Comparison of Vegetation Indices For Estimating Above-Ground
Comparison of Vegetation Indices For Estimating Above-Ground
article info a b s t r a c t
Article history: Mangroves play a pivotal role in providing ecological benefits and services to reduce and adapt to
Received 24 November 2020 climate change impact on coastal ecosystem. They are capable of absorbing carbon, which is crucial
Received in revised form 4 March 2021 in controlling CO2 levels in the atmosphere. This research aims to assess the accuracy of selected
Accepted 7 March 2021
vegetation indices for estimating above-ground carbon (AGC) stocks of mangroves using PlanetScope
Available online 10 March 2021
images in Bedul, Banyuwangi, East Java Province, Indonesia. A semi-empirical approach was used to
Keywords: assess and map mangrove AGC, starting with applying the allometric equation to calculate field-
Above-ground carbon stock measured species-specific AGC stocks. Regression analyses were applied to develop a relationship
Mangroves between field AGC and vegetation indices derived from PlanetScope Image, including Normalized
PlanetScope image Difference Vegetation Index (NDVI), Difference Vegetation Index (DVI), and Enhanced Vegetation Index
Vegetation index
(EVI). The Standard Errors of Estimates (SE) were 31.41, 32.93, and 31.63 tons/ha for DVI, EVI, and NDVI,
respectively. Thus, carbon stocks estimation, including DVI as an independent variable, is considered
more accurate than other vegetation indices tested in this research
© 2021 Elsevier B.V. All rights reserved.
https://doi.org/10.1016/j.rsma.2021.101730
2352-4855/© 2021 Elsevier B.V. All rights reserved.
E. Purnamasari, M. Kamal and P. Wicaksono Regional Studies in Marine Science 44 (2021) 101730
method generally uses image transformation like vegetation in- creates PlanetScope images that are ready to use and geometri-
dices to measure vegetation density levels, which are related to cally, radiometrically, and atmospherically correct. Image mask-
biomass, by applying a specific algorithm to a satellite image. ing is aimed to separate the research area from the non-observed
The vegetation index transforms the spectral values of several re- area located in the same image scene. The research area was
mote sensing bands to accentuate those of vegetation objects. In the mangrove forest in the Bedul Mangrove Area, Banyuwangi.
practical terms, it is a mathematical transformation that involves Masking was also applied to separate between water bodies and
several bands at once and produces a new, more representative land cover types other than mangroves using visual interpretation
image of vegetation objects (Danoedoro, 2012). with the help of the image color composite. The RGB composite
In this research, three vegetation indices (VIs) were selected: used was 432 (NIR, Red, and Green).
Normalized Difference Vegetation Index (NDVI), Difference Veg- In this study, an image transformation, PCA, was conducted
etation Index (DVI), and Enhanced Vegetation Index (EVI). These automatically by utilizing tools and features in the image pro-
VIs were selected after factoring in numerous literature studies cessing software. The PlanetScope image bands, namely Blue,
and research reporting their strengths and weaknesses in dif- Green, Red, and Infrared, were inputted to the PCA. This image
ferent circumstances (Wicaksono et al., 2011; Wicaksono, 2017; processing produced new pixel values that allowed differences in
Kamal et al., 2016; Nguyen et al., 2019; Xia et al., 2020; Zhu et al., mangrove species to be visually observable from the PCA results.
2020; Aljahdali et al., 2021). Thus, it was intended to assess their Spectral transformation based on PCA accentuates masked or
accuracy in estimating above-ground carbon stocks from Plan- hidden information that ordinary spectral bands cannot display.
etScope images in the Bedul Mangrove Area, Banyuwangi, East PCA rotates data to produce new bands in a small amount, but
Java Province, Indonesia. The research differs from previous stud- each of these bands contains specific and unique information
ies in remote sensing data used and area observed. Accordingly, (Murti and Wicaksono, 2014).
it was also designed to investigate whether the three vegetation Table 1 shows the algorithms of the three vegetation indices
indices produced accurate estimates with such differences. analyzed in this study: NDVI, EVI, and DVI. The researchers chose
to use these spectral transformation tools because they had a
2. Data and methods high sensitivity to vegetation biomass, especially NDVI and EVI
(Jensen, 2004). Previous studies have also confirmed that they
2.1. Research site can estimate carbon stocks accurately in respective research lo-
cations. Therefore, this research was designed to prove which of
This research was conducted in the Bedul Mangrove Block, a the three indices could produce estimates with the best accuracy
mangrove forest part of the Alas Purwo National Park in Bloksolo in the area observed.
