Kim 等。 - 2020 - Application of A Convolutional Neural Network in T
Kim 等。 - 2020 - Application of A Convolutional Neural Network in T
Clinical Medicine
Article
Application of a Convolutional Neural Network in
the Diagnosis of Gastric Mesenchymal Tumors on
Endoscopic Ultrasonography Images
Yoon Ho Kim 1 , Gwang Ha Kim 1, * , Kwang Baek Kim 2 , Moon Won Lee 1 , Bong Eun Lee 1 ,
Dong Hoon Baek 1 , Do Hoon Kim 3 and Jun Chul Park 4
1 Department of Internal Medicine, Pusan National University School of Medicine and Biomedical Research
Institute, Pusan National University Hospital, Busan 49241, Korea; [email protected] (Y.H.K.);
[email protected] (M.W.L.); [email protected] (B.E.L.); [email protected] (D.H.B.)
2 Division of Computer Software Engineering, Silla University, Busan 46958, Korea; [email protected]
3 Department of Gastroenterology, University of Ulsan College of Medicine, Asan Medical Center,
Seoul 05505, Korea; [email protected]
4 Department of Internal Medicine and Institute of Gastroenterology, Yonsei University College of Medicine,
Seoul 03722, Korea; [email protected]
* Correspondence: [email protected]; Tel.: +82-51-2407869; Fax: +82-51-2448180
Received: 4 August 2020; Accepted: 27 September 2020; Published: 29 September 2020
Abstract: Background and Aims: Endoscopic ultrasonography (EUS) is a useful diagnostic modality
for evaluating gastric mesenchymal tumors; however, differentiating gastrointestinal stromal
tumors (GISTs) from benign mesenchymal tumors such as leiomyomas and schwannomas remains
challenging. For this reason, we developed a convolutional neural network computer-aided diagnosis
(CNN-CAD) system that can analyze gastric mesenchymal tumors on EUS images. Methods: A total
of 905 EUS images of gastric mesenchymal tumors (pathologically confirmed GIST, leiomyoma,
and schwannoma) were used as a training dataset. Validation was performed using 212 EUS
images of gastric mesenchymal tumors. This test dataset was interpreted by three experienced
and three junior endoscopists. Results: The sensitivity, specificity, and accuracy of the CNN-CAD
system for differentiating GISTs from non-GIST tumors were 83.0%, 75.5%, and 79.2%, respectively.
Its diagnostic specificity and accuracy were significantly higher than those of two experienced
and one junior endoscopists. In the further sequential analysis to differentiate leiomyoma from
schwannoma in non-GIST tumors, the final diagnostic accuracy of the CNN-CAD system was
75.5%, which was significantly higher than that of two experienced and one junior endoscopists.
Conclusions: Our CNN-CAD system showed high accuracy in diagnosing gastric mesenchymal
tumors on EUS images. It may complement the current clinical practices in the EUS diagnosis of
gastric mesenchymal tumors.
1. Introduction
Mesenchymal tumors of the stomach are mostly incidentally observed during routine
esophagogastroduodenoscopy examinations, especially as part of the national gastric cancer screening
programs in Korea; they appear as hard, elevated subepithelial lesions [1]. The exact incidence of
gastric mesenchymal tumors is unknown, but the prevalence of subepithelial tumors detected during
routine esophagogastroduodenoscopy was 1.7% (194 of 11,712) in Korea [2]. Histopathologically,
most mesenchymal tumors are either entirely or partially made up of spindle cells and demonstrate
differentiation of the smooth muscles or nerve sheaths. Most gastric mesenchymal tumors are
gastrointestinal stromal tumors (GISTs), which originate from the interstitial cells of Cajal [3–5].
GISTs have a metastatic risk, especially to the liver and peritoneum, even after surgical resection
for localized disease [6,7]. Therefore, they have considerable malignant potential, and resection
is recommended, even when they present as small gastric subepithelial lesions but with possible
high-risk endosonographic features such as irregular border, cystic spaces, ulceration, echogenic foci,
and heterogeneity [7–10].
