B Pharm Sem 2
B Pharm Sem 2
Table of Content
Topic
Ultraviolet–Visible Spectroscopy
UV-Spectrophotometer
Applications
Fluorimetry
Instrumentation of Fluorometer
Applications
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for their propagation and can travel through empty space as well as through air and other
substances. Each type of electromagnetic radiation has a dual nature- wave like nature and
particle like nature. The particle nature has been established by the fact that the energy of
particular radiation occurs in discrete packets or quanta known as photons. Each photon contains
a certain amount of energy. The different types of radiation are defined by the amount of energy
found in the photons. The energy associated with particular electromagnetic radiation is directly
proportional to its frequency. The photons with the highest energy correspond to the shortest
wavelengths.
E1 – E2 = E = hν = hc/λ
Where E is energy of electromagnetic radiation being absorbed, h is the universal Planck’s
constant, 6.624 x 10-27 J sec and ν is the frequency of incident light in cycles per second (cps or
hertz, Hz), c is velocity of light 2.998 x 1010 cm s-1 and λ = wavelength (cm)
Higher is the frequency, higher would be the energy and on the other side, longer is the
wavelength, lower would be the energy. As we move from Gamma rays to ultraviolet region to
infrared region and then radio frequencies, we are gradually moving towards regions of lower
energies. However, almost all the parts of electromagnetic spectrum are used for understanding
the matter, in organic chemistry we are mainly concerned with energy absorption from only
ultraviolet and visible, infrared, microwave and radiofrequency regions.
Ultraviolet–Visible Spectroscopy
UV-Visible spectroscopy deals with the study of the electronic transitions of molecules as they
absorb light in the UV (190-400 nm) and visible regions (400-800 nm) of the electromagnetic
spectrum. The absorption of ultraviolet or visible radiation lead to transition among electronic
energy levels, hence it is also often called electronic spectroscopy.
As a rule, the energetically favored electron promotion will be from the highest occupied
molecular orbital (HOMO) to the lowest unoccupied molecular orbital (LUMO). The resulting
species is said to be in an excited state. The wavelengths at which absorption occurs,
together with the degree of absorption at each wavelength is recorded by optical spectrometer.
A spectrum is obtained as a result. It commonly provides the knowledge about π-electron
systems, conjugated systems, aromatic compounds and conjugated non-bonding electron
systems etc.
electron from one of the three Fig 2: Electronic Transitions in UV/VIS spectroscopy ground
states (σ, π, or n) to one of the two excited states (σ∗, or π∗) takes place. As a result, there are six
possible transitions- σ to σ∗, σ to π∗, π to π∗, π to σ∗, n to π∗, n to σ∗.
evacuated spectrophotometer (< 200 nm) since oxygen present in air absorbs strongly at 200 nm
and below. Similarly nitrogen absorbs at ~150 nm and below.
2) π to π∗
The transition of an electron from a π bonding orbital to a π∗ antibonding orbital is designated as
π to π∗ transition. These types of transitions take place in compounds containing one or more
unsaturated groups like simple alkenes, carbonyl, aromatics, nitriles, nitro etc. These transitions
require lesser energy than n to σ∗ transitions. In non-conjugated alkenes, this type of transition
occurs in the range 170-190 nm e.g. ethane shows absorption maxima at 171 nm. Similarly, π to
π∗ transition in the range of 180-190 nm occurs in non-conjugated carbonyl compounds e.g.
acetone shows absorption maxima at 188 nm.
3) n to σ∗
The transition of an electron from a non-bonding orbital to the antibonding sigma orbital is
designated as n to σ∗ transition. Saturated compounds containing atoms with lone pairs (non-
bonding electrons) like saturated alcohols, amines, halides, ethers etc are capable of showing n
to σ∗ transitions.
Energy required for these transitions is usually less than σ to σ∗ transitions. Such compounds
absorb light having wavelength in the range 150-250 nm. For example the absorption maxima
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for water, methyl alcohol, methyl chloride and methyl iodide are 167 nm, 174 nm, 169 nm and
258 nm, respectively.
