Classification Excerpt
Classification Excerpt
Classification
Chapter 1
Learning outcomes
By the end of this chapter you should understand:
The characteristics of living organisms The characteristics of some invertebrates
How to use the binomial system for naming Viruses, prokaryotes (bacteria), protoctists and
organisms fungi
How living organisms are classified The construction and use of a dichotomous
key
The characteristics of some vertebrates
• Nutrition. In order to provide the raw materials The binomial system of classification
and the energy for all the other characteristics of
life listed previously, organisms must take in energy- ‘bi’ = two and ‘nomial’ from the Latin nomen = name
containing materials that are required for growth
and development. All living organisms are usually known by the binomial
system, an internationally agreed system using two
Nutrition is thus defined as the taking in of names.
materials for energy, growth and development.
These two names indicate the genus and the species to
Plants require light, carbon dioxide, water and ions; which the organism belongs.
animals need organic compounds and ions and
usually need water. The genus is always written with an upper-case first
letter and the species is written with all lower-case
letters. Both names are always underlined when hand-
The first letters of each of the written and appear in italics in print. Both names often
TIP
characteristics together spell the name have a Latin or Greek origin. Thus, the lion is
of ‘MRS GREN’ – a lady well known
to students trying to remember the Panthera leo (hand-written) and
characteristics of living organisms! Panthera leo (in print).
The binomial system is useful because:
1.02 The concept and use of a • Sometimes, different species in different parts of
the world share the same name. When different
system of classification countries work together on schemes to conserve
endangered species, it is vital that they are all
The living universe comprises well over 10 million considering the same organisms (e.g. there are three
different types of organism, which are sorted into different species of arthropod all called ‘Daddy Long-
groups based on common features. This is called legs’ in different parts of the world.)
classification (or taxonomy). Those organisms that
share many similar features are placed in the same • The same species may have different names in
group. Those that share few features are placed in different languages.
separate groups. The number of shared features • The common name may be misleading (a jellyfish is
between different groups gives an indication of how not a fish).
closely related the groups may be.
• All organisms placed in the same genus will share a
The largest groups are called kingdoms, of which there set of features common only to that group. Knowing
are five: the genus, even without actually seeing the organism,
• Prokaryote (Bacteria) therefore tells the biologist a great deal about
organisms and about their evolutionary history and
• Protoctist relationships (i.e. how recently they separated from
• Fungus one another as they have evolved).
For many years, the classification of organisms was 1.03 Features of organisms
Chapter 1 Classification
based on studies of their morphology, that is, their
outward appearance, for example, the number and All living organisms share the possession of a cellular
type of limbs, or the shape of the flowers produced by structure, that is, they are all made up of one or more
a plant. It may include internal morphological features, living units called cells.
such as the skeleton (useful when classifying fossils,
for example). These studies were also supported by Cells include the following features:
consideration of shared anatomical features, that is, • Cytoplasm – a jelly-like substance that contains
internal features visible as a result of dissection of smaller structures (organelles) and in which all the
organisms. metabolic chemical reactions occur.
• DNA – the chemical that forms the genes of the cell
RNA and DNA sequencing that are responsible for the nature of the proteins
made within the cell and also for handing on this
The sequence of chemical bases in the DNA and information to future generations.
RNA molecules found in different organisms gives a • Cell membrane – the living, selectively permeable
very accurate indication of how closely related those structure that encloses the cell contents and is
organisms are. Mutations are constantly changing this responsible for the entry of substances into and exit
sequence and those changes are handed on to the next of substances from the cell.
generation. (See Chapter 18.)
Two of the most familiar kingdoms in the living universe
The sequence of bases in the DNA molecule are the animals and the plants. The distinguishing
determines the sequence of amino acids in the features of these two kingdoms are as follows:
proteins made by the organism. Thus, a mutation in
an organism’s DNA leads to a change in its protein
structure. The longer ago the two different organisms Animals
separated from a common ancestor, the larger the
number of mutations will have occurred, and the • Animals take in (ingest) and use organic materials
greater the differences in the sequence of bases there from other living organisms as their source of energy
will be in these organisms’ DNA and RNA. This, in turn, for growth and development.
leads to a greater difference in the amino acid sequence • Animals are able to move from one place to another
in their proteins. (movement known as locomotion). (Sponges are
Data from the analysis of DNA/RNA base sequences exceptions to this as they are animals that remain
is now so accurate that we are able to identify human fixed to the surface on which they live.)
beings in the same family. • Sexual reproduction – animals reproduce using
specialized reproductive cells (gametes). The male
gamete is the sperm and the female gamete the egg
Progress check 1.1 cell (or ovum). Few animals reproduce by asexual
reproduction.