Sub-village, Sumberasri Village, Purwoharjo District, Banyuwangi
Regency. According to the minutes of the areal measurement on 2.3. Field sampling collection
May 27, 1983, the national park covers 43,420 hectares of land.
Lowland tropical rainforest ecosystem composes most of the park, The sampling point map was prepared based on the PCA
while the mangrove forest area, situated at the Grajagan Bay, is results. Samples were collected from several plots, the plot was
currently about 1200 hectares. The Grajagan Bay is geographically square and 20 m × 20 m in size, which was later subdivided
located between 114◦ 13’20.203’’ - 114◦ 20’459.79’’ E and 8◦ into three parts: 20 m × 20 m, 10 m × 10 m, and 5 m × 5
35’52.79’’ - 8◦ 37’28.697’’ S (Fig. 1). m, according to the spatial resolution of the image used. Each
The Alas Purwo National Park management identified 27 plot size was used to measure different tree diameters: the 20
species of true mangroves in several locations. About 24 of them m × 20 m plots for trees with a diameter of >20 cm, the 10
are distributed along the Segara Anak River, which is dominated m × 10 m plots for those with a diameter of 10−20 cm, and
by Rhizophora mucronata, Ceriops tagal, and Bruguiera gymnor- the 5 m × 5 m plots for those with a diameter of <10 cm
rhiza. The river influences the mangrove forest development at (SNI 7724: 2011). The fieldwork comprised observations, mea-
Grajagan Bay. Most mangrove species thrive in muddy soils, surement of diameter at breast height (DBH), mangrove species
particularly where silt accumulates. Along ±15 km of the Segara identification, and canopy density measurement. DBH was mea-
Anak River, the mud substrate has varying depths: from 0.14 m sured from mangroves in the size of sapling, pole, and stand,
to 2.1 m, and is composed mainly of mud, with some sandy mud and the mangrove species were identified using an ecological ap-
substrates found at a few sites. proach considering mangrove characteristics and growth zones.
An allometric equation was then applied to these data to produce
2.2. Image dataset biomass estimates for mangrove saplings, poles, and stands. This
research used the species-specific allometric equation formulated
This research used the level-3B PlanetScope image recorded on by Komiyama et al. (2008) because it has been designed for use
December 3, 2019. This image is an Ortho Scene Product, i.e., an in Asian mangroves and is, therefore, highly relevant for appli-
image product that has been orthorectified and projected to a cations in Indonesian regions. Above-ground carbon stocks (AGC)
map projection. It has also been geometrically corrected using were computed from above-ground biomass based on the rules
GCP (Ground Control Points) obtained from the Digital Elevation published in the Indonesian National Standards (SNI) 7724:2011,
Model (DEM) data with 30 m to 90 m resolution and position in which 0.47 or 47% of biomass is carbon.
accuracy of less than 10 m. The cartographic projection system
was UTM with the horizontal datum WGS 84, and the resampling 2.4. AGC estimation and mapping
method used was cubic convolution.
The image processing did not include radiometric correction The mangrove AGC mapping began with building a corre-
because the PlanetScope image product was already corrected lation between two variables: the vegetation index values and
radiometrically and corrected to Surface Reflectance. This radio- field-measured carbon data using correlation and regression anal-
metric correction involves conversion to absolute radiometric yses. However, before conducting these analyses, the normality
values based on calibration coefficients that are always updated Kolmogorov–Smirnov test was applied to both data to fulfill the
with on-orbit calibration techniques and correction of radiomet- requirement of data normality in parametric statistical modeling.
ric values to minimize calculation errors (Planet Labs, 2020). It Correlation analysis is a statistical method used to identify the
2
E. Purnamasari, M. Kamal and P. Wicaksono Regional Studies in Marine Science 44 (2021) 101730
Fig. 1. The research location laid on the PlanetScope image, with areal boundaries defined based on the Principal Component Analysis (PCA) results.
Table 1
Vegetation Index algorithms.
No Index Algorithms References
1 Difference Vegetation NIR-Red (1) Tucker (1980)
Index (DVI)
2 Enhanced Vegetation G*((NIR- (2) Huete et al. (2002)
Index (EVI) Red)/(NIR+C1*Red-
C2*Blue+L))
3 Normalized Difference (NIR- (3) Rouse et al. (1973)
Vegetation Index (NDVI) Red)/(NIR+Red)
Table 2
Field-collected data.
