Application of Bioanalysis
Application of Bioanalysis
org
Revi e w A r t i c l e
A b s t ra c t
Recent years have witnessed the introduction of several high-quality review articles
into the literature covering various scientific and technical aspects of bioanalysis.
Now it is widely accepted that bioanalysis is an integral part of the pharmacokinetic/
pharmacodynamic characterization of a novel chemical entity (NCE) from the time of
its discovery and during various stages of drug development, leading to its market
authorization. In this compilation, the important bioanalytical parameters and its
application to drug discovery and development approaches are discussed, which will
help in the development of safe and more efficacious drugs with reduced development
time and cost. It is intended to give some general thoughts in this area which will form
basis of a general framework as to how one would approach bioanalysis from inception
(i.e., discovery of a lead molecule) and progressing through various stages of drug
development.
INTRODUCTION
The discovery and development of a new drug costs around $1 billion and
it may take approximately 10 years for the drug to reach the marketplace. [1]
Drug discovery and development is the process of generating compounds and
evaluating all their properties to determine the feasibility of selecting one novel
chemical entity (NCE) to become a safe and efficacious drug. Strategies in the
drug discovery and drug development processes are undergoing radical change.
For example, the contribution of pharmacokinetics (PK) to both processes is
increasing.[2,3] Furthermore, toxicokinetics has now become established as
an essential part of toxicity testing.[4,5] With this emphasis in the use of PK/
toxicokinetics and the greater potencies of newer drugs, a sensitive and specific
bioanalytical technique is essential.
The emergence of the field of bioanalysis as a critical tool during the process of
drug discovery and development is well understood and globally accepted.[6-9]
Over the past few decades, a plethora of assays has been continuously developed
for NCEs to support various stages of discovery and development, including
assays for important metabolites.[10-14] Additionally, multiple analytical procedures
Saurabh Pandey, Preeti
are available for prescription medicines (Rx) and/or generic products.[15-23]
Pandey, Gaurav Tiwari,
Bioanalytical data generated in discovery and pre-clinical programs are a valuable
Ruchi Tiwari
guide to early clinical programs. Plasma concentration–response data from these
Pranveer Singh
programs can be compared with those obtained in man. Such comparisons are
Institute of Technology,
Bhauti, Kanpur, particularly valuable during the phase one-initial dose escalation study. To
Uttar Pradesh, India maximize this, it is our practice to generate PK data between each dose increase.[24]
Address for correspondence:
Dr. Saurabh Pandey, BIOANALYSIS
Pranveer Singh
Institute of Technology, Kanpur,
Uttar Pradesh, India.
Bioanalysis is a term generally used to describe the quantitative measurement
E-mail: [email protected] of a compound (drug) or their metabolite in biological fluids, primarily blood,
plasma, serum, urine or tissue extracts.[25] A bioanalytical method consists of two
DOI: **** main components
Sample preparation: Sample preparation is a technique (LOD), recovery, reproducibility and ruggedness
used to clean up a sample before analysis and/or to (robustness).[31-33] Validation involves documenting,
concentrate a sample to improve its detection. When through the use of specific laboratory investigations,
samples are biological fluids such as plasma, serum that the performance characteristics of the method
or urine, this technique is described as bioanalytical are suitable and reliable for the intended analytical
sample preparation. The determination of drug applications. The acceptability of analytical data
concentrations in biological fluids yields the data used corresponds directly to the criteria used to validate
to understand the time course of drug action, or PK, the method.[34]
in animals and man and is an essential component
of the drug discovery and development process.[26] In early stages of drug development, it is usually not
Most bioanalytical assays have a sample preparation necessary to perform all of the various validation
step to remove the proteins from the sample. Protein studies. Many researchers focus on specificity, linearity
precipitation, liquid–liquid extraction and solid phase and precision studies for drugs in preclinical through
extraction (SPE) are routinely used.[27] Phase II (preliminary efficacy) stages. The remaining
studies penetrating validation are performed
Detection of the compound: The detector of choice when the drug reaches the Phase II (efficacy) stage
is a mass spectrometer.[26] Currently, the principle of development and has a higher probability of
technique used in quantitative bioanalysis is high becoming a marketed product. Presently, Guidelines
performance liquid chromatography coupled with for pharmaceutical methods in United States
tandem mass spectrometry (HPLC-MS/MS) using pharmacopoeia (USP), International Conference on
either electrospray ionization (ESI) or atmospheric Harmonization (ICH) and FDA provide a framework
pressure chemical ionization (APCI) techniques.[28] for regulatory submission must include study on such
The triple quadrupole (QqQ) mass spectrometer (MS), fundamental parameters.
