Unit 3
Unit 3
Contents
3.1 Introduction
3.2 Mendelian Population
3.3 Genetic Polymorphism
3.4 Hardy-Weinberg Law
3.5 Deviations from Hardy-Weinberg Law or Factors Affecting Gene Frequencies
3.6 Consanguineous and Non-consanguineous Mating
3.7 Genetic Load
3.8 Summary
References
Suggested Readings
Sample Questions
3.1 INTRODUCTION
Genetics, a discipline of biology, is the study of fundamental units of inheritance
called genes, heredity, and variation in living organisms. This hereditary material
(gene), whether as a unit of segregation, recombination, mutation, or function, is
the unifying idea basic to the field of genetics. In 1866, Gregor Mendel put
forward the mechanisms for heredity and variation. The Mendelian laws: the
independent segregation and recombination of dominant and recessive characters
constitute the cornerstone of the modern science of genetics. Mendel’s
monumental work (1866) on the principles of inheritance, that is, Mendel’s Laws
of inheritance, remained long ignored, and only received attention in 1900, sixteen
years after his death (1884). It was not until 1900, when three botanists, de Vries,
Correns, and Von Tschermak independently rediscovered the Mendelian
Principles. Later Mendel’s experiments were extended to many species of plants
and animals including man.
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Human Genetics Human genetics is a subject of special interest to us as students of anthropology.
Human genetics itself is further subdivided into the areas of medical genetics,
biochemical genetics, cytogenetics, somatic cell genetics, immunogenetics, formal
or mathematical genetics, population genetics, and anthropological genetics.
These subdivisions of human genetics are closely interrelated and interdependent.
For example, the study of the distribution and evolution of the abnormal
haemoglobins in human populations witnessed the union of medical genetics,
biochemical genetics, formal genetics, and population genetics.
Population Genetics
Study of a whole population is, in fact, often superior to the collection of large
pedigree, because pedigree has unusual characteristics and is of specific interest,
and thus is not representative of a population. Within many populations an
equilibrium of genotypes prevails. This was first pointed out in 1908
independently by the mathematician G. H. Hardy and the physician W. Weinberg
whose several contributions laid the foundations of the genetic study of natural
populations of man and wild animals. The foundations by Sewall Wright, R. A.
Fisher and J. B. S. Haldane helped the formation of modern population genetics.
The mathematical theory of population genetics was developed in the early
twentieth century due largely to the work of Sewall Wright, Ronald Fisher, and
J. B. S. Haldane. So the population genetics deals with the consequences of
Mendelian laws on the composition of the population with special reference to
the effects of mutation, selection, migration, and chance fluctuation of gene
frequencies.
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mating patterns, gene flow, natural selection, etc. The genetic approach uses the Population Genetics
concept of the Mendelian population, which Dobzhonsky has defined as “a
reproductive community of sexual and cross fertilizing individuals which share
in a common gene pool”. If the isolate or the Mendelian population is not changed
by natural selection, nor by mutation, nor by migration, and if the population
size is large and if individuals are not mating assortatively (that is, random choice
of partners), then the isolate is said to be in equilibrium. These assumptions are
fundamental to population analysis and for maintaining an equilibrium of
genotypes from generations to generations.
Although, all human gene pools are open to varying degree, it is evident that
panmixis does not take place within the total species. The more important
mechanisms maintaining genetic isolation of populations today are cultural rather
than geographical.
Breeding Population
In addition to the problem introduced by the biological openness of human-
population systems, accurate definition of a human Mendelian population is
complicated by the fact that man clusters in social groupings which may or may
not serve as biological breeding units. So the first problem of the population
geneticist, therefore, is to identify and describe, as accurately as possible, the
biological population before he can undertake an analysis of the gene pool and
forces acting on it. Because direct analysis of a population’s gene pool is
impossible, all conclusions regarding its composition are necessarily inferential,
and must be made on the basis of direct examination of the phenotypes of the
reproducing individuals. To infer the composition of a gene pool at a single
point in time the population geneticist must first enumerate and describe the
actual progenitors, that is, the parents in a population. These progenitors constitute
the breeding population.