1 Find out what you can about a DNA
molecule. How many bases are there? • Most animals have diploid nuclei. That is to say that
each nucleus has two full sets of genetic material
2 Make sure you know what each of the contained in matching chromosomes. Only the X
letters in ‘Mrs Gren’ stand for. and Y chromosomes (the sex chromosomes) do not
3 What describes respiration? exactly match.
A breathing in oxygen • There is no rigid cell wall surrounding the cell
membrane.
B breathing out carbon dioxide
C releasing energy from nutrient molecules
D using energy to construct nutrient
molecules
Plants Fish
Chapter 1 Classification
• Plants manufacture their own food from carbon All fish share the following characteristics (Figure 1.1):
dioxide and water, using energy from sunlight that is
• A skeleton made of bone or of the more pliable
trapped by the green pigment called chlorophyll. The
material, cartilage
process is called photosynthesis.
• A skin covered with scales
• Plant cells are surrounded by a rigid cell wall made
of cellulose. Pressure within the cell caused by the • Fins that present a large surface area to push against
entry of water keeps the cell firm and supplies the water when swimming
rigidity to the plant. • Gills for extracting oxygen from water and supplying
• Plants have a complex reproductive cycle, involving it to the blood.
various agents to bring about the processes of
body streamlined and
pollination and, later, fruit or seed dispersal. fins covered with scales
• Most plants have only a few, but easily identifiable
organs – leaves, flowers, stems and roots.
• Asexual reproduction, where a parent plant gives rise
to may offspring without the involvement of gametes,
is relatively common in plants.
• Although most plants in their familiar form have
diploid nuclei, very few have the non-matching XY
sex chromosomes.
NB Both plants and animals are made up of many cells
powerful tail gills under
(they are thus both described as being multicellular). for swimming gill cover
Chapter 1 Classification
• Have scales on their legs and toes
• Lungs for breathing
• Lay hard-shelled eggs on land
• Maintain body at a constant temperature – usually
above atmospheric temperature.
TIP
blooded’ with care. They are not very
helpful terms, since some reptiles when
basking in the sun may have a blood
temperature higher than that of birds.
one pair each of front and rear limbs
scales on legs
Test yourself by writing at least two characteristic • The crustaceans (crabs and lobsters)
features of each of the five vertebrate classes. • The arachnids (spiders)
• The myriapods (centipedes and millipedes).
Worked example All arthropods have the following features:
a A student is told that an animal he is about • They have segmented bodies.
to be shown is either an amphibian, a • They have limbs with clearly visible joints.
reptile or a mammal. Describe the features
common these three groups. • They have an exoskeleton (i.e. a skeleton on the
outside of the body). (Muscles are attached internally
b Describe the external features that would to the exoskeleton – the opposite of ourselves, where
indicate to which group it belongs. muscles are attached externally to our endoskeleton.)
Answer • The exoskeleton is composed of the chemical chitin.
a Since these are all vertebrates, then the (See fungi.)
question is asking for vertebrate features
shared by the three groups. All vertebrates The insects
have a vertebral column (avoid calling it a
‘backbone’) and a bony skeleton. They will In addition to the characteristics of arthropods
possess eyes, a mouth, two front legs (‘arms’) listed, insects have the following features
and two rear legs. They will all have the (Figure 1.6):
following internal organs: lungs, heart, blood
vessels, liver, kidneys and an alimentary canal. • The body is divided into three parts – head, thorax
and abdomen. The head, thorax and abdomen are
b If it is an amphibian, it will have a soft, smooth not segments.
and most probably moist skin. If it is a reptile,
its skin will be tough, dry and will be covered • They have three pairs of (jointed) legs – attached to
with scales. If it is a mammal, it will have a the thorax.
skin covered, or partly-covered, with hair. It is • They usually have wings – one or two pairs attached
likely to be warm to the touch. If it is a female, to the thorax.
then it will have at least one pair of mammary
• They have one pair of antennae – attached to the head.
glands on the front of its thorax (chest).
• They have compound eyes – each one with
(Note that part (b) asks about external features.
hundreds of small units called ocelli.
Mention of internal or external fertilization, laying of
unprotected eggs in water that hatch into tadpoles • Breathing is through small holes (spiracles),
(amphibian) or of shelled eggs on land (reptiles) are occurring in pairs, one each side of the abdominal
facts that are not relevant to the question. segments and two on the thoracic segments. The
spiracles lead into branched tubes called tracheae.
Chapter 1 Classification
thorax wings
This group includes the spiders and the scorpions and,
as well as those features possessed by arthropods, the
arachnids also have the following (Figure 1.8):
• A body divided into two parts (the head and thorax,
called the cephalothorax, and the abdomen).
