Outcome'], axis = 1)
y = df_temp.loc[:,"Outcome"].values

x_train, x_test, y_train, y_test = train_test_split(x, y, test_size = 0.33, random_state = 123)

print(x_train.shape)
print(y_train.shape)
print(x_test.shape)
print(y_test.shape)

(514, 8)
(514,)
(254, 8)
(254,)
Code Text
lr = LogisticRegression(solver='liblinear', max_iter = 10) #solve=liblinear kaggle için gerekli
lr.fit(x_train, y_train)

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3/31/23, 2:59 PM logistic.ipynb - Colaboratory

/usr/local/lib/python3.9/dist-packages/sklearn/svm/_base.py:1244: ConvergenceWarning:

lr.fit(x_train, y_train)
Liblinear failed to converge, increase the number of iterations.

▾ LogisticRegression
/usr/local/lib/python3.9/dist-packages/sklearn/svm/_base.py:1244: Converge
LogisticRegression(max_iter=10, solver='liblinear')
Liblinear failed to converge, increase the number of iterations.

▾ LogisticRegression
LogisticRegression(max iter=10, solver='liblinear')

x_pred = lr.predict(x_train)

from sklearn.metrics import confusion_matrix
confusion_matrix(y_train, x_pred)

array([[311, 32],
[120, 51]])

#train score
score = accuracy_score(y_train, x_pred)
score

0.7042801556420234

y_pred = lr.predict(x_test)

confusion_matrix(y_pred,y_test)

array([[143, 61],
[ 14, 36]])

cm1 = confusion_matrix(y_test, y_pred)
sns.heatmap(cm1, annot=True, fmt=".0f")
plt.xlabel('Predicted Values')
plt.ylabel('Actual Values')
plt.title('Accuracy Score: {0}'.format(score), size = 15)
plt.show()

print(classification_report(y_test, y_pred))

precision recall f1-score support

0 0.70 0.91 0.79 157

1 0.72 0.37 0.49 97

accuracy 0.70 254

macro avg 0.71 0.64 0.64 254
weighted avg 0.71 0.70 0.68 254

# Defined data set (it should be diabetic)

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3/31/23, 2:59 PM logistic.ipynb - Colaboratory
# Defined data set (it should be diabetic)
data = [[5, 150, 33.7, 50, 150, 74, 0.5, 53]]

# Create the pandas DataFrame 
df_test = pd.DataFrame(data, columns = ['Pregnancies','Glucose','BloodPressure','SkinThickness','Insulin','BMI','DiabetesPedigreeFunction','A

# Predict on new data
res = lr.predict(df_test)
res

array([1])

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