Sample Coordinates Average Average tree Frac- Dominant
points DBH (cm) height (m) tional species
canopy
cover
X Y
1 −8.59648 114.25760 27.8 10.8 0.40 R. mucronata
2 −8.59587 114.26702 29.3 11.7 0.34 E. agallocha
3 −8.59882 114.27336 40.9 14.5 0.33 R. mucronata
4 −8.59813 114.27344 54.8 23.1 0.14 R. mucronata
5 −8.59744 114.27371 39.2 17.6 0.18 R. mucronata
6 −8.59903 114.27770 45.0 13.6 0.22 A. officinalis
7 −8.59988 114.27762 40.9 18.9 0.21 R. apiculata
8 −8.60047 114.27749 50.6 18.8 0.09 R. apiculata
9 −8.60043 114.28008 47.9 11.9 0.05 R. apiculata
10 −8.60120 114.27996 47.1 23.3 0.21 R. apiculata
11 −8.59279 114.27028 38.5 15.9 0.31 R. mucronata
12 −8.59202 114.27024 28.2 8.2 0.18 C. decandra
13 −8.59250 114.26817 36.3 14.1 0.29 S. alba
14 −8.59010 114.26584 22.6 5.7 0.09 C. tagal
15 −8.59852 114.28223 48.8 19.5 0.20 R. apiculata
16 −8.59796 114.28265 48.2 16.7 0.17 R. apiculata
17 −8.59710 114.27887 41.3 19.1 0.15 S. alba
18 −8.59524 114.27602 34.2 16.1 0.27 S. alba
19 −8.59398 114.27277 35.3 10.8 0.15 S. alba
20 −8.59297 114.27310 22.8 5.9 0.18 C. decandra
relationship between two or more quantitative independent and that, according to previous studies, results in a strong correlation.
dependent variables and produce a coefficient (r) signifying their Linear regression analysis changed image pixel values into abso-
correlation degree. For this purpose, this research used the Pear- lute mangrove AGC and, thus, evaluated the best mangrove AGC
son product-moment correlation with a 95% significance level. estimation with vegetation index as the input.
Vegetation index values that exceeded the r-value for sample size All carbon stock models were tested for accuracy to obtain the
n and had a significant relationship with field-measured carbon best empirical modeling for each vegetation index. However, the
were inputted to the empirical modeling using regression analy- coefficient of determination resulting from the regression analysis
sis. Here, the regression model refers to simple linear regression (R2 ) cannot be used to compute the accuracy of the empirical
3
E. Purnamasari, M. Kamal and P. Wicaksono Regional Studies in Marine Science 44 (2021) 101730
carbon stock modeling. Despite the widely used measures for Table 3
assessing predictive models for numerical data, Alexander et al. Biomass and carbon stock calculation results.
(2015) and Li (2017) suggested that R2 is not an appropriate Sample points Biomass (ton/ha) Carbon stock (ton/ha) Dominant species
measure to evaluate modeling results’ accuracy. R2 is only valid 1 193.53 90.96 R. mucronata
for developing models from training datasets and not suitable for 2 114.18 53.66 E. agallocha
3 210.71 99.03 R. mucronata
model accuracy tests using validation sample datasets. It does not 4 242.75 114.09 R. mucronata
evaluate the absolute value of the predicted models. Therefore, 5 121.23 56.98 R. mucronata
the Standard Error of Estimate (SE) was used to assess the quality 6 123.41 58.00 A. officinalis
and quantity of the estimated carbon stocks (i.e., AGC obtained 7 109.09 51.27 R. apiculata
8 133.77 62.87 R. apiculata
from the linear regression analysis) by comparing them with the
9 113.95 53.56 R. apiculata
observed carbon stocks. The lower the SE value, the higher the 10 137.76 64.75 R. apiculata
accuracy. However, SE only shows the value of the prediction 11 108.16 50.84 R. mucronata
of accuracy, but not the distribution pattern of the predicted 12 45.35 21.32 C. decandra
values. In addition to SE, we also applied the goodness-of-fit 13 63.94 30.05 S. alba
14 27.36 12.86 C. tagal
using the 1:1 line for accuracy testing, particularly to determine 15 234.01 109.98 R. apiculata
whether the estimated data and accuracy test samples showed an 16 154.00 72.38 R. apiculata
over-or under-estimated pattern. In this test, a red line marked 17 69.58 32.70 S. alba
the ideal 1:1 value between the field-measured and estimated 18 53.01 24.92 S. alba
19 70.73 33.24 S. alba
carbon stocks (Kamal et al., 2016). Over-estimation occurred if
20 38.10 17.91 C. decandra
the linear plot distribution skewed toward the image-estimated
carbon stocks, whereas under-estimation occurred if it skewed
toward the field-measured carbon stocks.