when operated in the selected reaction monitoring
(SRM) mode, offers a unique combination of sensitivity, Validation parameters
specificity and dynamic range. Consequently, the There is a general agreement that at least the
QqQ MS has become the instrument of choice for following validation parameters should be evaluated
quantitation within the pharmaceutical industry. for quantitative procedures: selectivity, calibration
Since ESI and APCI can be operated at flow rates model, stability, accuracy (bias, precision) and limit
as high as 1 and 2 mL/min, respectively, most of of quantification. Additional parameters which
the convenience columns (e.g., C18, C8, C4, phenyl, might have to be evaluated include LOD, recovery,
cyanopropyl) are compatible. Recent technological reproducibility and ruggedness (robustness).
advances have made 1.7 μm particle size packing
material available. Coupling with high pressure pump Specificity/selectivity
and high-speed acquisition MS, ultra-high pressure A method is specific if it produces a response for only one
liquid chromatography (UPLC) offers unique high- single analyte. Since it is almost impossible to develop a
throughput and resolving power to obtain maximum chromatographic assay for a drug in a biological matrix
chromatographic performance and superior assay that will respond to only the compound of interest, the
Origi
sensitivity. [29] nal Aritcle term selectivity is more appropriate. The selectivity
of a method is its ability to produce a response for
Before a bioanalytical method can be implemented for the target analyte which is distinguishable from all
routine use, it is widely recognized that it must first other responses (e.g., endogenous compounds such as
be validated to demonstrate that it is suitable for its protein, amino acids, fatty acids, etc).[35]
intended purpose. A GLP (Good Laboratory Practices)
validated bioanalytical method is needed to support Accuracy
all development studies (e.g., toxicology studies and Accuracy of an analytical method describes the
human clinical trials). According to the Food and closeness of mean test results obtained by the method
Drug Administration (FDA) GLP guidance,[30] there to the true value (concentration) of the analyte. This
is a general agreement that at least the following is sometimes termed as trueness . The two most
validation parameters should be evaluated for commonly used ways to determine the accuracy or
quantitative procedures: selectivity, calibration method bias of an analytical method are (i) analyzing
model, stability, accuracy (bias, precision) and limit control samples spiked with analyte and (ii) by
of quantification. Additional parameters which comparison of the analytical method with a reference
might have to be evaluated include limit of detection method.[36]
of development. Additionally, it becomes necessary documented.[47-50] These important tests are collectively
to quantify active metabolite(s) in both animals and referred to as ADME characteristics (Absorption,
humans.[40] Distribution, Metabolism and Elimination).[26] Figure
2 shows an illustration of a possible scenario of
Drug discovery/design consists of identification and bioanalysis in discovering drugs which are active
characterization of new targets (enzymes or receptors), in vitro and improving these by modification of the
synthesis of new lead molecules, screening of new chemical structure optimized for in vivo activity.[51]
lead molecules for in vitro and/or in vivo biological
activities, and physicochemical characterization of
leads.[41] For discovery, the priority is to examine a
large number of compounds and determine which
pharmacologically active compounds are most
suitable for drug development. In practice, when
a compound is obtained which has the required
biological activity, a number of analogues or
chemically similar compounds will be synthesized
and tested to optimize the preferred characteristics of
the compound (a process known as lead optimization).
Using automated techniques, ultrahigh throughput
can be obtained by the most advanced laboratories and
tens of thousands of compounds can be screened in one
day. In the secondary screening stage, physiochemical
properties such as solubility, lipophilicity and stability
are determined by using octanol–water partition
coefficient and pKa. These measurements are useful
in predicting protein binding, tissue distribution
and absorption in gastrointestinal tract.[42] In parallel
studies, information is learned on a drug molecule’s
absorption, distribution (including an estimate of
protein binding), metabolism and elimination by
sampling from dosed laboratory animals (called in Figure 2: Showing possible scenario of bioanalysis in discovering drugs
vivo testing) and from working cells and/or tissues
removed from a living organism (called in vitro testing Table 2: List of experiments to assess ADME
since the cells are outside a living animal). For in Parameter examined Typical experiments
vivo characterization of PK and bioavailability, it is Absorption Caco-2 cells, MDCK cells, PgP transport
In vivo PK profiling
necessary to administer the drug to selected animal
Distribution In vitro protein binding
species both intravenously and by the intended
In vivo tissue distribution studies
route of administration (usually oral). Whole blood Metabolism Metabolic stability
samples are collected over a predetermined time Microsomes, subcellular fractions,
course after dosing, and the drug is quantified in the hepatocytes
harvested plasma by a suitable bioanalytical method. P450 inhibition studies
The use of in vitro drug metabolism approaches for Microsomes
