18BTC106J Lab Manual
18BTC106J Lab Manual
DEPARTMENT OF BIOTECHNOLOGY
SCHOOL OF BIOENGINEERING
SRM INSTITUTE OF SCIENCE AND TECHNOLOGY
KATTANKUALTHUR -603202
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Immunology laboratory
List of experiments
1. Blood Grouping
2. Differential Leukocyte Count
3. Total Leukocyte Count
4. Widal Test
5. Rapid Plasma Reagin (RPR) Test
6. Single Radial Immunodiffusion (SRID)
7. Ouchterlony Double Diffusion
8. Rocket Immuno Electrophoresis
9. Counter Current Immunoelectrophoresis
10. Enzyme Linked Immunosorbent Assay (ELISA) – DOT
11. Enzyme Linked Immunosorbent Assay (ELISA) – Plate
12. Immunoprecipitation
13. Western Blotting
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ABO system consists of three allelic genes A, B & O. The A & B genes control the synthesis
of specific enzymes responsible for the production of the basic antigenic glycoprotein known
as the H substance. The O gene is an amorph and cannot transform the H substance. There is
no known specific anti O hence only four phenotypes are recognized.
Rhesus system
The Rh factor Ab was identified by Leving and Stetson. This is a complex system coded by
allelic genes at three closely related loci, alternative antigen Cc, Ee, together with D or no D
(recessive D) genes. So a person may inherit CDE from father and cde from mother and have
a genotype CDE/cde. Genotype cde/cde is Rh negative and all other genotypes are Rh
positive.
They are present in the serum of individuals who last the corresponding antigen and who have
not been transfused. Anti A and Anti B are most important, they are IgM immunoglobulins
reacting optionally at room temperature (cold antibodies).
Immune Antibodies
They are produced in response to introduction of red cells processing Ag which person lacks,
e.g. by transfusion or due to transplacental access. These are usually IgG Antibodies and
react best at body temperature (warm Ab). Rh Ab, anti D is a very important immune
antibody.
Agglutinins
These are two types i.e., anti A & anti B is also known as natural antibody (saline
agglutinating). While anti B is called immune antibody (albumin agglutinating).
H antigens
RBCs of all ABO groups possess a common antigen, the H antigen which is the precursor for
the formation of A and B antigen.
In 1900, Landsteiner first reported the presence of two antigen called A and B on the surface
of human red blood cells. Based on this discovery, he divided human blood cells into three
groups like A, B and O. Later in 1902, Decastell and Sturil recognized the existence of a
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fourth group called AB. Anti A and Anti B monoclonal IgM agglutinating sera are produced
by murine hybridoma cell lines grown in tissue culture. Each hybridoma produces a single
antibody with well defined characteristics and these antibodies are used either singly or
blended together with other monoclonal antibody to produce potent and useful reagents. Anti
A and Anti B are monoclonal IgM antibodies directed against human red blood cell antigens
A and B respectively.
About 95% individuals amongst Indian population and 85% of the individuals of Caucasian
origin possess D (Rh) antigen on their erythrocytes. Human red blood cells are classified as
“Rh-Positive” or “Rh-Negative” depending upon the presence or absence of this antigen on
their surface. Anti D (Rh) Monoclonal is used for the detection of presence of Rh antigen on
the red blood cells.
Principle
Human red blood cells possessing A and/or B antigen will agglutinate in the presence of
antibody directed towards the respective antigen. Agglutination of red blood cells with Anti
A Monoclonal, Anti B Monoclonal is a positive test result and indicates the presence of the
corresponding antigen. Absence of agglutination red blood cell with Anti A Monoclonal,
Anti B Monoclonal is a negative test result and indicates the absence of the corresponding
antigen.
Human red blood cells possessing D antigen are agglutinated by the antibody, directed against
D (Rh) antigen.
Sample
Blood collected with or without anticoagulant may be used. Carry out the tests as soon as
possible after collection. Store the samples at 2-8oC in case of any delay. Blood obtained by
finger puncture may be tested directly by the slide method, but to avoid clotting, blood
collected in this manner should be missed with the reagent quickly.
Precautions
1. Although the reagent contains a preservative, care should be taken to avoid extraneous
microbial contamination.
2. The optimal temperature for carrying out blood grouping reaction is 25 oC ± 5oC and
the tests should not be carried out at 37oC.
Procedure
In both modified tube and rapid slide test, it is advisable to include samples of known A, B
and D cells as controls with every batch to tests. Observe the control before reading the test
samples.
Caution
Interpretation
1. Agglutination of red blood cells by the reagent indicates a positive test result.
2. Absence of agglutination of red blood cells indicates a negative test result.
Anti D (Rh) RH
+ +
- -
Result:
The given blood sample is found to be
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Introduction
Differential leukocyte count is counting at least 100 cells (WBCs) and representing them in
percentage of the cells seen.
It can be prepared from anti-coagulated blood obtained by vein puncture or from the free
flowing blood by finger prick by a slide method.
(i) Head : It is the portion of blood film near the drop of blood.
(ii) Body : It is the main part if the bloody film
(iii) Tail : It is the main tapering end of the blood film
This is prepared for detecting blood parasites such as malaria and microfilaria
Romanawsky stains are universally employed for staining of blood films. All Romonawsky
combinations have essential ingredients that are methylene blue and eosin or azure.
Mehtylene blue is a basic dye and has affinity for acidic components of the cell like the
nucleus.
Eosin/azure is the acidic dye and has affinity for basic component of the cell like the
cytoplasm.
Most Ramonawsky stains are prepared in methyl alcohol so that thy combine fixation and
staining.
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Materials required
Glass slide, blood sample, leischman stain, distilled water, microscope and etc.
Protocol
1. A drop of blood was placed in the centre of a clean glass slide, 1 to 2 cm from one
end.
2. Another slide with a smooth edge (spreader) was placed at an angle of 30-35o near the
drop of blood.
3. The spreader was moved backward so that it made contact with the blood.
4. Then the spreader was moved. Rapidly over the slide.
5. A thin peripheral blood film was prepared.
6. It was then dried and stained.
1. 0.2g of powdered Leischmans dye was dissolved in 100ml of acetone free methyl
alcohol in a conical flask.
2. It was warmed to 50oC for half-an-hour with occasional shaking.
3. It was then cooled and filtered.
Staining
1. Leischmans stain was poured dropwise (counting the drops) on the slide and was kept
for 2 minutes. This allows the fixing of PBF in methanol.
2. Double the quantity of buffered water was added dropwise on the slide.
3. It was mixed by rocking for 8 minutes.
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An area was chosen near the junction of body with the tail of the smear where there is slight
overlapping of RBC i.e., neither there was rouleaux formation which occurred in head and
body nor there were totally scattered RBC as that occurred at the tail. By the movement of
the slide in horizontal directions under oil immersion the counting of the types of WBC was
done. The WBC were entered as P (Polymorphs), L (lymphocytes), M (Monocytes), E
(Eosinophils) and B (Basophils) in a box having hundred cubes expressed in the sequence of
P,L,M,E,B in percentage.