4) n to π∗
The transition of an electron from a non-bonding orbital to a π∗ antibonding orbital is designated
as n to π∗ transition. This transition involves the least amount of energy in comparison to all
other transitions and therefore gives rise to an absorption band at longer wavelength.
Saturated carbonyl compounds show two types of transitions, low energy n to π∗ (270-300 nm )
and high energy π to π* (180-190 nm). The transition n to π∗ is of lowest energy but is of low
intensity as it is symmetry forbidden. Thus the most intense band for these compounds is always
due to π to π* transition.
1.
Selection Rule
Some electronic transitions, which are otherwise theoretically possible, are generally not
observed in the UV/VIS spectroscopy. Therefore there are some restrictions which govern the
observable transitions.
1. Transitions, which involve change in the spin quantum number of an electron during the
transitions do not occur, i.e. singlet-triplet transitions are not allowed.
2. Transitions between orbitals of different symmetry do not occur. For example,
transition
3. n to π∗ is forbidden because the symmetry of n and π∗ do not match.
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UV-Spectrophotometer
Spectrophotometer is a kind of spectrometer, which measures the transmittance or absorbance of
a sample as a function of wavelength, when light of certain intensity and frequency range is
passed through the sample. Unlike a spectrometer (which is any instrument that can measure the
properties of light over a range of wavelengths), a spectrophotometer measures only the intensity
of light as a function of its wavelength. The key components of a spectrophotometer are:
• Light source
• Monochromator
• Sample area
• Detector and Recorder
Light Source
The most suitable sources of light are
1. Deuterium lamp which emits the light in the UV-region (160-375 nm)
2. Tungsten lamp or tungsten-halogen lamp which emits
radiation in the Visible and near infrared regions (350-2500 nm)
3. Xenon arc lamp which emits radiation in the range 190-800 nm
4. Light emitting diodes (LED) which emits radiation in the visible range 400-800
nm.
The instruments automatically swap lamps when scanning between the UV and UV-VIS regions.
Monochromator
The main function of the monochromator is to disperse the beam of light obtained from the
primary source, into its component (Figure 3). The principle components of monochromator are
• An entrance slit
• A collimating lens
• A dispersing device
• A focusing lens
• An exit slit
The radiation emitted from the primary source (polychromatic radiation) enters the
monochromator through the entrance slit. The beam is collimated and then strikes the dispersing
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element (Prism or grit) at a particular angle. Two types of dispersion devices viz. prisms and
holographic gratings (Figure 4) are commonly used in UV-visible spectrophotometers.
Sample area
One of the two divided beams is passed through the sample solution and the other beam is
passed through the reference solution. Although, the samples for recording spectra are most
commonly liquids, but the absorbance of gases and even of solids can be measured. Both
sample and reference solutions are placed in a transparent cell, known as cuvette. The cuvettes
are rectangular in shape, and usually have an internal width of 1 cm (Figure 5).
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take place. These emitted electrons are then accelerated towards the many dynodes. The first
dynode is 90V more positive than the cathode. The electrons strike the first dynode, causing the
emission of several electrons for each incident electron. These electrons are then accelerated
towards the second dynode, to produce more electrons which are accelerated towards dynode
three and so on. Finally all the electrons are collected at the anode. Several dynodes are
arranged between the anode and the cathode to produce an amplification effect. Each photon
usually produces 106-107 electrons, resulting in the amplified current that can be measured.
Sample Preparation
The UV-Vis spectra are usually measured in very dilute solutions. Usually 1 mg of the
compound of molecular weight of 100-200 is dissolved in 100 ml of suitable solvent and only a
portion is used for recording the spectra. The solvent should not absorb radiation and must be
transparent over the desired range of wavelength. The solvents, which do not contain conjugated
system, are most suitable for recording the UV-spectra. The solvent should also be inert to the
sample. Some commonly used solvents are water, 95% ethanol, methanol and hexane.