the prediction of various in vivo PK characteristics is P450 induction studies
widely practiced in the pharmaceutical industry.[43-46] Gene chips, multiple dosing
Elimination Quantitation of drugs and metabolites in
In particular, in vitro metabolic stability assessment biological fluids
using hepatic subcellular fractions to predict in
vivo hepatic clearance is employed as part of the
initial screening of candidates in a lead optimization Table 3: Reasons for failure in drug development
program. This is because the liver is the main organ [57]
involved in the metabolism of xenobiotics, the process Reasons %
by which most drugs are cleared from the body. The Poor biopharmaceutical properties 40
correlation between in vivo hepatic clearance values Lack of efficacy 30
and the intrinsic clearance values determined from Toxicity 21
Commercial reasons 8
liver microsomal incubation experiments is also well
Table 4: Objectives of the four phases in clinical drug development and typical numbers of volunteers or
patients involved
Phase I Phase II Phase III Phase IV
Establish safe dosing range and Demonstrate efficacy, Gain data on safety and Expand on approved claims or
assess PK; also called first time in identify side effects and effectiveness in a larger demonstrate new claims; examine
man (FTIM) assess PK population of patients; assess PK special drug–drug interactions;
20–80 males 200–800 patients 1000–5000 patients assess PK
Volunteers Several A few thousand to thousand patients
Clinical stage
Clinical trials are used to judge the safety and efficacy
of new drug therapies in humans. Drug development
comprises of four clinical phases: Phase I, II, III and
IV [Table 4]. Each phase constitutes an important
juncture, or decision point, in the drug’s development
cycle. A drug can be terminated at any phase for any
valid reason. As the molecule advances into clinical
development, the developed assay for human sample
analyses (plasma, serum or urine matrix) needs to
be more rugged, robust and be able to withstand the
Figure 3 : Showing various steps of bioanalysis in the development test of time during this the longest phase of clinical
stage of drugs development.[71-79]
computer programs are usually used to do this (e.g., The requirements and adherence to specificity,
WinNonlin).[59-63] The parameters may be estimated selectivity and stability will become very important.
by compartmental or non-compartmental approaches Since it is likely that patients will be concomitantly
(or model-dependent and model-independent, ingesting other medications, the assay has to be
respectively). Figure 3 shows some possible steps flexible enough to accommodate minor alterations
of bioanalysis in the development stage of drugs. in chromatographic conditions to circumvent the
However, the determination of metabolite profiles interfering peaks, if necessary.
is usually performed for a limited number of lead
molecules in vivo and in vitro, and in these experiments Table 5 provides a framework of the various stages
the key issues are high specificity and sensitivity of bioanalytical assay development (discovery,
rather than speed.[64] preclinical and clinical), key objectives that assay
would support and some suggested validation
I n t h e p h a r m a c e u t i c a l i n d u s t r y, t h e t e r m workup that may be required to achieve the end goals.
“toxicokinetics” is generally used to describe the PK Based on the presentation [Table 1], it is apparent that
performed at the dose levels used in the toxicological assays developed in the early discovery stage may
risk assessment of drugs. The aims of the toxicokinetic find utility during the course of an NCE’s progress
evaluation are in development.
Origi
• to define nal
the Aritcle between systemic
relationship
exposure to test compound and the administered
dose, CONCLUSION
• to provide information on potential dose- and
time-dependencies in the kinetics, The need for sound bioanalytical methods is well
• to determine the effect of age on the PK in animals, understood and appreciated in the discovery phase
provide clearer delineation when there are sex- and during the preclinical and clinical stages of drug
related differences, determine whether there are development. Therefore, it is generally accepted
any changes in kinetics in pregnancy (during that sample preparation and method validation are
reproductive toxicology studies) and also provide required to demonstrate the performance of the
greater detail on interspecies comparisons. method and the reliability of the analytical results.
The acceptance criteria should be clearly established
However, the overall aim in conducting toxicokinetics in a validation plan, prior to the initiation of the
during safety studies is to extrapolate the risk validation study. The developed assay should be
assessment from the toxicity test species to humans. sufficiently rugged that it provides opportunities for
[51]
Whilst preliminary PK and toxicokinetic data are minor modifications and/or ease of adoptability to
suit other bioanalytical needs such as applicability to and validation for simultaneous determination of five model
compounds—antipyrine, metoprolol, ketoprofen, furesemide and
a drug–drug interaction study, toxicokinetic study as phenol red, as a tool for the standardization of rat insitu intestinal
well as for characterization of the plasma levels of the permeability studies using timed wavelength detection. Biomed
metabolites. For bioanalytical liquid chromatographic Chromatogr 2006;20:349-57.
15. Mercolini L, Mandrioli R, Finizio G, Boncompagni G, Raggi MA.
methods, sample preparation techniques, the essential
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