The relative rank proposed by Poudel and Cao (2013) was used affect the biomass and carbon content. According to Dharmawan
to compare the performance of each vegetation indices in AGB and Siregar (2008), 98.7% of biomass is influenced by the number
estimation and mapping. The relative rank shows the relative of trees and DBH because the amount of biomass calculated using
position of each vegetation indices used in the mangrove AGB the allometric equation strongly depends on the number and
estimation. The relative rank is defined as: diameter of mangrove trees.
Table 4 Table 5
The Kolmogorov–Smirnov normality test results. Comparison of the vegetation indices used in this research.
Input Statistics Input Data normality r R2 SE
Samples Mean StDev Dn KStable DVI Normal 0.820 0.673 31.41
Carbon observed 20 55.57 29.94 0.13 0.30 EVI Normal 0.779 0.607 32.93
DVI 20 0.18 0.03 0.10 0.30 NDVI Normal 0.716 0.513 31.63
EVI 20 0.49 0.09 0.07 0.30
NDVI 20 0.61 0.06 0.11 0.30
Fig. 2. Regression function between field-measured AGC and (a) DVI, (b) EVI, and (c) NDVI.
Fig. 3. Spatial distribution of AGC derived from (a) DVI, (b) EVI, and (c) NDVI (the AGC value are classified for visualization and comparison purposes only).
additional blue band. Besides, it has a constant value in its cal- Candra et al. (2016) conducted a study in the mangrove forest
culation, affecting the resulting index value. However, Frananda area of the Ngurah Rai Grand Forest Park, Bali, and found that
the mRE-SR index had higher accuracy than DVI and EVI. This
et al. (2015) found that EVI could produce a high R2 value (0.71) area has silty sand-textured and muddy substrates, creating a
but not the best value in the accuracy test. suitable environment for Rhizophora mucronata that thrive in mud
6
E. Purnamasari, M. Kamal and P. Wicaksono Regional Studies in Marine Science 44 (2021) 101730
Fig. 4. The 1:1 goodness-of-fit plot of field-measured AGC against (a) DVI-estimated AGC, (b) EVI-estimated AGC, and (c) NDVI-estimated AGC.
to gravel substrates (Hermawan et al., 2014; Wiyanto and Faiqoh, Declaration of competing interest
2015). Meanwhile, Hamdan et al. (2013) found that NDVI had
the highest coefficient of correlation when used in the Matang The authors declare that they have no known competing finan-
Mangrove area in the Northwest of Peninsular Malaysia. Here, cial interests or personal relationships that could have appeared
mangroves grow under the influence of a tropical climate (warm to influence the work reported in this paper.
and humid), with an average annual temperature of 23.7−33.4◦
Celsius, a relative humidity of 76.5−83.5% (Goessens et al., 2014), Acknowledgments
and year-round rainfall varying from 2000 to 3000 mm, and
semi-diurnal tides with an amplitude of about 3.3 m (Ashton This research was funded by the 2020 Penelitian Dasar (Fun-
et al., 1999). This current research has different results from damental Research) Grant scheme provided by the Ministry of Re-
the above studies in that it observes mangrove forests with dif- search and Technology/ National Research and Innovation Agency
ferent characteristics, compositions, and tide-sensitive waterlog- of the Republic of Indonesia (contract number
ging conditions. Moreover, the distribution and dynamics of soil 2979/UN1.DITLIT/DIT-LIT/PT/2020). The authors would like to
organic carbon content may differ from other research loca- thank (1) the Department of Geographic Information Science at
tions mentioned above as these variables are influenced by tides, the Faculty of Geography, Universitas Gadjah Mada, for providing
vegetation biomass and productivity, species composition, and research facilities and equipment, (2) the Alas Purwo National
sedimentation (Sherman et al., 2003). Park management for granting fieldwork permits, (3) R.F. Lestari,
S.A. Hafid, S.M. Ridha, A.D. Rahmandhana, M.F. Hidayatullah, M.A.
Purnomo, and A. Widodo for their invaluable assistance during
4. Conclusion
the fieldwork.
There are 14 mangrove species found along the Segara Anak References
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