Molecular Theory Module 1-6
Molecular Theory Module 1-6
Immunology
The immune system accomplishes this by a series of interactions that result in:
● natural resistance
● recovery
● acquired resistance to infectious diseases
● allergies
● rejection of a transplanted organ
● an autoimmune disorder
Humoral-mediated Immunity
Passive Immunity
Innate Immunity
● Mechanisms of the innate immunity (phagocytes) and the alternative complement pathways are
activated immediately after infection and quickly begin to control multiplication of infecting
microorganisms
○ Innate immune recognition is mediated by germline encoded receptors, which means that
the specificity is genetically predetermined
● The innate immune response may not be able to recognize every possible antigen, but may focus
on a few large groups of microorganisms, called pathogen-associated molecular patterns
(PAMPs)
○ PAMPS are molecules associated with groups of pathogens that are recognized by cells
of the innate immune system
● The receptors of the innate immune system that recognize these PAMPs are called pattern
recognition receptors (PRR's, eg. toll-like receptors)
● There are three types of PRRs
○ Secreted PRRs - molecules that circulate in blood and lymph, if bound to PAMP it
triggers the complement cascade
○ Phagocytosis receptors - cell surface receptors that bind the pathogen initiating the
release of cytokines
○ Toll like receptors - set of transmembrane receptors that recognize different types of
PAMPS, they are found on macrophages, dendritic cells and epithelial cells
■ TLR-1 binds to gram positive bacteria
■ TLR-2 binds to gram negative bacteria
Adaptive Immunity
● By comparison, the adaptive immune system is organized around two class of cells, T & B
lymphocytes
● When the lymphocyte encounters an antigen that binds to its unique antigen receptor site,
activation and proliferation of the lymphocyte occurs
○ This is called clonal selection and is responsible for the basic properties of the adaptive
immune system
● Random generation of highly diverse database of antigen receptors allows the adaptive immune
system to recognize virtually any antigen
○ This however can be a problem when the body cannot distinguish self from non-self
Definitions
● Antigen
○ Substance that stimulates antibody formation
○ Ability to bind to an antibody
○ Can bind to an antibody or T cell receptor but may not be able to evoke an immune
response initially
● Immunogens
○ Macromolecules capable of triggering an adaptive immune response
○ Induces formation of antibodies or sensitized T cells
○ Can specifically react with corresponding antibodies or sensitized T cells
○ All immunogens are antigens but not all antigens are immunogens
● Hapten
○ A low molecular weight particle
○ Can bind to antibody but must be attached to a carrier to stimulate an immune response
Antigen: Characteristics
Adjuvant
● Each Ig molecule is bifunctional, one region of the molecule involves binding to an antigen, and a
different region mediates binding of the Ig to host tissues including complement (C1q)
● The core of the antibody consists of the sequence of amino acid residues linked by peptide bond
● 12 domains arranged in two heavy (H) & two light (L) chains
○ 2 types of antigenically different L chains: kappa, lambda
● Chains linked through cysteine residues by disulfide bonds (-s-s-)
● Remainder of chain composed of constant amino acid sequences = constant (c)
● Fab region
○ Antigen-binding portion, hypervariable loops - complementary determining regions
(CDRs)
○ N-terminal
○ Heterogeneity = variable (v)
● Fc region
○ Interacts with other phagocytic cells and complement
● Hinge region
○ flexibility
IgG
IgM
● 10% of total Ig, mostly in intravascular pool because of its large size
● Produced early in immune response
● Effective in agglutination and cytolytic reactions
● Has five individual heavy chains
● 4 months of age, 50% of the adult level is present; adult levels are reached by 8 to 15 years
● Some IgM in cord blood; not detectable cerebrospinal fluid
● Decreased : primary (genetically determined) Ig disorders, secondary Ig deficiencies
● Increased: Infectious diseases, collagen disorders, hematologic disorders, monoclonal
gammopathies
IgA
IgD
IgE
● Production of antibodies is induced when the hosts lymphocytes come into contact with a foreign
antigenic substance that binds to its receptor
● This triggers activation and proliferation (AKA clonal selection)
● Clonal expansion of lymphocytes in response to infection is necessary for an effective immune
response
● Whether a cell mediated or antibody response takes place depends on how the antigen is
presented to the lymphocytes, many immune rxn’s display both types of reponses
● The antigenicity of a foreign substance is also related to route of entry; intravenous and
intraperitoneal routes are stronger stimuli than subcutaneous or intramuscular