Polymorphs (Neutrophils)
Lymphocyte
Monocyte
Eosinophils
Basophil
Result
The given blood sample has
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Principle
A sample of whole blood is mixed with a weak acid solution that lyses nonnucleated red
blood cells. Following adequate mixing, the specimen is introduced into a counting chamber
where the white blood cells (leukocytes) in a diluted volume are counted
Procedure
(1) Draw well-mixed capillary or venous blood exactly to the 0.5 mark in a white blood cell
diluting pipet. This blood column must be free of air bubbles.
(2) Wipe the excess blood from the outside of the pipet to avoid transfer of cells to the
diluting fluid. Take care not to touch the tip of the pipet with the gauze.
(3) Immediately draw diluting fluid (3% acetic acid solution) to the "11" mark while rotating
the pipet between the thumb and forefinger to mix the specimen and diluent. Hold the pipet
upright to prevent air bubbles in the bulb.
(4) Mix the contents of the pipet for 3-5 minutes to ensure even distribution of cells. Expel
unmixed and relatively cell-free fluid from the capillary portion of the pipet (usually 4 drops).
(5) Place the forefinger over the top (short end) of the pipet, hold the pipet at a 450 angle, and
touch the pipet tip to the junction of the cover glass and the counting chamber.
(6) Allow the mixture to flow under the cover glass until the chamber is completely charged.
Similarly, fill the opposite chamber of the hemacytometer.
NOTE: If the mixture overflows into the moat or air bubbles occur, clean and dry the
chambers, remix the contents of the pipet, and refill both chambers.
(7) Allow the cells to settle for about 3 minutes. Under low-power magnification and reduced
light, focus on the ruled area and observe for even distribution of cells.
(8) Count the white cells in the four 1 sq mm corner areas corresponding to those marked A,
B, C, and D of Figure 1 in each of two chambers.
(9) Count all the white cells lying within the square and those touching the upper and right-
hand center lines. The white cells that touch the left-hand and bottom lines are not to be
counted. In each of the four areas, conduct the count as indicated by the "snake-like" line in
figure 5-1. A variation of more than 10 cells between any of the four areas counted or a
variation of more than 20 cells between sides of the hemacytometer indicate uneven
distribution and require that the procedure be repeated.
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Figure 1. Hemacytometer counting chamber (WBCs). Areas marked A, B, C, and D are used
to count white blood cells.
Calculation
(1) Routinely, blood is drawn to the 0.5 mark and diluted to the 11 mark with WBC diluting
fluid. All the blood is washed into the bulb of the pipet (which has a volume of 10).
Therefore, 0.5 volumes of blood are contained in 10 volumes of diluting fluid. The resulting
dilution is 1:20. (These figures are arbitrary and refer strictly to dilution and not to specific
volumetric measurements.)
(2) The depth of the counting chamber is 0.1 mm and the area counted is 4 sq mm (4 squares
are counted, each with an area of 1.0 sq mm therefore, 4 x 1.0 sq mm = a total of 4 sq mm).
The volume counted is: area x depth = volume. Four sq mm x 0.1 mm = 0.4 cu mm.
(3) The formula is as follows:
35 45
40 37
44 36
39 44
Result:
The given blood sample has ……………….. WBCs per cu mm
Normal Values
(1) Adults (both sexes): 4,500-11,500 WBCs per cu mm.
(2) Childhood: 6,000-14,000 WBCs per cu mm.
(3) Birth: 9,000-30,000 WBCs per cu mm.
Discussion
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4. WIDAL Test
Exp. No:
Date:
Introduction
The WIDAL test is a serological technique which tests for the presence of Salmonella
antibodies in the patients serum when facilities for culturing of antigen testing are not
available, the WIDAL test is performed for reliability and interpreted with care. It can be of
value in diagnosing typhoid and paratyphoid in endemic areas. It is of no value in the
investigation of Salmonella in food poisoning when the investigation is carried out for
typhoid, the patients serum is tested for ‘O’ (somatic) and ‘H’ (flagella) antibodies
(agglutinins) against the following antigen for O and H suspensions (stained suspensions)
In enteric fever, specific agglutinins are usually detectable in the patient’s blood after 6 days
of fever. Serum from individuals vaccinated with TAB may also show moderately elevated
titre of all three H agglutinins.
Stained Salmonella Antigens are used to detect, identify and quantitate specific antibodies in
serum sample from patients suffering from Pyrexia of Udermined Origin (PUO). These
antigens are standardized, smooth suspensions of killed bacilli which have been stained to
facilitate reading of agglutination. They are suitable to be used in the standard WIDAL tube
test as well as in the rapid slide test. They may also be used as control antigens while
carrying out serological identification of bacterial isolates from clinical specimens.
Principle
Sample
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Fresh serum, store at 2-8oC in case of any delay in testing. Serum should be clear and should
not be heated or inactivated.
Precautions
Procedure
The serum volumes in the quantitative slide test correspond approximately to the tube test
titre as:
0.02 1:80
0.01 1:160
0.005 1:320
The use of positive control serum, negative control serum and saline control in parallel with
unknown test serum is recommended to assure the laboratory worker that the antigens used in
the test area sensitive as well as specific and to show what results are to be expected in
positive and negative specimens.
Result
The given ……………………. sample is found to be positive / negative for
Interpretation
Agglutinin titre greater than 1:80 is considered significant and usually suggestive of infection,
whereas low titres are often found in normal individuals. A single positive result has less
significance as a definite evidence of infection. A moderate simultaneous rise in the titre of
all three H agglutinins is suggestive of recent TAB vaccination.
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5. RPR TEST
Introduction
Reagin antibodies are produced more rapidly than Treponemal antibodies. Serological testing
for diagnosis of Syphilis is based upon the detection of reagin type of antibody using
Cardiolipin antigen.
Syphilis is usually transmitted through genital organs, placenta and blood transfusions.
Hence, it is very essential to test every pregnant woman and blood donor, besides routine
suspected cases of Syphilis. Antibiotic therapy inhibits the production of regain antibody and
hence, the test also has prognostic importance during medication. RPR test is the
modification of VDRL test (Venereal Disease Research Laboratory).
The RPR (Rapid Plasma Reagin) Test is a non-treponemal test for the serological diagnosis of
syphilis. Specificity, reactivity and sensitivity are similar to that of classical VDRL Test. It
is a reliable, economical and rapid test which is easy to read without the help of microscope.
It is highly reproducible and hence it is recommended for the use as a screening test.