In clinical practice, it is important to differentiate GISTs from benign mesenchymal tumors such
as leiomyomas or schwannomas, to manage them appropriately. Endoscopic ultrasonography (EUS) is
currently the most useful diagnostic modality for evaluating gastric mesenchymal tumors because it
enables clinicians to assess the size, gastric wall layer of origin, margins, echogenicity, and detailed
morphology of the lesions [11–13]. However, the results of previous studies about differentiating GISTs
from benign mesenchymal tumors using EUS have not been consistent [13,14]. There are inevitable
limitations in analyzing the characteristic EUS findings of such mesenchymal tumors as a consequence
of the subjective interpretation of EUS images by the endoscopists, which finds its expression in poor
interobserver agreement [15,16]. Computer-aided diagnosis is expected to help endoscopists overcome
these limitations and improve the diagnosis of mesenchymal tumors. In previous studies we showed
that digital image analysis using brightness values of tumors in EUS images was useful in diagnosing
gastric mesenchymal tumors [1,17].
Recently, image interpretation using artificial intelligence (AI) with machine or deep learning has
improved dramatically, and is progressively applied to diverse gastrointestinal endoscopy fields [18,19].
Machine learning refers to the scientific study of algorithms and statistical models with which a
computer can learn on its own using multiple datasets, without being provided explicit instructions;
deep learning is a subfield of machine learning algorithms and uses layers of nonlinear processing for
feature extraction and transformation from unstructured or unlabeled data [19]. The convolutional
neural network (CNN), a deep learning algorithm, is a neural network currently considered to possess
the best performing image recognition algorithm [20,21]. Accordingly, deep learning via a CNN using
comprehensive image data holds a high potential for clinical application in analyzing medical images.
For this reason, we decided to investigate the values of CNN in the differentiation of GISTs from benign
mesenchymal tumors on EUS images. We assessed the performance of a novel sequential system based
on CNN that we had developed for analyzing gastric mesenchymal tumors observed during EUS.
2. Methods
Table 1. Clinicopathological characteristics of patients with gastric mesenchymal tumors in the training
and test datasets.
We then collated an independent test dataset of 212 EUS images of 69 gastric mesenchymal
tumors that had been recorded at the same institutions from July 2018 to June 2019 (106 images of
32 GISTs, 60 images of 23 leiomyomas, and 46 images of 14 schwannomas). All EUS findings had been
histopathologically confirmed as either GISTs, leiomyomas, or schwannomas by surgical or endoscopic
resection or EUS-FNB.
The protocol of this study was reviewed and approved by the Pusan National University Hospital
Institutional Review Board (IRB number, H-2002-026-088)
2.2. Histopathology
The tumors were immunohistochemically classified into leiomyomas, schwannomas, or GISTs,
as previously described [5,22]. GIST was defined as a c-kit (CD117), CD34, or DOG-1-positive tumor.
Leiomyoma was defined as a desmin-positive and c-kit-negative tumor, while schwannoma was
defined as an S-100-positive and c-kit-negative tumor. The mesenchymal tumors were then classified
into two groups according to their malignant potential: the GIST and non-GIST tumor (leiomyoma
and schwannoma) groups
3. Results
80.6% (95% CI: 77.2–83.4%), 82.1% (95% CI: 79.0–84.6%), 88.4% (95% CI: 84.7–91.4%),
and 85.0% (95% CI: 81.6–87.7%), respectively.
Figure 2. Receiver operating characteristic curve for the test dataset. The area under the curve is 83.4%.
Endoscopists
CNN-CAD
System Experienced Experienced Experienced Junior Junior Junior
1 2 3 1 2 3
83.0 83.0 74.5 71.7 84.0 73.6 84.9
Sensitivity, %
(77.4–87.5) (77.4–87.5) (68.3–79.9) (65.3–77.3) (78.4–88.3) (67.3–79.1) (79.5–89.1)
75.5 68.9 61.3 * 56.6 * 63.2 77.4 53.8 *
Specificity, %
(69.3–80.8) (62.3–74.7) (54.6–67.6) (49.9–63.1) (56.5–69.4) (71.3–82.5) (47.1–60.4)
77.2 72.7 65.8 62.3 * 69.5 76.5 64.7 *
Positive predictive value, %
(71.1–82.3) (66.4–78.3) (59.2–71.9) (55.6–68.5) (63.0–75.3) (70.3–81.7) (58.1–70.9)
81.6 80.2 70.7 66.7 * 79.8 74.5 78.1
Negative predictive value, %
(75.9–86.3) (74.3–85.0) (64.2–76.4) (60.1–72.7) (73.8–84.6) (68.3–79.9) (72.0–83.1)
79.2 75.9 67.9 * 64.2 * 73.6 75.5 69.3 *
Accuracy, %
(73.3–84.2) (69.8–81.2) (61.4–73.8) (57.5–70.3) (67.3–79.1) (69.3–80.8) (62.8–75.2)
Values in parenthesis are 95% confidence intervals. CNN-CAD, convolutional neural network computer-aided
detection. * Significant differences compared with the CNN-CAD system (p < 0.05).