● Anamnestic response: Subsequent exposure to the same antigen produces a memory response
● Antibody response:
● antigen encountered
○ cells of the immune system recognize the antigen as nonself
○ elicit an immune response or become tolerant of it
● Immune response:
○ cell-mediated immunity: T cells and macrophages
○ production of antibodies by B lymphocytes and plasma cells
Antibody Specificity
Heterophile Antibodies
● Cross reactivity: When some of the determinants of an antigen are shared by similar antigenic
determinants on the surface of apparently unrelated molecules, a proportion of the antibodies
directed against one type of antigen will also react with the other type of antigen
● Cross-reactivity occurs between bacteria that possess the same cell wall polysaccharides as
human red blood cells
● (e.g. blood group A-like and B-like antigens)
● Antigen + Antibody:
○ Multiple, reversible, intermolecular attractions
○ Bonds weak and across short distances
● 4 Types of bonding:
○ Hydrophobic Bonds: major bonds; exclude water molecules to strengthen bond
○ Hydrogen Bonds: hydrogen bridges
○ Van der Waals Forces: electron clouds and hydrophobic bonds
○ Electrostatic Forces: Goodness of Fit, zeta potential
● Zeta Potential: Electrostatic potential
○ net charge between cell membrane and the surface of shear
○ larger antibodies (e.g. IgM) bridge the zeta potential
○ large cells like red blood cells able to bind and agglutinate
Module 3 & 4
Neutrophils
● Neutrophils: Polymorphonuclear leukocytes (PMN's) meaning they have various shapes and sizes
of the cell's nucleus
● Lifespan of 5.4 days
● Provide host defense against bacterial and fungal infections
○ This is essential in the innate immune response
● Main leukocyte associated with phagocytosis and localized inflammatory response
● We know that they are part of the initial immune response because neutrophils are found in
inflammatory exudate (pus formation)
● Can also prolong inflammation by releasing soluble substances such as cytokines and chemokines
○ Cytokines are small proteins that signal the immune system to “keep going”
● Influence adaptive immune response:
○ Shuttling pathogens
○ Antigen presentation
○ Modulation of T helper types responses
● Move to peripheral tissues by diapedesis
○ Diapedesis: movement through blood vessel wall
○ Move from the blood circulation, through blood vessel wall to site of injury where they
perform phagocytosis
○ Phagocytosis in peripheral tissue
● Granzymes:
○ Granules containing antibacterial substances
○ Can also be destructive to host if they release these particles after digestion
● Phagocyte releases oxygen radicals and granule contents into surrounding tissues; cause tissue
damage
○ e.g. Dust inhalation and smoking
● Autoimmune diseases: Inappropriate activation of phagocytosis (body attacks own cells/tissues)
○ Rheumatoid arthritis, multiple sclerosis
● Abnormal Neutrophil function may lead to:
○ Recurrent infections
○ Unusual infections
○ Persistent infections
○ Severe infections
○ Impaired inflammatory response
Eosinophils
Basophils
● The physical occurrence of damage to the tissue, whether from trauma or microbial invasion, is
what triggers and initiates the process of phagocytosis
1. Chemotaxis
2. Adherence
● Cell surface receptors - mediate cell to cell binding or adhesion of white blood cells
1. Immunoglobulin family - Antigen specific receptors (e.g. T cell receptor and surface
immunoglobulins)
2. Selectin family - Adhesion molecules help leukocyte adhere (e.g. Leukocyte adhesion
molecule-1 (LAM-1))
3. Integrin family - Interacts with the cell surface and extracellular matrix to enhance
leukocyte adhesion. Integrin molecules also play a role in the spread of malignant
tumor cells. If there are integrin receptors on tumor cells, it helps the tumor cells
attach to other cells in other parts of the body
3. Engulfment
● The most important step in the maturation of macrophages is the conversion from a normal
resting macrophage to the activated macrophage
● Cytokine driven conversion of the normal resting macrophage to the activated macrophage
● Macrophages can be activated:
1. during infection by release of macrophage activating cytokines: e.g. interferon-gamma
(IFN-y) and granulocyte colony stimulating factor (G-CSF)
2. From T-lymphocytes specifically sensitized to antigens from the infecting
microorganisms = basis of cell mediated immunity monocyte
● Signs of inflammation:
○ Redness
○ Heat
○ Pain
○ Swelling
● Stages of inflammatory response:
1. dilation of capillaries to increase blood flow
2. microvascular structural changes and escape of plasma proteins from bloodstream
3. leukocyte transmigration through endothelium and accumulation at the site of injury
● Primary goal of this inflammatory response is to localize and remove the pathogen and to repair
the surrounding tissue, however, it could lead to sepsis.