One of the oldest known such polymorphism is the ability to taste phenyl-thio-
carbamide (PTC), or phenyl-thio-urea (PTU). For some people PTC has only a
faint taste or no taste at all; for others it has a very bitter taste. More specifically
there is a single dominant gene T (with incomplete penetrance) that determines a
high sensitivity for the taste of PTC. Non-tasters are homozygous for the recessive
allele t. When both parents are non-tasters, all their children are non-tasters.
When one parent is taster and the other is not, either all or half of their children
will be tasters, depending on whether or not the parent of the dominant (tasting)
type is homozygote or heterozygote.
Male gametes → P q
↓ Female gametes
P P2 pq
Q pq q2
Genotype frequencies: p2+2pq+q2
Let us examine what would be expected under random mating in a simple and
general case of an autosomal locus with two alleles A and a with frequencies, p
and q and the corresponding genotypes AA, Aa and aa with the corresponding
frequencies, p2:2pq:q2. The various mating types and the expected progeny are
given in the following table.
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Applications of Hardy-Weinberg Law Population Genetics
• Non-random mating
Random mating, or panmixis, refers to the selection of a partner regardless of
that partner’s genotype. Non-random mating can lead to an increase in the
frequency of affected homozygotes by two mechanisms, either assortative mating
or consanguinity.
Assortative mating
Assortative mating is the tendency for human beings to choose partners who
share characteristics such as height, intelligence and racial origin for marriage. 47
Human Genetics Consanguinity
Consanguinity is the term used to describe marriages between blood relatives
who have at least one common ancestor no more remote than a great-great
grandparent. Widespread consanguinity in a community will lead to a relative
increase in the frequency of affected homozygotes with a relative decrease in the
frequency of heterozygotes.
• Mutation
The validity of the Hardy-Weinberg principle is based on the assumption that no
new mutations occur. If a particular locus shows a high mutation rate then there
will be a steady increase in the proportion of mutant alleles in a population. In
that case the law will not be applicable.
• Selection
In the ‘ideal’ population there is no selection for or against any particular genotype.
In reality for deleterious characteristics there is likely to be negative selection with
affected individuals having reduced reproductive fitness in genetical sense, as the
genes would not be transmitted in the next generation. In the absence of new
mutations this reduction in fitness will lead to a gradual reduction in the frequency
of the mutant gene and will cause disturbance of Hardy-Weinberg equilibrium.
Selection can act in the opposite direction by increasing fitness. For some
autosomal recessive disorders there is evidence that heterozygotes show a slight
increase in biological fitness as compared with unaffected homozygotes. This is
referred to as heterozygote advantage. The best understood example is sickle-
cell disease in which affected homozygotes have severe anemia and often show
persistent ill-health. However, heterozygotes are relatively immune to infection
with Plasmodium falciparum malaria because if their red blood cells are invaded
by the parasite they undergo sickling and are rapidly destroyed. In areas in which
this form of malaria is endemic, carriers of sickle-cell anemia, who are described
as having sickle-cell trait, are at a biological advantage as compared with
unaffected homozygotes. Therefore, in these communities, there will be a tendency
for the proportion of heterozygotes to increase relative to the proportions of
normal and affected homozygotes. Once again this will result in a disturbance of
Hardy-Weinberg equilibrium.
We have earlier discussed about selection favouring heterozygotes as in sickle-
cell anaemia, and thalassaemia. There is also the opposite situation, that is
selection against heterozygotes, as we find in maternal-foetal incompatibility
(Erythroblastosis fetalis) as is observed for the allele R (Rh blood group), and
also for other blood group genes (Rh-ABO incompatibility).
Mutation alters genotype frequencies by introducing new alleles.
Heterozygotes and new mutations maintain the frequencies of deleterious
alleles in populations.