J. Clin. Med. 2020, 9, 3162 7 of 11
We then performed a further sequential analysis of the 98 tumors classified as non-GIST tumors
with the CNN-CAD system to differentiate leiomyomas from schwannomas; 54 tumors were diagnosed
as leiomyomas and 44 as schwannomas (Figure 3). The final accuracy of our sequential CNN-CAD
system for gastric mesenchymal tumors was 75.5% (95% CI: 69.3–80.8%) (Table 3). It correctly diagnosed
88 (83.0%) of the 106 GISTs, 44 (73.2%) of the 60 leiomyomas, and 28 (60.9%) of the 46 schwannomas.
The diagnostic accuracy of the CNN-CAD system was significantly higher than that of two experienced
and one junior endoscopists (all p < 0.05).
Table 3. Overall diagnostic accuracy of gastric mesenchymal tumors by a convolutional neural network
computer-aided detection system compared to that of endoscopists.
Endoscopists
CNN-CAD
System Experienced Experienced Experienced Junior Junior Junior
1 2 3 1 2 3
75.5 72.6 61.8 * 59.0 * 67.0 68.4 66.0 *
Accuracy, %
(69.3–80.8) (66.3–78.2) (55.1–68.1) (52.2–65.4) (60.4–73.0) (61.9–74.3) (59.4–72.1)
Values in parenthesis are 95% confidence intervals. CNN-CAD, convolutional neural network computer-aided
detection. * Significant differences compared with CNN-CAD system (p < 0.05).
4. Discussion
In this study, we present the results of a newly developed AI-based diagnostic system in
differentiating GISTs from benign mesenchymal tumors on EUS images using a CNN that simulates
the human brain. Our CNN-CAD system differentiated GISTs from non-GIST tumors with a sensitivity
of 83.0% and a specificity of 75.5% in the independent test dataset. Furthermore, the sequential
CNN-CAD system could predict the histopathology of gastric mesenchymal tumors with an accuracy
rate of 75.5%. To the best of our knowledge, this is the first study to report on the use of a CNN-CAD
system to differentiate gastric mesenchymal tumors on EUS images.
In our previous studies, we reported on the characteristic EUS features of GISTs, leiomyomas,
and schwannomas [13,26]. Heterogeneity, hyperechogenic spots, a peripheral halo, and higher
echogenicity when compared with those in the normal proper muscle layer were the useful criteria in
differentiating GISTs from other mesenchymal tumors. However, the interpretation of EUS findings is
subjective and depends on the endoscopists.
Our CNN-CAD system analyzed gastric mesenchymal tumors sequentially based on a CNN;
the first step was to classify the gastric mesenchymal tumors into GISTs and non-GIST tumors and then
J. Clin. Med. 2020, 9, 3162 8 of 11
to sub-classify non-GIST tumors into leiomyomas and schwannomas. In the first step, our results
showed that the specificity and accuracy of the CNN-CAD system were better than those of two
experienced and one junior endoscopists, while there was no significant difference in the sensitivity
between the CNN-CAD system and all of the endoscopists. In the second step, the testing results
showed that the accuracy of the CNN-CAD system was also better than that of two experienced
and one junior endoscopists. Hence, the CNN-CAD system performed similarly or better in detecting
the specific EUS features of mesenchymal tumors than the endoscopists, and has the potential to
provide diagnostic assistance to endoscopists in the future.