Principle
Sample
Reagent/accessories
RPR antigen suspension, Positive Control Serum and Negative Control Serum, Disposable
Plastic Cards, Disposable Plastic Droppers, Disposable Applicator Sticks, Antigen Delivery
Dropper (for delivering a drop of approximately 15-20 microliters) and rubber teats.
Precautions
3. The card must be rocked gently, since vigorous rocking may impair agglutination.
4. Drying of reagents on the card may also lead to erroneous results.
5. Discard hemolyzed or contaminated samples.
6. Do not use an excess of anticoagulants, such as potassium oxalate or sodium fluoride
which can lead to unreliable results.
7. RPR Test results should be read immediately after rotation of the card under a high
intensity lamp or strong day light.
Protocol
1. Place a drop of serum or plasma (50 microliter or 0.05ml) on the card with the help of
disposable serum dropper on to RPR test card. Spread to cover the entire circle.
2. Using the dispensing bottle/needle assembly allow one free falling drop (16ul) of
antigen to drop on to the test specimen (Do not restir).
3. Rotate the test card at 100rpm for 8 minutes.
4. Immediately after the 8 minutes, inspect the result visually in a good light.
Read the result under a strong source of light with a hand lens. Regardless of the degree of
reactivity and test result showing slight but definite clumping is reported as reactive or
positive.
Positive result
Black aggregates (Carbon) which may be deposited at the periphery of the liquid appearing
before the 4 minutes of rotation.
Negative result
Complete absence of black aggregates with a uniform grayish background at the end of 4 th
minute rotation.
Limitations
2. This method may give false positive results in the presence of diseases such as
leprosy, malaria, toxoplasmosis, infectious mononucleosis or lupus erythematosus or
if the sample is having high degree of bacterial contamination.
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Introduction
The single radial immuno diffusion (SRID) is a simple but sensitive method for quantitating
the antigens. It has been employed for estimation of immunoglobulin classes in the serum.
SRID test uses antibody incorporated in to the agarose and placing the antigen in the wells cut
the agarose. This is comparatively more sensitive than agar gel immuno diffusion tests.
PRINCIPLE
The test is based on the principle of antibody incorporated into the agarose and placing the
antigen in the wells. Antigen diffuses radially, forming a ring of precipitation around the well
and moves outwards eventually becoming stationary at equilence. At equivalence, the
diameter of the ring is related to the antigen concentration in the well. Using standard antigen
concentrations, a calibration curve may be constructed to determine the unknown
concentrations of the same antigen.
MATERIALS REQUIRED
PRECAUTIONS
PROTOCOL
NOTE: All the micropipettes should be well calibrated and the pipetting should accurate to
get optimum results.
1. Prepare1.0% agarose solution with the saline provided. Heat the solution in a boiling
water bath until agarose dissolve completely and no obvious particles of agarose should
remain in suspension.
2. Cool the molten agarose to bearable warm and mix 100µl of the antiserum with around
10ml of molten agarose and pour 9ml onto a microscopic slide provided that kept on
lavelled surface. The agarose would be about 3-4 mm thick. Avoid spillage, even a
little spillage cause the whole agarose get drawn from the slide due to capillary action.
3. The agarose slides can be stored 4°C until it is used immediately.
1. Using the template provided, cut six wells three on top and three below to that with
the gel punch. The well would be 3mm in diameter and 14mm from the edge of the
slide.
2. Cut the well in agarose after it has hardened sufficiently. Before cutting the wells
keep the slides at 2-8°C for a short period, So that the cut edges of the wells do not
break down when the agarose plugs are removed.
3. The agarose plugs can be removed from the wells using a fine gauge glass or metal
cannula attached to a vacuum line. Alternatively 20-gauge hypodermic needle can be
inserted in to the plug to lift it free of the agar.
C. FILLING WELLS
1. Add 10µl of neat antigen (undiluted) to the first well using a micropipette and mark it
as 1.
2. The antigen can be diluted two fold and add 10 µl to the remaining 4 wells
respectively. Take 50µl of normal saline in 4 wells of a 96 well microtitre plate. Add
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50µl of antigen to the first well of the microtitre plate, mix thoroughly then serially
diluted into another wells. Now you have antigen diluted to 1:2, 1:4, 1:8 and 1:16 in
four wells of the 96-well microtiter plate.50µl of diluted antigen from the last (fourth)
well of the microtiter plate can be discarded.
3. Now add 10 µl of the four diluted antigen to the 2nd, 3rd, 4th and 5th wells respectively
using a micropipette. This amount will fill the well without allowing it to overflow
into the adjacent well.
4. Add 10 µl of test antigen in the 6th (last) well.
5. After the wells are filled keep the plate in a flat-bottomed container such as a plastic
breadbox with a tight fitting cover. The interior of the container should be kept moist
by keeping a damp paper towel or wet cotton.
6. The slides can be held at room temperature or at 37°C in an incubator. Lower
temperatures may show the formation of precipitin lines and prolong the test. Allow
the plate to stand undisturbed in the humid box at room temperature for 8-12 hours.
1. Observe the slides after 24 hours. In most of the cases the reaction would have
reached a point where the results can be recorded by this time. In some cases, when
weak positive samples are involved it is recommended that the slides can be held for
an additional 24 hours to observe the result.
2. A high intensity light source or narrow beam of light is used to examine the precipitin
reaction. Also it is useful to view the reaction against a dark background.
3. The diameter of the precipitin ring will vary with the concentration of antigen in the
standard or sample.
F. RESULT
The concentration of given (T 1 or T2) test sample is ………………………..
G. INTERPRETATION
The quantity of the antigen can be established form the standard curve or software provided if
standard antigens with known concentrations are used in the test along with samples with
unknown antigen concentrations. This test is widely used to assess concentration of
immunoglobulin classes in serum using known antibody against each of the immunoglobulin
classes incorporated in the agarose gels.
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Introduction
Ouchterlony Double Diffusion technique is widely used for characterization and quantitation
of antigens or antibodies. This technique is based on the ability of antibody to from
complexes with specific antigen. This is a highly versatile technique, useful for identifying
and characterizing precipitating antigen-antibody systems. In this method, arranging wells
equidistant around a centre well allows the placement of decreasing concentrations of one
component (e.g. antibody) around the radially diffusing central well and makes tittering or
determining a relative strength for antibody solution possible.
This method is also employed to compare different antigens and antisera (antibody) directly.
If the antigens in adjacent wells are identical, the line of precipitation formed will fuse
smoothly at the junction. This is called ‘Line of Identity’ or line of fusion. If the antigens in
adjacent wells are unrelated, the lines will cross each other. This is called ‘Line of non-
identity’ or ‘line of intersection’. If the antigens in adjacent wells are partially related, there
will be a spur formation i.e., when one antigen and antibody form a homologous pair, and the
other antigen cross reacts fusion of two lines still occurs but a spur forms pointing towards the
cross reacting antigen, representing the reaction between homologous antigen and those
antibodies that do not combine with cross reacting antigen. This pattern is known as ‘line of
partial identity’. The AGPT requires 10-12 hours for yielding a result.