Absorption Laws
When the radiation passes through a solution, some amount of light is absorbed. Suppose I0 is
the intensity of the incident radiation and I, the intensity of the transmitted radiation.
The amount of radiation absorbed can be
measured by Transmittance T = I/I0
% Transmittance = T×100
Absorbance A = Log10 I0/I=
Log10 1/T
If the entire light passes through a solution without any absorption, then
absorbance is zero. In this case, the percent transmittance is 100%.
If all the light is absorbed, then absorption is infinite and the percent transmittance is zero %.
a) Conjugation
Absorption shift towards longer wavelength, if double bonds (chromophore)present in the
molecule are in conjugation. For example,
In compound ‘A’, double bonds are in conjugation therefore ‘A’ possessing higher
wavelength (𝜆max) as compare to compound ‘B’ (non-conjugated derivative).
We know that,
ℎ𝑐
E=
𝜆
As the conjugation increase transition energy (E) between the orbitals is decrease and therefore
wavelength (𝜆max) increase.
b) Effect of solvent:
In polar solvent, 𝜋 − 𝜋* transitions shift towards longer wavelength (Red shift), because
dipole interactions with polar solvent molecules lower the energy of excited state (𝜋*) than
that of the ground state (𝜋* orbital’s are stabilized by hydrogen bonding with polar solvent).
Whereas in polar solvent, 𝑛 − 𝜋* transitions shift towards lower wavelength (Blue shift),
because dipole interactions with polar solvent molecules lower the energy of ground state
(𝑛) than that of the excited state (𝑛 orbital’s are stabilized by hydrogen bonding with polar
solvent).
𝜆max (nm)
Base value:
214
Acyclic or heteroannular
dienesHomoannular dienes 253
Increments for:
Double bond extending conjugation 30
R alkyl substituent or ring residue 5
Exocyclic double bond 5
Polar groupings:
-OCOCH3 0
-OR 6
-Cl, -Br 5
-NR2 60
𝜆max (nm)
Base value:
215
Acyclic or 6-membered cyclic ketone
5-membered cyclic ketone 202
Aldehyde 210
39
Increments for: 30
Homocyclic diene component
𝛼 = 10, 𝛽 = 12, 𝛾 & ℎ𝑖𝑔ℎ𝑒𝑟 = 18
Double bond extending
conjugationR alkyl substituent or 5
ring residue Exocyclic double bond
Polar groupings:
𝛼 = 35, 𝛽 = 30, 𝛾 = 30
-OH
𝛼 = 35, 𝛽 = 30, 𝛾 = 17
-OR
𝛼 = 15, 𝛽 = 12, 𝛾 = 12
-Cl,
𝛼 = 25, 𝛽 = 30, 𝛾 = 25
-Br
𝛽 = 95
-NR2 𝛼 = 6, 𝛽 = 6, 𝛾 = 6
-OCOCH3
Application of UV spectroscopy
i) Extent of conjugation: As the double bond increase, absorption shift towards longer
wavelength.
ii) Distinction between conjugated and non conjugated compounds:
Both the above compound A & B are isomer of each other. Due to 𝑛 − 𝜋*
transition, compound A appear at longer wavelength than compound B.
iii) Study of geometric isomerism:
In isomer A, due to steric hindrance, absorption shift towards lower wavelength. We know
that, steric hindrance destabilize the compound means energy of the molecule increase
which decreases the wavelength.
iv) Used in the detection of impurities: Due to presence of impurities in the compound, give
additional peaks are observed in UV spectrum.
Fluorimetry
Principle
Collectively, fluorescence and phosphorescence are called photoluminescence methods. The
photoluminescence methods are the ones which result from absorption of photons. The absorption
of photon results in the excitation of molecule which results in luminescence (as when the excited
molecules or species revert back to the ground state, they give off light) and this type of
luminescence is therefore referred to as “photoluminescence’.