Different alleles are more likely to confer a survival advantage in different
environments. Cycles of infectious disease prevalence and virulence often
reflect natural selection.
In balanced polymorphism, a disease-causing allele persists because
heterozygotes resist a certain infectious illness or environmental condition.
Gene flow alters genotype frequencies by adding and removing alleles from
populations.
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Population Genetics
Clines are gradual changes in allele frequencies between neighboring
populations.
Geographical barriers and language differences often create great differences
in allele frequencies.
Genetic drift occurs when a subset of a population has different allele
frequencies than the larger population.
The founder effect occurs when a few individuals leave a community to
start a new settlement. The resulting population may, by chance, either lack
some alleles from the original population or have high frequencies of others.
•` Genetic drift
In a large population the numbers of children produced by individuals with
different genotypes, assuming no alteration in fitness for any particular genotype
will tend to balance out, so that gene frequencies will remain stable. However, in
a small population it is possible that by random statistical fluctuation one allele
could be transmitted to a high proportion of offspring by chance, resulting in
marked changes in allele frequency from one generation to the next, so that
Hardy-Weinberg equilibrium is disturbed. This phenomenon is referred to as
random genetic drift. If one allele is lost altogether then it is said to be extinguished
and the other allele is described as having become fixed (www. faculty.ksu.edu).
• Gene flow (migration)
If new alleles are introduced into a population as a consequence of migration
with subsequent intermarriage, this will lead to a change in the relevant allele
frequencies. This slow diffusion of alleles across a racial or geographical boundary
is known as gene flow. The most widely quoted example is the gradient shown
by the incidence of the B blood group allele throughout the world. This allele is
thought to have originated in Asia and spread slowly westward as a result of
admixture through invasion.
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Fig. 4.1: The possible types of matings between different relationships
Population Genetics
People choose partners for marriage, and they do not contribute the same
numbers of children to the next generation. The marriage practices change
allele frequencies in populations.
Traits lacking obvious phenotypes may be in Hardy-Weinberg equilibrium.
Consanguinity and endogamy increase the proportion of homozygotes in
a population.
Effect of Consanguineous Marriages
The main genetic consequence of inbreeding is an increase in the proportion of
homozygotes. Through inbreeding recessive genes are more easily brought to
the fore.
Inbreeding Depression
Usually, inbreeding causes deterioration and outbreeding causes improvement
of most of the characters. Animal breeders noticed that inbreeding particularly
always lead to a deterioration in many important qualities; fertility for instance,
tends to decrease and many an inbred stock, has lost because the fertility level
became too low for the maintenance of the line in generations. In addition, some
traits such as overall general size also decrease. This phenomenon of deterioration
on inbreeding is known as inbreeding depression.
Heterosis
In contrast to inbreeding depression, if two independent pure lines are crossed,
the hybrids between them (at least in the first generation) mostly show a
considerable increase in size, fertility and many other desirable traits. This has
been called hybrid vigor or heterosis, and clearly has a great potential for
application in agriculture and animal husbandry. The first practical application
of hybrid vigor as a technique for crop improvement was applied to corn and it
led to a very significant increase in production. This practice is now being
extended to other plants and animals. These inbreeding and outbreeding
consequences are also seen in man. The genetic effects of inbreeding are similar
to positive assortative mating. Both increase the frequency of homozygous
genotypes at the expense of heterozygotes, relative to Hardy-Weinberg
proportions. So it is clear that the inbreeding affects genotype frequencies and
inbreeding along with selection modifies gene frequencies in a population.
It should be emphasised that the increasing homozygosity i.e., the general effect
of inbreeding does not predict whether inbreeding is good or bad. It depends on
the nature of the homozygotes. Many instances can be cited of talented persons
whose parents were first cousins or otherwise closely related. Presumably
consanguinity made it easier for ‘good’ genes to come together in these cases
(example: Charles Darwin).