Sepsis
● Toll-like receptors (TLR) cause antigen presenting cell (APC) to produce pro-inflammatory
cytokines: TNF( tumor necrosis factor), IL-1, IL-6
● Liver is stimulated to produce C-reactive protein (C-RP)
● cytokines activate circulating polymorphonuclear leukocytes (PMNs)
● APCs (adaptive immune) present bacterial antigen to T-cell receptor: using a Class II major
histocompatibility complex (MHC) protein and co-stimulation of CD28
● Lymphocytes and plasma cells are the primary cells that act in the adaptive immune response in
both the humoral and cellular systems
● Two classes of specialized cells:
1. T lymphocytes
2. B lymphocytes
Lymphocytes
1. Thymus
2. Bone marrow, fetal liver
Thymus: Function
● Lymph nodes
○ Contain lymph fluid which contains proteins, minerals and lymphocytes which will attack
and destroy the foreign antigens
○ Filters, recycles and replenishes lymph fluid according to our bodies needs
● Spleen
○ filters blood by removing cellular waste and getting rid of old/damaged blood cells
● Gut-associated lymphoid tissue (GALT)
○ Peyer’s patches in intestines and liver
○ Important for the development of tolerance against ingested antigens
○ Patches of lymphocytes in the GI system, specifically pre B lymphocytes, these meet
antigens from the gut and enter general circulation and re-enters back into the gut
○ lymphocyte recirculation
● Thoracic duct
○ thoracic duct lymph – rich source of mature T cells
● Bronchus-associated lymphoid tissue (BALT)
○ lymphoid tissue in lower respiratory tract
○ Mainly associated with IgA production in response to inhaled antigen
● Skin-associated lymphoid tissue
○ Antigens introduced through the skin are presented by epidermal cells
○ epidermal cells then interact with lymphocytes in skin and in draining lymph nodes
● Blood
○ Mature lymphocytes in circulation
○ An increase or decrease in lymphocytes in the blood means there is something going on
with the thymus, bone marrow, or any of the other secondary tissues
● Secondary lymphoid organs allow migration and interaction between antigen-presenting cells
(APCs), T and B lymphocytes, follicular dendritic cells (FDCs) and other stromal cells
○ Results in effective generation of humoral immune responses
○ Proliferation of T and B lymphocytes in secondary/peripheral lymphoid tissues is
primarily dependent on antigenic stimulation
● Tumor necrosis factor (TNF), lymphotoxins and cytokines can signal the production of T&B
lymphocytes
T Cell Maturation
Cluster of Differentiation
● Double-negative thymocytes:
○ Early thymocytes that lack T cell receptors: CD4 and CD8
○ These cells proliferate in the outer cortex of the thymus under the influence of
Interleukin-7 (IL7) - critical for growth and differentiation
○ They develop beta (β), gamma (γ) and delta (δ) chains depending on their genetic makeup
○ chains classify thymocytes as positive or negative; which ultimately affects the role of
what the T cells take on
○ increased numbers of double negative lymphocytes (CD4-CD8-): individuals with
autoimmune and lymphoproliferative disorders and graft versus host disease
● Double-positive thymocytes:
○ cells with both CD4+ and CD8+
○ increased numbers of double-positive thymocytes: immune inflammatory diseases, viral
infections and cancer
T Lymphocyte: Subsets
T Lymphocytes: Function
B Lymphocytes: Overview
Function
Subsets
● B1 cells: CD5 marker, appear to form self-renewing set, respond to common microbial antigens,
occasionally generate autoantibodies
● B2 cells: most of adult B lymphocytes, generate a greater diversity of antigen receptors, responds
effectively to T-dependent antigen
Plasma Cells
● When B cells are stimulated by interleukins, they mature into plasma cells
● Function is synthesis and excretion of the 5 classes immunoglobulins (IgM, IgG, IgD, IgA, IgE)
● Increased: nonmalignant disorders, viral disease (e.g. rubella, infectious mononucleosis), allergic
conditions, chronic infections, and collagen diseases
● Plasma cell dyscrasias plasma cells greatly increased or infiltrate bone marrow completely (e.g.
multiple myeloma, Waldenström's macroglobulinemia)
1. Primary disorders:
● Symptoms: recurrent upper and lower respiratory tract infections and/or diarrhea, abscesses,
sepsis, or meningitis
● Laboratory testing: complete blood cell count (CBC), platelet count, erythrocyte sedimentation
rate (ESR)
● Screen for common immunodeficiencies: immunoglobulin testing, complement testing, cell-
mediated immunity testing, and the neutrophil function test
● Additional laboratory testing: should include a general metabolic panel to assess overall
general health, HIV types 1 and 2, protein electrophoresis, sweat chloride, and pneumococcal
antibody IgG titers pre- and post-vaccine in patients with only recurrent sinopulmonary
infections.