Before learning the principle of photoluminescence phenomena, let us first learn and understand
the terminology that we will use for excited states that lead to fluorescence and phosphorescence.
Singlet and Triplet States: When we talk about molecular systems, we refer to movement of
electrons on absorption of photons (A photon is a single quantum of electromagnetic energy). And
the electrons in molecular orbitals are paired, according to Pauli’s exclusion principle (no two
electrons in the same quantum state can have all four quantum numbers similar; they differ in their
spin – as you all know paired electrons in a molecular orbital have opposite spins). The electrons
are initially in their ground state (which is the most stable energy state where the electrons ar
paired). When an electron absorbs energy (i.e., when photons strike), it gets excited to a higher
energy state keeping its spin orientation intact. These excitations are not stable and the excited
electrons have a tendency to revert back to the stable ground state. And this reverse route from
excited state to ground state gives rise to the phenomena fluorescence and phosphorescence.
Let us now look into the electronic picture of this process:
Ground electronic state: It is the one where the electrons are paired with opposite spins.
The molecular electronic state in which the electrons are paired is referred to as Singlet State
(𝑀𝑢𝑙𝑡𝑖𝑝𝑙𝑖𝑐𝑖𝑡𝑦 = 2𝑆 + 1 = 1; 𝑑𝑖𝑎𝑚𝑎𝑔𝑛𝑒𝑡𝑖𝑐). So, the ground state is always spin paired and is a
singlet state.
Excited electronic states: (a) If the spins remain paired in the excited state, the molecule is in an
excited singlet state (𝑀𝑢𝑙𝑡𝑖𝑝𝑙𝑖𝑐𝑖𝑡𝑦 = 2𝑆 + 1 = 1; 𝑑𝑖𝑎𝑚𝑎𝑔𝑛𝑒𝑡𝑖𝑐). (b) If the spins become
unpaired, the molecule is in an excited triplet state (𝑀𝑢𝑙𝑡𝑖𝑝𝑙𝑖𝑐𝑖𝑡𝑦 = 2𝑆 + 1 = 3;
𝑝𝑎𝑟𝑎𝑚𝑎𝑔𝑛𝑒𝑡𝑖𝑐).
After learning the singlet and triplet terminology, let us now look into the energy level diagram for
photoluminescence molecules and understand the processes that take place on absorption of
photons. This diagram is referred to as Jablonski Diagram.
Figure 1: Jablonski diagram representing absorption, fluorescence and phosphorescence
Jablonski Diagram is named after physicist Aleksander Jablonski. It is a diagram used in molecular
spectroscopy for illustrating the electronic states in a molecule and the transitions that occur
between them. The electronic states are arranged vertically by energy and grouped horizontally by
spin multiplicity.
When an electron is transferred from a singlet energy level into a triplet energy level, by
a processcalled inter-system crossing, it is accompanied by a flip spin.
Also, the probability of a singlet to triplet transition is much lower han a singlet to singlet
transition.Therefore, the intensity of the emission from a triplet state to singlet state is
much lower than the emission intensities from a singlet state to a singlet state.
Absorption of UV-Vis radiation is necessary for exciting the molecules from the ground state
to one of the excited states. At room temperature, essentially all electrons in a molecule
occupy the ground state energy level (S0). This absorption of light populates number of
vibrational energy levels of excited electronic states (S1, S2, ……..). After an electron has
been excited to higher energy levels, the energy is eventually dissipated to the environment
and the electron reverts to the ground state. This energy dissipation can take place in a number
of ways and is responsible for fluorescence and phosphorescence. The dissipation of absorbed
energy can occur by a number of electronic process which can be categorized as radiation-less
transitions and radiative transitions.