Principle
In Ouchterlony Double Diffusion technique a free diffusion of antigen and antibody takes
place in the gel, resulting in the formation of precipitin band. This can be visualized by the
naked eye. While immunodifussion tests are among the least difficult serological tests to
perform, it is still important that all the steps of the procedure be done with precise and
careful techniques.
Materials required
Antigen A, B & C, Antibody I, II & III, Agarose (low EEO), Glass Slide, Gel Punch,
Template, Normal saline, Distilled water, Conical Flask, Measuring cylinder, pipette,
Micropipette, tips. Etc.
Precautions
Protocol
1. Prepare a 1.0% solution of agarose in the normal saline provided. Heat the solution in
a boiling water bath until the agarose is completely dissolved and no obvious particles
or agarose remain in suspension. Cool the agarose solution to around 50 oC.
2. By using a glass pipette, add about 4.5 ml of molten agarose onto a glass slide kept on
a leveled surface. The agarose would be about 3-4mm thick. Avoid spillage, even
alittle spillage cause the whole agarose get drawn from the slide due to capillary
action.
3. The agaorse slides can be stored at 4oC unless it is used immediately.
1. Using the template provided cut three sets of wells in agarose gel with gel punch, after
the agarose has hardened sufficiently.
2. Before cutting the wells keep the slides at 2-8oC for a short period, so that the cut
edges of the wells do not break when the agarose plugs are removed.
3. Label the wells (first set) with marker as antibody I top well Antigen A and Antigen A
in the bottom two wells. In the second set Antibody II in the top, Antigen A and
Antigen B in the bottom wells. In third set Antibody III in the tip and Antigen A and
Antigen C in the bottom wells.
4. The agar plugs can be removed from the wells using a fine gauge glass or metal
cannula attached to a vacuum line. Alternatively 20–gauge hypodermic needle can be
inserted in to the plug to lift it free of the agar.
5. Optimal results are obtained if reagents are added to the wells just after the plugs are
removed.
1. The slides can be examined after 24 hours. In most of the cases the reaction would
have reached a point where the results can be recorded by this time. In some cases,
when weak positive samples are involved it is recommended that the slides can be
held for an additional 24 hours and reexamined especially.
2. A high intensity light source or narrow beam of light is used to examine the precipitin
reaction. Also it is useful to view the reaction against a dark background.
24
3. The type of reaction (precipitin line) will vary with the concentration of antibody
added.
Results
Introduction
Rocket immuno electrophoresis (RIE) has the need for antigen to be negatively charged for
electrophoretic movement within the agar matrix. Some proteins (immunoglobulins) are not
sufficiently charged to be quantitatively analyzed by RIE nor is it possible to measure the
amounts of several antigens in a mixture at the same time. In RIE, antigen migrates in an
electric field from a well into layer of agarose that contains antibody. A series of wells for
antigen samples is cut along one side of a glass plate that is coated with agarose containing
specific antibodies.
This technique is basically similar to single radial immunodiffusion test except that there is
considerable increase in sensitivity by passing the current. Quantitative estimation of antigen
is possible. However, in contrast to agarose gel immunodiffusion or
counterimmunoelectrophoresis, this test is mostly used to quantify the antigen concentration
rather than qualitative detection of antigen or antibody in the sample.
Principle
The antibody is incorporated in the agarose gel. The antigen is allowed to migrate towards
anode, while antibody migrates towards cathode under the influence of electric current.
Soluble complexes are formed at first, excess antigen migrates further, eventually equivalence
is reached and an insoluble precipitate is formed. A stable arc is formed when no more
antigens remains to either the precipitation, which becomes stationary. Rocket shapes of
precipitation are formed, the rocket in proportional to the concentration of antigen. For
quantitative reproaching measurements, rocket heights of 1 to 5cm are recommended.
Materials
- Tris 17.7g
- Barbitone sodium 9.9g
26
Antigens
Antibodies
Test antigens
Agarose (EEO-high)
Glass slide – 40mmx40mm
Gel punch
Template
Electrophoresis apparatus with power pack
Glass wares
Micropipette with tips
Protocol
Note: All the micropipettes should be well calibrated and the pipetting should be accurate to
get optimum results.
1. Prepare 1.0% solution of agarose with the buffer provided (Running Buffer
1x). Heat the solution in a boiling water bath until the agarose is completely
dissolved and no obvious particles of agarose remain in suspension.
2. Cool the molten agarose to bearable warmth and mix 75 microliters of the
antiserum with around 5ml of molten agarose and pour 4.5ml onto a glass
microscopic slide that kept on a leveled surface. The agarose would be about
3-4 mm thick. Avoid spillage, even a little spillage cause the whole agarose
get drawn from the slide due to capillary action.
1. Using the template provided, cut five wells at one end of the slide (1.5cm away
from the edge) with athe gel punch. The wells are 3mm in diameter and 5mm
interspace between the wells.
2. Cut the well in agarose after it has hardened sufficiently. Before cutting the
wells keep the slides at 2-8 C for a short period. This gives a clean cut edge of
the wells which won’t break down when the agarose plugs are removed.
3. The agarose plugs can be removed from the wells using a fine gauge glass or
metal cannula attached to a vacuum line. Alternatively 20-gauge hypodermic
needle can be inserted in to the plug to lift it free of the agarose.
4. If plates are not used immediately after they are cut, it will be necessary to
remove the moisture that tends to accumulate in the bottom of the wells.
5. Optimal results are obtained if reagents are added to the wells just after the
plugs are removed.
1. Add 10µl of neat antigen (undiluted) to the first well using a micropipette.
2. The antigen can be diluted two fold and loaded to the other wells. Take 50µl
of normal saline in 4 wells of a 96 well micortitre plate. Add 50µl of antigen
to the first well of the microtitre plate, mix thoroughly then serially diluted into
another wells. Now you have antigen diluted to 1:2, 1:4 and 1:8 in the three
wells of the 96-well microtitre plate. 50µl of diluted antigen from the last well
of the microtiter plate can be discarded.
3. Now add 10µl of the four diluted antigen to the 2nd, 3rd and 4th wells
respectively using a micropipette. This amount will fill the well without
allowing it to overflow into adjacent well.
4. Add 10µl of test antigen to the 5th well.
5. After the wells are filled keep the slide on the Electrophoresis Bridge of the
electrophoresis tank that has been filled with the running buffer provided (use
1x Running Buffer). The antigen containing wells should be placed on the
cathode (negative side) of the electrophoresis tank (Black terminal).
6. Connect the slide with filter paper strips (wicks) with the respective chambers
of the tank.
7. Electrophoresis at 8-9 mA or 50-100 Volts for 45 minutes to one hour. Wet
the wicks with the buffer in the tank frequently after every 10 minutes.