• Four pairs of jointed legs joined to the cephalothorax.
head
segments of • No antennae.
first leg of spiracles
3 pairs abdomen
for breathing
The crustaceans
These live mostly in water (e.g. a lobster) and those that
live on land (e.g. some crabs) live in damp places.
As well as the characteristic of arthropods, crustaceans
have other features: (Figure 1.7):
• There are two pairs of antennae that are attached
to the head.
• There are three pairs of mouthparts that, with the
antennae, make up the five pairs of appendages
attached to the head.
• The exoskeleton is often strengthened with calcium Figure 1.8 A spider
salts. (This protects the animal from predators,
but can make the animal very heavy. The additional The myriapods
mass is supported by the water in which most
crustaceans live.) Myriapod means ‘countless legs’ and includes the
centipedes and millipedes. As well as possessing the
• The head and thorax are often joined to form the features common to arthropods, they also possess
cephalothorax. (Figure 1.9):
• The abdomen often has a pair of limbs on each • One pair of antennae.
segment, which are modified for many purposes, but
often for swimming. • One or two pairs of legs attached to every segment.
One pair of legs
second pair
One pair of antennae per segment
of antennae
hard
exoskeleton
first pair of
antennae
(each one divides)
other limbs
underneath
abdomen
head and thorax
(cephalothorax) Figure 1.9 A centipede
As well as cytoplasm, DNA and a cell membrane, 4 They can reproduce only inside living (host) cells.
the cells of all truly living organisms also contain 5 Since they are parasites, they cause disease
within their cytoplasm structures (‘organelles’) called (i.e. they are pathogenic). Examples of diseases
ribosomes. caused by viruses are influenza, measles and AIDS.
Ribosomes are: 6 Viruses are not affected by antibiotics.
• about 20 nm in diameter (1 nm = 1 millionth of a DNA or RNA
millimetre)
• the place where amino acids are joined together to
make proteins.
• made of protein and the nucleic acid RNA.
Some of the proteins made will be enzymes and
amongst the enzymes will be those used in the
process of anaerobic respiration. This occurs in the protein
cytoplasm of all cells with the release of a relatively coat
small amount of energy. If oxygen is available
within the cell, then the end-products of anaerobic Figure 1.10 A virus
respiration will be further broken down (oxidised
during aerobic respiration) to release greater Their extremely small size allows them to be easily
amounts of energy. transmitted from host to host in very considerable
numbers, both by air currents as well as by contact.The
protein coat gives the nucleic acid considerable protection.
The main features used in classifying Once inside a living host cell, they take over the host cell’s
metabolism and use it for their own reproduction. Some
viruses, prokaryotes (bacteria), viruses (e.g. influenza virus) have a high mutation rate;
protoctists and fungi thus a person may recover from flu, but still fall victim to
the next epidemic caused by a mutated strain of the virus
Since a microscope is required to study viruses and to which they have no immunity.
prokaryotes, protoctists and also for some fungi – such
as yeast – they are referred to as microorganisms.
Chapter 1 Classification
Prokaryotes are truly living organisms, with the following These are a group of largely microscopic, truly living
characteristics (Figure 1.11): organisms.
1 They have a size in the range of 0.5–5 µm 1 They are mostly unicellular but some are multicellular.
(1 µm = 1/1000 mm).
2 They are either free-living or parasitic.
2 They are unicellular (made of one cell only).
3 They have aerobic respiration involving mitochondria.
3 They have no true nucleus (their DNA lies ‘loose’
4 Unlike the prokaryotes, structures that lie in their
in the cytoplasm).
cytoplasm are surrounded by membranes.
NB Some prokaryotes contain a loop of DNA
5 They have true nuclei (i.e. they are eukaryotes).
called a plasmid – a feature sometimes employed in
biotechnology. 6 They reproduce both sexually and asexually.
4 They have a cell wall. 7 They are grouped into three categories: animal-
like (protozoa) that have animal-like nutrition;
5 They may be (pathogenic) parasites or they
plant-like (algae) that feed by photosynthesis and
may be saprotrophs. Some may be involved in
fungus-like.
nitrogen fixation and denitrification. (See the
Nitrogen Cycle.)
Pathogenic = disease-causing; Saprotrophic = feeding
Fungi
on dead organic matter causing it to decay. Fungi are usually much larger organisms, mostly visible
6 They are killed by antibiotics. to the naked eye. For example: yeasts, moulds and
mushrooms. They have the following characteristics
slime layer (Figure 1.12):
(sometimes present)
• They have no chlorophyll. (They release enzymes
to digest large molecules externally, then absorb
cell wall the soluble products.) They are thus parasites or
saprotrophs.