Radiation-less transitions (Heat) Radiative transitions (Photoluminescence)
a. Vibrational relaxation a. Fluorescence
b. Internal Conversion b. Phosphorescence
c. Inter-system crossing c. Delayed fluorscence
d. Energy transfer during molecular
collisions (External Conversion)
Both fluorescence and phosphorescence processes are basically nothing but relaxation of an
excited state via light emission. Let us learn now more about these processes.
The processes that take place on absorption of photons are explained below in the table which also
explains the Jablonski diagram.
So now with this understanding of Jablonski diagram, we can talk about fluorescence and
phosphorescence.
Fluorescence: This photoluminescence phenomenon is observed when an electron relaxes from
its first singlet electronic excited state to its singlet electronic ground state. The return to ground
state produces a photon emission of longer wavelength. Fluorescence is observed in simple as
wellas in complex gaseous, liquid, and solid chemical systems. It is of two types:
Resonance fluorescence is the one where the absorbed radiation is remitted without a change in
frequency = excitation
Molecular fluorescence is the one where the bands are found centered at wavelengths that arelonger than
the resonating wavelengths. This shift toward longer wavelengths, or lower energies,is termed the Stoke’s
shif
Phosphorescence: This photoluminescence phenomenon is observed when an electron relaxes from its
first triplet electronic excited state to its singlet electronic ground state. It occurs via conversion of an
excited singlet state to an excited triplet state through the process of intersystem crossing (facilitated by
presence of non-bonding electrons as well as heavy atoms). The return to ground state produces a
photon emission of longer wavelength in comparison with fluorescence. Phosphorescence is not
common in solutions at room temperature but it can be easily observed at liquid nitrogen temperature or
in solid state. This kind of emission is ordinarily observed only at low temperatures, in highly viscous
media or by molecules that are adsorbed on solid.
Delayed fluorescence: An electron in the excited triplet state can cross back to the singlet excited
state and can result in a photon as fluorescence but at a much longer time than prompt fluorescence.
This process is referred to as delayed fluorescence and has similar characteristics as prompt
fluorescence except for longer lifetime. Actually, the corresponding lifetime is intermediate
between fluorescence and phosphorescence.
Now, before taking up the instrumentation for fluorimeter and phosphorimeter, let us learn about
luminescence spectra.
Luminescence spectra
The data obtained from a luminescence spectrophotometer is represented in the form of excitation or
emission scan. The excitation scan is a spectral profile of excitation wavelengths which are produced
at a fixed emission wavelength whereas the emission scan is a spectral profile of emission
wavelengths which are produced by a fixed excitation (i.e. absorbance) wavelength.
The transition from the lowest vibrational level in the electronic ground state to the lowest vibrational
level in the first excited electronic state, called the 0 - 0 transition, is common to both the excitation
and emission process. Thus, the emission spectrum would be expected to overlap the excitation
spectrum at the wavelength corresponding to the 0 - 0 transition and the rest of the emission spectrum
to be of lower energy and hence a longer wavelength. In practice the 0 - 0 transition for the
excitation and emission spectra of a molecule rarely coincide exactly. This difference is
representative of the small loss of energy through the interaction of the absorbing molecules with the
surrounding solvent molecules
Figure 3: 0 - 0 transition overlap in the excitation and emission process
Let us now briefly look into the factors that affect fluorescence and phosphorescence phenomena.
Both molecular structure and chemical environment influence whether a substance will or will not
luminesce; these factors also determine the intensity of emission when luminescence does occur.
o Solvent- Modification in polarity of the solvent will have substantial effect on the
fluorescent behavior of the sample. Apart from solvent polarity, the viscosity of the solvent
also effects the fluorescence and phosphorescence. Increase in viscosity will increase the
fluorescence because chances of deactivation is less.
o Temperature- As the temperature changes the viscosity of the medium also changes
which causes change in collisions of sample molecules present in solvent, which results in
escalation in chances of deactivation due to vibrational relaxation and internal conversion.