1. A high intensively light source or narrow beam of light is used to examine the
precipitin lines. Also it is useful to view the reaction against a dark
background.
2. The slides can be examined immediately after the run. A precipitin line in the
shape of a rocket will be seen at some height over the wells loaded with the
antigen.
3. The height of the rocket will vary with the concentration of antigen present in
the sample.
Optional: If the rockets are not clearly visible, dip the electrophoresed slide in 4% enhancer
solution. Add about 30ml of the enhancer solution into a 100mm petridish and keep the slide
for 5-10 minutes to observe the rockets more clearly. After enhancer treatment, in addition to
rockets, other uncomplexed antigen or antibody may also be seen as a thick ‘smudgy’ white
precipitate near the wells. This enhancer treatment is only temporary and is unable to store
the slides.
1. The presence of a rocket-shaped precipitin line indicates that the antigen added in the
wells has reacted with (specific to) the antibody incorporated in the gel. This test is
mostly used to quantify the antigen concentration in the sample.
2. The antigen concentration is proportional to the height of the rockets observed. The
height of the rocket in the diluted antigen-loaded well would be lower than the height
seen in undiluted (neat) antigen well.
3. To measure the heights of the rocket, to determine the test antigen concentration
compare with standard antigen rocket heights.
Introduction
In developing countries, this technique is extensively used for detecting the presence
of hepatitis associated antigen (HAA) in the donor’s blood collected for transfusion.
It is the same as immunodiffusion technique but the rates of migration of the antigen
and the antibody are expedited by placing the antigen (test specimen containing viral antigen)
and the antibody opposite the poles towards which they are attached (antigens migrates
towards anode and antibody towards cathode). Counter immunoelectrophoresis is a
modification of the Ouchterlony method (passive immunodiffusion) that speeds up migration
of an antigen and antibody by applying an electric current (active immunodiffusion). Most
bacterial antigens are negatively charged in a slightly alkaline environment, whereas
antibodies are neutral. This feature of bacterial antigens is exploited by counter current
immuno electrophoretic assays in which solution of antibody and sample fluid to be tested are
placed in small wells cut into slab of agarose on a glass surface. A paper or a fibre wick is
used to connect the two opposite ends of agarose to troughs of slightly alkaline buffer,
formulated for each Antibody-Antigen system. When an electric current is applied through
the buffer, the negative antigen moves towards positive electrode and therefore towards the
well filled with antibody. The neutrally charged antibodies move towards the negative
electrode by the flow of buffer. The entire procedure takes about an hour.
Any antigen for which antisera are available can be tested for countercurrent
immunoelectrophoresis. The sensitivity appears to be less than that of particle agglutination,
detecting approximately 0.01 to 0.05 mg/ml antigen which transforms to about 10 3
microorganism/ml of fluid. This technique is costly, large quantities of antigen and antibody
needs to be used and is more expensive than agglutination test.
Principle
Materials
30
1. Antigen
2. Antibody
3. Agarose (high EEO)
4. Running buffer 5x (make it to 1x with distilled water)
5. Glass slide
6. Gel punch
7. Electrophoresis with Power Pack, distilled water
8. Conical Flask
9. Measuring Cylinder
10. Pipette
11. Wicks (filter papers)
12. Micropipette and Tips
Precautions
Protocol
1. Prepare 1.0% solution of agarose in the buffer provided (Running Buffer 1x).
Heat the solution in a boiling water bath until the agarose is completely
dissolved and no obvious particles of agarose remain in suspension. Cool the
agarose solution to around 500C.
2. By using Glass Pipette, add about 4.5ml of molten agarose onto a glass
microscopic slide that kept on a leveled surface. The agarose would be about
3-4 mm thick. Avoid spillage, even a little spillage cause the whole agarose
get drawn from the slide due to capillary.
4. Two sets (positive & negative control) of wells are punched on the slide with
the gel punch using the template provided. The well would be 3 mm in
diameter and 5 mm interspace. The interspace between the wells is of utmost
importance for efficient formation of precipitin lines within 45 minutes.
5. Cut the well in agarose after it has hardened sufficiently. Before cutting the
wells keep the slides at 2-8 C for a short period. This gives a clean cut edge of
the wells which won’t break down when the agarose plugs are removed.
31
6. The agarose plugs can be removed from the wells using a fine gauge glass or
metal cannula attached to a vacuum line. Alternatively 20-gauge hypodermic
needle can be inserted in to the plug to lift it free of the agarose.
7. If plates are not used immediately after they are cut, it will be necessary to
remove the moisture that tends to accumulate in the bottom of the wells.
8. Optimal results are obtained if reagents are added to the wells just after the
plugs are removed.
9. Mark the antigen and antibody well, and add 15µl of antigen and antibody to
the respective wells in the first set (positive control).
10. In the other set of well (negative control) add 15µl of antigen and normal
saline respectively after marking them.
11. While filling the well, avoid overflow into the adjacent well.
12. After the wells are filled keep the slide on the Electrophoresis Bridge of the
electrophoresis tank that has been filled with the running buffer provided (use
1x Running Buffer). The antigen containing wells should be placed on the
cathode (negative side) of the electrophoresis tank (Black terminal).
13. Connect the slide with filter paper strips (wicks) with the respective chambers
of the tank.
14. Electrophoresis at 8-9 mAh or 50-100 Volts for 45 minutes to one hour. Wet
the wicks with the buffer in the tank frequently after every 10 minutes.
15. Disconnect the power supply and remove the slides and keep at room
temperature for 2-5 minutes.
16. A high intensively light source or narrow beam of light is used to examine the
precipitin lines. Also it is useful to view the reaction against a dark
background.
17. A precipitin line will be formed between the antigen and antibody wells
(positive control). The position of the line is determined by the relative
amounts of antigen and antibody.
32
Precipitin line
18. The presence of precipitin line (positive control) indicates that the antigen
added in the wells has reacted with (specific to) the antibody added adjacent to
it. This test is mostly used for the qualitative detection of antigen or antibody
in the sample.
19. In the second set (negative control) precipitation line doesn’t appear since no
antibody is added & hence no reaction happened.
20. The position of the lines may also vary depending on the relative
concentrations of antigen and antibody. As the serum dilutions increases the
position of the precipitin lines would get closer to the antiserum wells
indicating relative excess of antigen over antibody.
33
INTRODUCTION:
Enzyme immunoassays (EIA) were developed in the mid sixties for identification of
antigens in histological preparations analogous to immunofluroscence methods, identification
of precipitation lines obtained by immuno diffusion and immuno electrophoresis.
The observation that antigen or antibody can be immobilized on solid phases made it
possible to go in for quantification of immuno reactants in test tubes. An antigen is
specifically detected due to the discriminatory power of antibodies and a marker attached to
these antibodies indicates that such a reaction takes place. Enzymes are used as markers in
EIA since they have in contrast to fluorescent labels, have capacity of amplification.