● If all initial test results normal: IL-1 receptor-associated kinase-4 (IRAK-4) deficiency screening
or a Toll-like receptor function assay:
● abnormal results = innate immune deficiency
Complement Pathways
Complement Pathways
1. C1 complex is made up of C1q, C1r, & C1s, it recognizes one bound IgM or two IgG
○ C1q first binds to Fc portion of IgG or IgM
○ C1r and C1s attach to form activated C1 Complex (first enzyme of pathway)
2. Activated C1 enzymatically cleaves C4 into C4a and C4b
3. Activated C1 also cleaves C2 into C2a and C2b
4. C4b binds to adjacent proteins and carbohydrates on antigen surface and also binds to C2a
forming C4b2a (C3 convertase)
○ Classical complement pathway is now activated
1. C3b molecule bind to C4b2a on the antigen surface to form C4b2a3b (C5 convertase)
2. C5 convertase cleaves C5 to C5a and C5b
3. C5b binds to surface of target cells and subsequently binds C6, C7, C8 and a number of
monomers of C9 to form C5b6789 (MAC)
4. C5bC6C7C8 complex polymerizes C9 to form a tube structure,
a. the tube inserts itself into the membrane of the antigen
b. It spans the membrane of the cell thats being attacked which allows ions to flow freely
between the inside and outside of the cell
c. This enhances osmotic cytolytic reaction
d. Influx of sodium and water leads to disruption of osmotic balance
e. MAC complex - think of it like a “pin” that causes a balloon to burst
5. Cell lysis occurs
● Example of classical pathway: Immediate severe transfusion reaction (transfusion of wrong ABO
type)
Regulation
● Once these antigens are destroyed we do not want the pathways to continue as it will cause injury
to our own cells and tissues
● Factor H which prevents the association between C3b and factor B
○ Competes for site on C3b
○ Eventually leading to C3 inactivation
● Inflammatory conditions
○ E.g. trauma, acute illness (myocardial infarction)
● Testing of limited clinical significance - there are other tests that are more specific to
inflammatory diseases
● Type of cytokines
● Plays an important role in normal proliferation, differentiation and activation of several
hematopoietic and lymphoid cell lines
● Made by and act on lymphocytes
● Function:
○ Mediate local interactions between leukocytes by secreting peptides and proteins but do
not bind antigen
○ Modulate inflammation and immunity by regulating growth, mobility and differentiation
of lymphoid cells
Type I IFNs
● Hematopoietic Stimulator
○ Stem cell factor that acts on immature stem cells in the bone marrow and thymus to
promote proliferation
● Chemokines
○ Large family of cytokines
○ Stimulate leukocyte movement from the blood to the tissue site of infection
○ Regulate migration of PMNs and mononuclear leukocytes within tissue
HLA Nomenclature
● HLA antigens:
○ Letter designating the locus
○ Number indicating the antigen
● HLA class I antigens are found on surface of platelets, leukocytes and most nucleated cells
● HLA class II antigens are found on antigen-presenting cells e.g. macrophages, dendritic cells, and
B cells
● In the circulation, the number of cells expressing Class I antigens is greater than the number of
cells with Class II antigens
● Because Class II antigens are not found on platelets, it is not necessary to match class II antigens
when HLA-compatible platelets are requested HLA-compatible platelets are requested
● Serologic typing of the HLA antigens is being replaced by molecular methods because:
○ Antibodies can react to more than one epitope (or cross-reactive antibodies)
○ Specific antibodies have not been developed to recognize many different HLA antigens
● HPCs can be obtained from bone marrow, peripheral blood, and cord blood
● Used to treat diseases: e.g. aplastic anemia, leukemia, lymphoma, and Hodgkin’s disease
● HLA matching at the allelic level is important to avoid rejection and graft versus-host disease
(GVHD)
○ Preformed HLA antibodies and ABO compatibility less important in HPC transplants
compared with solid organ transplants
Platelet Antigens
Platelet Antibodies
● Donor lymphocytes (graft) multiple and attack the patient cells (host)
● Recipient are often on immunosuppressants
○ Donor cells able to multiple
○ Organ rejection is more likely to occur
● Allele-level matching important for optimal graft survival
● GVHD can occur in immunocompromised patients receiving blood components
○ Irradiation prevents viable donor leukocytes within the blood components from
replicating by destroying mitotic activity and blast formation
○ Leukocyte reduction in blood components not enough to avoid GVHD because small
amounts of “live” leukocytes can proliferate
● Laboratory results:
● Initially present as decreased total lymphocyte concentrations: indicating immunosuppression or
immunodeficiency
● as GVHD progresses: evidence of inflammation:
○ increased C-reactive protein (CRP) level
○ elevated leukocyte count with granulocytosis
○ increased erythrocyte sedimentation rate (ESR)
○ complications of anemia and liver disease: o increased levels of bilirubin and blood
enzymes (e.g. transaminases, alkaline phosphatase)
○ presence of opportunistic pathogens (e.g. CMV)
● Pathologic features:
○ lymphocytic and monocytic infiltration into perivascular spaces of dermis and dermo-
epidermal junction of the skin and into the epithelium of oropharynx, tongue, and
esophagus
○ infiltration into base of intestinal crypts of small and large bowels and into periportal area
of liver, with secondary necrosis of cells in infiltrated tissues