• They have a ‘cell’ wall made of chitin.
• They are usually made of a large number of tubular
threads (hyphae) intertwined to form a mycelium.
DNA
(no nucleus) • Hyphae are not divided into individual cells. The lining
of cytoplasm has many nuclei and the central space
Figure 1.11 A bacterium in the hyphae is a vacuole full of (vacuolar) sap.
• If they store carbohydrate, they store glycogen.
They can form resistant spores that are easily carried
by air currents and by contact. Once within a suitable • They reproduce by producing spores.
substrate, they reproduce quickly – dividing every half
an hour. spores
The branching mycelium of a fungus ensures that the the monocotyledons and the dicotyledons (usually
Chapter 1 Classification
spore cases on
frond
under surface
of leaflet
Figure 1.13 A fern plant Figure 1.14 A monocotyledon (Iris) with thin strap-like
leaves that have parallel veins
By far the largest division of the plant kingdom is the
flowering plants that are sub-divided into two classes:
10
The (eu)dicotyledons
Chapter 1 Classification
2 An organism possesses xylem but never
This class includes cabbage, hibiscus, geranium and sweet produces flowers. Which of the following
potato, all of which have features that differ from those will it be?
of the monocotyledons mentioned earlier (Figure 1.15). A a dicotyledon
• Two cotyledons are present inside each seed. Not B a fern
only do these become the first photosynthesizing
leaves when the seedling emerges above ground, but C a fungus
generally store food used during the process of seed D a monocotyledon
germination.
3 An organism has three petals. Which of the
• The leaves are broad. following will it be?
• The leaves have branched veins usually radiating A a dicotyledon
from a central thicker vein called the midrib with the
B a fern
branches linked by a network of veins.
C a fungus
• Fewer, thicker roots which are often joined to one
long central root called the tap root. D a monocotyledon
• Flowers have parts usually arranged in fours or fives.
11
only one cell)? Yes go to 2 large number of possibilities, the most effective
No go to 3 dichotomous key asks questions that each time divides
the remaining possibilities into roughly equal halves. In
2 Does it have a nucleus? Yes protoctist
this way, half the possible organisms are discarded at
No bacterium
each step.
3 Does it have hyphae? Yes fungus
No go to 4
4 Does it have cell walls? Yes plant
No animal
E F
Figure 1.16
Chapter summary
You now know the characteristics of living You are now able to write down the names and
organisms. characteristics of the four phyla of invertebrates
You have learnt how to use the binomial system and the four classes of arthropods that are
of naming organisms. described.
You are able to list the five classes of vertebrate You have learnt the differences between the
and know how to distinguish between them. two classes of flowering plant.
You have learnt the differences between the You have learnt how to use and also to
microorganisms viruses and bacteria and how construct a dichotomous key for identifying
they differ from fungi. organisms.
12
Exam-style questions
Chapter 1 Classification
1 Figure 1.17 shows six arthropods. Use the key to identify each of the arthropods. Copy
Table 1.1 and write the name of each arthropod in
A B C
the correct box. As you work through the key, put
a tick (✓) in the boxes to show how you identified
each arthropod.
As an example, the appropriate boxes for arthropod
A have been ticked for you.
Figure 1.17
Key
Arthropod
1 a segments on abdomen clearly visible ………………………………………… go to 3
b segments on abdomen not clearly visible …………………………………… go to 2
2 a 3 pairs of legs ……………………………………………………………… Pediculus
b 4 pairs of legs ……………………………………………………………… Ornithodorus
3 a wings present ………………………………………………………………. go to 4
b wings absent ……………………………………………………………… Pulex
4 a wings clearly longer than abdomen ………………………………………. Musca
b wings not clearly longer than abdomen ……………………………………… go to 5
5 a antennae curved …………………………………………………………… Periplaneta
b antennae straight …………………………………………………………… Anopheles
1a 1b 2a 2b 3a 3b 4a 4b 5a 5b name of arthropod
A ✓ ✓ Pediculus
F
[10]
Table 1.1
13
2 Figure 1.18 shows a centipede. compared with most other arthropods, its outer
body covering is thin and permeable.
One pair of legs
One pair of antennae per segment a Name two other groups of arthropod.
For each group, state one feature found only
in arthropods of that group. [4]
b Suggest and explain two reasons why
centipedes are often found under stones,
decaying wood and leaves. [4]
3 a Explain the fact that viruses are almost
Figure 1.18 always harmful to other organisms. [6]
The centipede is a myriapod, one of the four groups b Describe how viruses differ structurally from
of arthropod. It is a carnivore that lives on land and, bacteria. [5]
14