Let the immunological reaction takes place, add substrate and determine production
conversion by enzymes. The amount of product indicates how much enzyme labeled immuno
reactant is incorporated for the complex. The visible colour reaction is indicator of final
product of test.
ELISA, also called enzyme linked immuno sorbent assay, employs antigens or
antibodies conjugated to enzymes in such a way that the immunological and enzymatic
activity of each component is maintained. These assays are very sensitive and give accurate
results. The estimation of results can be made either visually or spectrophotometrically.
In DOT ELISA, the antigen is coated on a membrane (instead of an ELISA plate) and
the end colour reaction is read visually. Thus it is a qualitative test indicating the presence or
absence of the antigen or antibody under test.
PRINCIPLE
ELISA is extremely sensitive and used to detect antigen or antibody. A variety of direct,
indirect and reversed assays have been described, most involve a solid phase ELISA. These
systems depend upon capacity of antigen/antibody to bind to inert carrier surfaces which form
an immuno adsorbent for subsequent attachment of antigen/antibody as the case may be. The
most successful and simple technique for measurement of antigen in serum and is also called
as sandwitch ELISA. The main components of ELISA are absorption of antibody to solid
face and washing off excess, unattached antibody, blocking of unabsorbed antibody with
BSA, addition of serum followed by incubation and then washing of excess unattached
antigen. Addition of enzyme labeled anti immunoglobulin conjugate again followed by
incubation and washing.
34
In most cases, enzyme used is HRP. Several soluble substrates have been used for peroxidase
enzyme (orthophenylin diammine dihydrochloride –ODP) or (Tetra methyl benzidene, TMP)
or [2, 2’-azyrodi (3-ethyl benzothiazoline -6 sulphonic acid –ABTS)]. Different substrates
give different colour after enzyme reaction.
For detection of antibodies, the known antigen is coated on the solid phase surface, (96 wells
plate.) and then test serum samples, properly diluted are added. After incubation, the surface
is washed and conjugate enzyme labeled species specific antibody is added which binds with
antibodies present in the test serum and can be detected by adding substrate which gives a
coloured reaction that can be seen by naked eyes or read in spectrophotometer.
For detection of antigen, the sandwich assay is preferred. In sandwich assay, antibody is
bound to solid phase. The antibody is known as capture antibody then the specimen
suspected for presence of antigen is added. After appropriate incubation, the surface is
washed and second antibody specific to the antigen is applied which is known as indicator
antibody. In indirect method, the secondary antibody should be raised in different animal
species with that of capture antibody. The reaction is detected by applying substrate (enzyme
which gives a coloured reaction).
The enzyme linked immuno sorbent assay had a series of changes, enhancing its efficiency
and reducing its cost, in a regular manner, over a period of time.
Antigen detection
Direct ELISA
Antigen is coated on the solid surface and the test serum is added (Antibody along with
enzyme conjugate).
Indirect ELISA
Antigen is coated with the solid surface and specific antibody is added. Antibodies raised for
specific antibody is added on top. If this triplet is specific, there is a positive result.
35
Antibody detection
Antibody is coated for the specific suspected antibody and then the test material is added.
Detector antibody is added along with the enzyme.
Indirect ELISA
Antibody is coated on the surface and test antigen is added. Detector antibody is added and
antibody with enzyme is added.
MATERIALS
To prepare 2% blocking solution, take 5ml of 1xPBS and add 100mg of blocker
provided and mix well.
ii) SUBSTRATE
With the given substrate quantity, add 1ml of triple distilled water and mix well by
repeat pipetting. To this 1ml again add 29ml of distilled water. Aliquot these 30ml stock
solutions into 3 separate 10ml storage tubes and wrap it with aluminium foil and store at -
20oC for subsequent usage. This will avoid the loss of effectiveness of the substrate stock
solution at the time of thawing for the subsequent usage of each test.
36
Now before each test prepare this following step freshly. Take 10ml of the substrate
stock solution and mix with 10µl of hydrogen peroxide.
D. PROTOCOL
Note: All the micropipettes should be well calibrated and the pipetting should be accurate to
get optimum results. Any small variations would lead to major differences in the optical
density values.
Coating
Coating of the antigen on the nitrocellulose membrane involves 1µl of the antigen placement
on the strips and keeping it for passive adsorption at 37oC in incubator for at least 45 minutes.
By this time the antigen gets adsorbed onto the membrane. Leave one strip empty without
adding antigen for negative control.
Washing
PBST – Phosphate buffer Saline Tween 0.2M PBS (pH7.2) containing 0.2 Tween 20
The concept of ELISA involves separation of bound and free reagents with the washing step.
The unadsorbed antigens need to be removed by washing thrice. Washing is done by dipping
the strips in the washing buffer and shaking it vigorously. The wash buffer provided can
either be poured in to a petri dish or a 96-well plate and the strips immersed in it. Repeat this
washing thrice in between every step of reagent addition and incubation.
Blocking
After coating and removal of unbound antigens, the remaining sites on the membrane have to
be blocked to avoid direct binding of antibody or conjugate which would lead to false colour
reactions. Hence add 300µl of the blocker solution provided in the required number of wells
of a 96-well plate (depending on the number of strips tested) and dip the strips in it. Incubate
the strips at 37oC for 45 minutes.
Washing
The concept of ELISA involves separation of bound and free reagents with the washing step.
The unadsorbed antigens need to be removed by washing thrice. Washing is done by dipping
the strips in the washing buffer and shaking it vigorously. The wash buffer provided can
either be poured in to a petri dish or a 96-well plate and the strips immersed in it. Repeat this
washing thrice in between every step of reagent addition and incubation.
Serum incubation
After washing the strips, add 200µl of the diluted serum (1:50 in phosphate buffered saline).
For example add 12µl of serum in 588µl of 1x PBS this gives 1:50 dilution) in to the required
37
number of wells of the 96-well plate. Dip the strips in the serum in wells and incubate at
37oC for 45 minutes. Use phosphate buffered saline as negative control and dip one of the
strip in the buffer instead of serum. If the serum has antibodies specific to the antigen
adsorbed on to the membranes, they would bind. If not, the unreacted antibodies would be
removed by washing.
Washing
The concept of ELISA involves separation of bound and free reagents with the washing step.
The unadsorbed antigens need to be removed by washing thrice. Washing is done by dipping
the strips in the washing buffer and shaking it vigorously. The wash buffer provided can
either be poured in to a petri dish or a 96-well plate and the strips immersed in it. Repeat this
washing thrice in between every step of reagent addition and incubation.