Therefore, increase in temperature will result in decrease in fluorescence and vice-versa.
o Dissolved oxygen- It is a paramagnetic substance which reduces fluorescence and will
cause intrusion in fluorimetry analysis. Dissolved oxygen stimulates intersystem crossing.
Dissolvedoxygen also influences phosphorescence.
o pH- Any change in pH effects the intensity of fluorescence and spectral features of
fluorescence. Presence of basic or acidic functional groups in molecules effects the pH of
the medium which changes the degree of ionization of functional groups. This will result in
changes in molecules in terms of conjugation and aromaticity that affects fluorescence.
Apart from these factors adsorption, intensity, oxidation also affects fluorescence and
phosphorescence.
Spectro-fluorometer
Fluorescence is measured by Spectro-fluorometer and Fluorometer. Following are the
basiccomponents of Spectro- fluorometer and Fluorometer-
Excitation source
Excitation Monochromator
Cuvette
Emission Monochromator
Detector
Excitation source: 300-700 nm is the range of interest for most of the fluorescent compounds.
The excitation sources used in Spectro- fluorometer and fluorometer include xenon lamps,
lasers, mercury arc lamps and quartz halogen lamps. Xenon lamps are one of the known
excitation source and it provides continuum high intensity radiant energy in 250-800 nm
spectral region. Because of high energy output of xenon lamp, stability of lamp flashes and
higher Ultra-violet and visible spectral productivity, it is widely used in fluorometer. Lasers
are also used as an excitation source because of its high intensity and is well focused.
Excitation and Emission Monochromator: In fluorometers and spectro-fluorometers, the
monochromator consist of filters (interference and colored glass filter), prisms and gratings.
Colored glass filters selectively absorbs particular wavelength, this type of filter is generally
used for both excitation and emission selection of wavelength. But the only limitation is that
colored glass filters are vulnerable for transmitting stray light and undesirable fluorescence.
Grating monochromators are used for isolation of selective regions of UV-Visible spectrum.
The spectral resolution of the light passing from the slit is a function of width of the slit and
grating resolution. To obtain higher excitation intensity the spectro-fluorometers generally
uses large slit width. Grating monochromators are of great use because it provides selective
emission and excitation wavelengths. The grating rotations are digitally controlled. For
elimination of extra order of emission, laser is used as both monochromator and excitation
light source.
Cuvette: Cuvettes are used to hold the sample to be examined. The shape of cuvettes used in
fluorescence instruments are generally of rectangular and square shape and the material used
for constructing these cuvettes allows the excitation and emission light to pass through it. Glass
and plastic materials are used for visible light and for Ultra Violet light, quartz is used. Glass
and plastic is not used for UV light because instead of passing the UV light it absorbs the UV
light. The position of the cuvette and the excitation beam is important for establishing the
optical geometry for the fluorometers. Right angle detector approach is used by the majority
of modern fluorometers and spectro- fluorometers because of its property of minimizing
background signal used for limiting analytical sensitivity. To accommodate various types of
geometries, the sample cell is placed at different angles according to the excitation source and
detector.
Photodetector: Detectors used in spectro- fluorometers and fluorometers are same as detectors
used in spectrophotometers, for instance- photomultiplier tube (PMT) and charged couple
detectors (CCD). Visual observation is also used.
At high light intensities, analog techniques are used for measuring PMT current, then this
analog signal is converted into digital signal for computer use and displaying the result. At low
light level, at cathode of PMT spikes are counted. The number of pulses generated per unit
time is directl
roportional to intensity of fluorescent light emitted by the sample which are striking the PMT.
This techniques is called as photon counting.
Charged couple detectors (CCD): These are multichannel devices which have vast range and a
signal to noise ratio, which is higher in comparison with photomultiplier tube. These are solid
state devices which are composed of photon detecting shift registers and these registers reads
horizontally and vertically. They are used for fluorescence applications because they can
detect very low intensity of light and can measure low concentration of fluorescent molecules.
A 30W mercury lamp is used when fluorometer is used with charged couple detectors.