On the other hand, there is considerable evidence that homozygous recessives,
albinism, alkaptonuria, etc., and the lethals are encountered with greater frequency
in consanguineous marriages than in marriages of unrelated persons. Studies in
Japan, where inbreeding is greater have shown increased rates of infant mortality
and congenital abnormalities. Studies in France, Sweden, United States, and
Japan have shown increased frequencies of certain physical diseases, and mental
disorders among children of first cousin mating.
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Human Genetics
3.7 GENETIC LOAD
Among source of variability affecting Darwinian fitness (adaptive value) may
lead to a genetic load. Crow (1970) proposed three definitions of genetic load of
which mostly used one is that the (expressed) genetic load is the fraction by
which the average population fitness is decreased in comparison with the genotype
showing the highest fitness.
3.8 SUMMARY
A population is a group of interbreeding members of the same species in a
particular area. Their genes constitute the gene pool. Population genetics considers
allele, genotype, and phenotype frequencies to reveal microevolution. Phenotypic
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frequencies can be determined empirically. Genotype frequencies change if Population Genetics
migration, nonrandom mating, genetic drift, mutations, or natural selection
operate. In Hardy-Weinberg equilibrium, frequencies are not changing. Hardy
and Weinberg proposed an algebraic equation to explain the consistency of allele
frequencies. The Hardy-Weinberg equation is a binomial expansion used to
represent genotypes in a population. According to Hardy-Weinberg equilibrium
all individuals mate with the same frequency and choose mates without any
consideration to phenotype. This seldom happens. We choose mates based on
certain characteristics, and some people have many more children than others.
Consanguinity increases the proportion of homozygotes in a population, which
may lead to increased incidence of recessive illnesses or traits.
Clines are changes in allele frequencies from one area to another. Clines may
reflect geographical barriers or linguistic differences and may be either abrupt or
gradual. Genetic drift occurs when a small population separates from a larger
one, or its members breed only among themselves, perpetuating allele frequencies
not characteristic of the larger population due to chance sampling. A founder
effect occurs when a few individuals found a settlement and their alleles form a
new gene pool, amplifying their alleles and eliminating others. Mutation
continually introduces new alleles into populations. Mutation does not have as
great an influence on disrupting Hardy-Weinberg equilibrium as the other factors.
The genetic load is the collection of deleterious alleles in a population.
Environmental conditions influence allele frequencies via natural selection.
Alleles that do not enable an individual to reproduce in a particular environment
are selected against and diminish in the population, unless conditions change.
Beneficial alleles are retained. In balanced polymorphism, the frequencies of
some deleterious alleles are maintained when heterozygotes have a reproductive
advantage under certain conditions.
Reference
Jurmain, R., Kilgore, L. and Trevathan, W. 1998. Essentials of Physical
Anthropology. Belmont California; Wadsworth.
www. faculty.ksu.edu accessed on February 19, 2011
Suggested Reading
Cavalli-Sforza, L. L. and Bodmer, W. L. 1971. The Genetics of Human
Populations. San Francisco; W. H. Freeman and Company.
Ford, E. B. 1967. Genetics for Medical Students. Sixth edition. London; Methuen
& Co. Ltd.
Hartl, D. L. and Clark, A. G. 2006. Principles of Population Genetics. 4th Ed.
Sunderland; MA. Sinauer Associates.
Mange, E. J. and Mange, A. P. 1994. Basic Human Genetics. Sunderland; MA.
Sinauer Associates.
Mueller, R. F. and Young, I. D. 1998. Emery’s Elements of Medical Genetics.
New York; Churchill Livingstone.
Stern, C. 1960. Principles of Human Genetics. San Francisco and London;
Freeman and Company.
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Human Genetics Sample Questions
1) What is a population? List three populations.
2) Explain the differences among an allele frequency, a phenotypic frequency,
and a genotypic frequency.
3) What does Hardy-Weinberg equilibrium mean?
4) What are the conditions under which Hardy-Weinberg equilibrium cannot
be met?
5) Why is knowing the incidence of a homozygous recessive condition in a
population important in deriving allele frequencies?
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