Conjugate Incubation
After washing the strips, add 200µl of the diluted conjugate provided (1:1000 in phosphate
buffered saline), to the required number of wells of a 96-well plate. Dip the strips in to the
conjugate containing wells and incubate at 37oC for 45 minutes. The conjugate would bind to
the antibody in the serum, only if they had bound to the antigen. If there were no antibodies
in the serum, then no binding would have occurred and hence no binding of the conjugate
would take place. All the unreacted conjugate would be removed by the washing.
Washing
The concept of ELISA involves separation of bound and free reagents with the washing step.
The unadsorbed antigens need to be removed by washing thrice. Washing is done by dipping
the strips in the washing buffer and shaking it vigorously. The wash buffer provided can
either be poured in to a petri dish or a 96-well plate and the strips immersed in it. Repeat this
washing thrice in between every step of reagent addition and incubation.
Substrate addition
- diamminobenzidine
- orthopheny hydrochloride
- tetramethyl benzidene
- ABTS- Azinobis ethyl (benzthiozoline sulphonic acid)
- Amino salicylic acid
For β-D-galactosidase
Add 200µl of the substrate solution into the wells of 96-well plate and incubate the strips in
the solution at 37oC for 10 minutes. After washing the strips in tap water leave it air dry for
few minutes.
The appearance of brown/purple dot indicates the presence of antibody to the antigen in the
serum tested. The absence of a brown dot indicates negative reaction. No colour should be
seen in the membrane where in phosphate buffer saline was added instead of serum.
39
Procedure
Antigen Coating
Prepare an standard antigen and test sample in PBS.
Pipette 0.1 ml of the above solution to each well of the microtiter plate.
Incubate at 37 °C for 30 min., or incubate (covered) overnight at 4 °C.
Remove the coating solution. Wash three times with PBS-T.
Note: If problems with non-specific binding occur, an additional blocking step (30 min. 5%
BSA-PBS) may be required. For further information see: Vogt, R.F., et al., J. Immunol.
Meth., 101, 43 (1987).
Primary Antibody Reaction
Dilute the monoclonal primary antibody in PBS-T. The optimal dilution should be
determined using a titration assay.
40
Add 0.1 ml of the diluted monoclonal antibody to each well. The negative control should
be species- and isotype-matched, non-specific immunoglobulin diluted in PBS-T.
Incubate at room temperature for 30mins.
Wash as in step 4 of Antigen Coating.
Application of Secondary Antibody
Dilute the enzyme-conjugated secondary antibody in PBS-T. Add 0.1 ml of this solution to
each well. The optimal dilution should be determined using a titration assay.
Incubate at room temperature for 30 mins.
Wash as in step 4 of Antigen Coating.
Substrate Preparation
During the last incubation and immediately before use, prepare the enzyme substrate.
Development
Add 0.1 ml of the freshly prepared substrate to each well.
Color should develop in positive wells after 30 minutes (blue color).
Absorbance may be read directly in a microplate reader (630-650 nm. Recommended
wavelength is 650 nm) or the reaction may be stopped with 50 µl per well of the appropriate
stopping reagent.
Results:
Inference:
41
12. IMMUNOPRECIPITATION
Introduction
Immunoprecipitation (IP) is one of the most widely used immunochemical techniques.
Immunoprecipitation followed by SDS-PAGE and immunoblotting, is routinely used in a
variety of applications: to determine the molecular weights of protein antigens, to study
protein/protein interactions, to determine specific enzymatic activity, to monitor protein post-
translational modifications and to determine the presence and quantity of proteins. The IP
technique also enables the detection of rare proteins which otherwise would be difficult to
detect since they can be concentrated up to 10,000-fold by immunoprecipitation.
In the IP method, the protein from the cell or tissue homogenate is precipitated in an
appropriate lysis buffer by means of an immune complex which includes the antigen
(protein), primary antibody and Protein A-, G-, or L-agarose conjugate or a secondary
antibody-agarose conjugate. The choice of agarose conjugate depends on the species origin
and isotype of the primary antibody. The methods described are comparable and the choice of
method depends on the specific antigen-antibody system.
6.Eppendorf tubes
7.Table top centrifuge
Procedure
A. Preparing Agarose beads
Wash agarose conjugate twice with washing buffer, centrifuge for 10 sec. at 12,000xg at
room temperature. Discard supernatant.
Note: If agarose conjugate is a powder, reconstitute it with deionized H 2O and allow it to
swell for 5 minutes.
Resuspend agarose conjugate in washing buffer (50% suspension). - See more at:
C. Immunoprecipitation
Pipette our agarose conjugate of 50-100 µl in microcentrifuge tubes.
Add to each tube 10 µl of primary antibody at appropriate dilution (1:10).
Incubate for 15-60 min at room temperature, gently mixing the sample on a suitable shaker.
Centrifuge at 3,000xg for 2 min. at 4 °C. Discard supernatant.
Wash samples each with 1 ml washing buffer, centrifuge at 3,000xg for 2 min. at 4 °C.
Repeat
this step at least twice.
Add to each tube 0.1-0.5 ml of cell lysate (protein concentration 100-1000ug).
Incubate for 90 min. to overnight at 4 °C, gently mixing the sample on a suitable shaker.
Collect immunoprecipitated complexes by centrifugation at 3,000xg for 2 min. at 4 °C.
Discard supernatant.
Wash pellet with 1 ml washing buffer, centrifuge at 3,000xg for 2 min. at 4 °C. Repeat this
step at least 3 times.
Results:
Inference:
44
Introduction
Western blotting also known as protein or immunoblotting is a rapid and a sensitive assay for
detection and characterization of proteins. It works by exploiting the specificity inherent in
antigen-antibody recognition. It is used to identify specific antigens recognized by polyclonal
of monoclonal antibodies.
Western blotting is carried out along with protein (antigen) separation in gel by
electrophoresis and the blot development.
Principle
Identification of proteins separated by gel electrophoresis is limited by the small pore size of
the gel, as macromolecular probes for protein analysis cannot permeate the gel. This
limitation is overcome by blotting the proteins onto an adsorbent porous membrane (usually
nitrocellulose). The apparatus consists of a tank containing buffer, in which is located a
cassette, clamping the gel and the membrane tightly together. A current is applied from
electrodes located on either side of the cassette. The buffer is often cooled during transfer to
avoid heating effects. The proteins are separated according to their electrophoretic mobility
and blotted onto the membrane and identified using suitable immunochemicals to locate the
protein of interest. The individual techniques are explained below.
SDS PAGE
Stage I
Prepare a PAGE gel slab and fix to a vertical electrophoresis apparatus. Treat sample with
suitable buffer and load on to the gel slots.
Stage II
Apply electric current. After a few minutes, proteins in the sample migrate according to their
electrophoretic mobility in the stacking gel. The stcking gel has a lower polyacrylamide
concentration resulting in higher pore size and a lower pH (<7). This enables the protein to
concentrate into a sharp band due to isotachophoresis or band sharpening effect. At the end
of the stacking gel it meets the separating gel, which has a higher polyacrylamide
concentration and higher pH. IN the separating gel the proteins travel according to their size.
Stage III
When the dye front reaches the bottom of the separating gel, the proteins in sample are
resolved depending on their size. However the protein cannot be visualized directly. The gel
needs to be stained with suitable stainer to visualize all the proteins. Th identification of
protein of interest can be done using a suitable probe and a developing system.
45
Western Blotting
Blotting is the transfer of resolved proteins from the gel to surface of a suitable membrane.
This is done commonly by electrophoresis (known as electroblotting). IN this method, the
transfer buffer has a low ionic strength, which allows electrotransfer of proteins. Methanol in
the buffer increases binding of proteins to nitrcellulose and reduces swelling of the gel during
transfer. The use of membranes as a support for protein enables the ease of manipulation,
efficient washing and faster reaction during the immunodetection as proteins are more
accessible for reaction.
(a) Membrane is in close contract with PAG gel containing proteins. The proteins are
elctrotransfered to NC membrane.
The protein is transferred to the corresponding position on the membrane as on the gel. A
mirror image of the gel is formed. However the protein location and detection can only be
assessed after immunodetection.
Immunodetection
The transferred proteins are bound to surface of NC membtrane and are accessible for
reaction with immunochemical reagents. All the unoccupied sites on the membrane are
blocked with inert proteins, detergents or other suitable blocking agents. The membrane is
then probed with a primary antibody to the protein of interest. An enzyme labeled secondary
antibody and a suitable substrate to the enzyme identifies the antigen antibody complex
formed on the membrane.
Precautions
Preparation of reagents.
o Blotting buffer: Add 25ml of blotting buffer component A and 25ml component B to
450ml distilled water.
o Other buffers: Dilute the required amount of buffer concentrate to 1X concentration
with water.
o Antibody: Diluted primary antibody and labled second antibody HRP conjugate in
assay buffer.
o Substrate: Dilute TMB/H2O2, 10X concentrate ten times with water just before use.
o Protein standard: Mix 25µl of standard with 25 µl of sample loading buffer and
incubate at 80°C for 10min..
o Blocking buffer: Add 300 mg of blocking agent to 10ml of 1X diluent and mix.
Procedure
1.1 Assemble the plates for casting gel by placing the spacers onto the base plate and the
notched plate onto the top of spacers. Now the spacers will be between the base plate and the
notched plate. Apply silicon grease to the spacer for a good water-tight seal. Clean the
comps with water and ethanol.
Transfer the assembled plate into a gel casting apparatus. Ensure that the assembly is leak
proof by filling water between the plates. The plates should be clean and free of detergents.
Add 1ml of water to the APS vial.(stable for 1month)
Mix 50 µl of APs with 5ml of separating gel mix.
Pour separating gel between the plates till the level is below 3-4 cm from the
top of notched plate. Add 200 to 250 µl of water to make the surface even.
Allow the separating gel to set (about 20-30min.). Wash the top of the
separating gel with distilled water and drain water completely.
Mix 20 µl of APS solution with 2ml of stacking gel mix and pour directly onto
the polymerized separating gel. Insert an appropriate comb into the gel
solution without trapping any bubbles about 1cm above the separating gel.
Allow the stacking gel to set about 10min.).
Add 30 µl of distilled water and 30 µl of sample loading buffer to protein
sample.
Add 25 µl of sample loading buffer to 25 µl protein standard.
Incubate protein standard and protein sample in water bath at 85-95°C for10
min.
Once the stacking gel has set, remove the comb carefully. Wash the wells
immediately with distilled water to remove non-polymerized acrylamide.
Straighten the teeth of the stacking gel, if necessary, and fix to a appropriate
PAGE apparatus with Trisglycine buffer in the bottom reservoir. Remove any
air bubbles trapped between the plates at the bottom of the gel by squirting
Tris-glycine buffer through a syringe with a bent needle. Add Tris-glycine
buffer to top reservoir.
Load 30 µl-processed protein standards in well # 1 and 50 µl of processed
protein sample in well # 2 &10 µl of protein sample to well # 4. The samples
can be conveniently loaded using either a microliter syringe (wash by pipetting
the buffer in the bottom reservoir before loading each sample) or a
micropipetter fitted with a long narrow tip.
Start electrophoresis at 50-150 V.
When the dye front is about to reach the bottom of the gel, turn off the power.
Remove the glass plates from apparatus and gently separate the plate-using
spatula. Cut a corner from the bottom of the gel that is closest to the well # 1
for identification. Cut the gel along lane 3 and keep the lane 4 (protein
sample) in blotting buffer and proceed for electroblotting immediately.
Transfer the gel containing protein standard and sample (Lane 1 & 2) to a
glass or plastic tray containing a minimum of 20 ml of ezee blue stain. Stain at
room temperature for overnight. (no distaining required)
View the gel against a bright background.
2 Electroblotting
2.1 Assemble the blotting sandwich within the blotting cassette as shown in the figure.
Take care to avoid air bubbles between the gel and NC membrane.
2.2 Insert the cassette into the apparatus filled with blotting buffer such that the gel faces
the cathode.
47
2.3 Connect the power supply. Set voltage to 35 V overnight or 50 V for 5 hours for
blotting.
3 Immunodetection
3.1 Remove the NC membrane gently from the cassette and place the membrane in
freshly prepared blocking buffer for 2 hours at room temperature or overnight in the
cold.
3.2 Suspend primary antibody in 10 ml with the assay buffer using suitable tube.
3.3 Immerse blot in the primary antibody solution and agitate gently for 30 min.
3.4 Wash the blot by immersing in wash buffer for 3-5 minutes. Repeat two more times.
3.5 Prepare a 1:1000 dilution of labeled antibody in assay buffer. Prepare a sufficient
(10ml) volume of diluted antibody to cover the blot.
3.6 Immerse the blot in the labeled second antibody solution and aditate gently for 30
min.
3.7 Wash the blot by immersing in wash buffer for 3-5 minutes. Repeat four times.
3.8 Immerse the washed blot in 10ml of substrate solution with gentle shaking. Bands
should develop sufficient color within 5-10 minutes.
3.9 Remove the blot, wash with distilled water and dry.
3.10 Although the colored bands fade with time, the rate of color loss can retarded if the
blots are kept in the dark.
Interpretation
The band on the nitrocellulose membrane indicates the proteins identified by antibody
(anti TGF beta R2). The position of the bands on the membrane indicates its
electrophoretic mobility during electrophoresis.
48
FLOW CHART
50 µl APS mix with 5ml separating gel mix and pour between the
plates
Allow the gel to polymerise and wash the top of the gel
20 µl APS mix with 2ml stacking gel mix, pour above the
separating gel, insert comb and allow to polymerise
ELECTROBLOTTING
IMMUNODETECTION
Wash
Wash