The diagnostic capability of two of the experienced endoscopists was not as good as that of
the junior endoscopists in our study. Paradoxically, an extensive period of training and practice to
become skilled and proficient in the clinical application of EUS does not seem to facilitate the diagnosis
of gastric mesenchymal tumors. Therefore, more invasive procedures for tissue acquisition, such as
EUS-FNB and submucosal dissection-assisted deep biopsy, are sometimes recommended in clinical
settings to evaluate the malignant potential of gastric mesenchymal tumors [1]. This is another reason
for the introduction of a CNN-CAD system: a further CNN-CAD may help to reduce diagnostic errors
made by endoscopists and lead to the development of optimal treatment plans.
The problem that remains is the application of this CNN-CAD system in making real-world clinical
decisions in gastric mesenchymal tumors. Recent guidelines recommend follow-up using endoscopy
or EUS once or twice a year for gastric mesenchymal tumors that are <2 cm in size without high-risk
EUS features until they are symptomatic or grow in size [10,27,28]. In contrast, surgical resection is
recommended for gastric mesenchymal tumors >5 cm in size. However, for gastric mesenchymal tumors
of 2–5 cm in size, invasive procedures such as EUS-guided or endoscopic submucosal dissection-assisted
biopsy are generally recommended to obtain histopathological confirmation and differentiate GISTs
from non-GIST tumors. In real-world practice, the management of gastric mesenchymal tumors of
2–5 cm in size can be problematic to both endoscopists and patients. We believe that the CNN-CAD
system could be useful in such cases in choosing the next diagnostic or treatment modality (Figure 4).
Figure 4. A suggested strategy based on the convolutional neural network computer-aided diagnosis
system for gastric mesenchymal tumors of 2–5 cm in size. CNN-CAD, convolutional neural network
computer-aided detection; EUS, endoscopic ultrasonography; GIST, gastrointestinal mesenchymal
tumor. *EUS-guided or submucosal dissection-assisted biopsy.
J. Clin. Med. 2020, 9, 3162 9 of 11
This study has several limitations. First, the training dataset and test dataset images were
relatively small in number, and all EUS images were still images retrospectively obtained from only
three centers. The results of retrospective studies tend to be better than what can be achieved in
real-life settings because of selection bias. The types of echoendoscopes and ultrasound processors
are highly variable across different facilities. Furthermore, we used only high-quality EUS images
for the training and test datasets. If the images are blurred or show a lack of focus, the CNN-CAD
system is likely to make mistakes—although the same has been observed with endoscopists [29].
Therefore, we think that the ability of the CNN-CAD system to evaluate poor-quality EUS images
should be investigated after its performance has been confirmed in large numbers of high-quality
images. Lastly, we analyzed the diagnostic performance of the CNN-CAD system in each EUS image,
not in each lesion. In addition, the proportion of GISTs in the test dataset was lower than that in
the training dataset (69.8% vs. 46.4%). These factors would have influenced the diagnostic performance
of the CNN-CAD system and endoscopists.
Despite these limitations, our results are valuable in that the CNN-CAD system can differentiate
GISTs from non-GIST tumors within a short amount of time and with high sensitivity and specificity.
We currently plan to conduct a large-scale, multi-center prospective study to validate the diagnostic
ability of the CNN-CAD system to predict the histopathology of gastric mesenchymal tumors.
In conclusion, we developed a CNN-CAD system for diagnosing gastric mesenchymal tumors with
high accuracy and specificity. It distinguished GISTs from non-GIST tumors, which may complement
current clinical practice in the EUS diagnosis of gastric mesenchymal tumors.
Author Contributions: Conceptualization, G.H.K. and K.B.K.; Methodology, Y.H.K., G.H.K., and K.B.K.; Software,
Y.H.K. and K.B.K; Formal Analysis, M.W.L., B.E.L., and D.H.B.; Investigation, M.W.L., B.E.L., D.H.B., D.H.K.,
and J.C.P.; Resources, G.H.K., D.H.K., and J.C.P.; Data Curation, Y.H.K. and G.H.K.; Writing—Original Draft
Preparation, Y.H.K. and G.H.K.; Writing—Review—Editing, Y.H.K., G.H.K., K.B.K., M.W.L., B.E.L., D.H.B.,
D.H.K., and J.C.P. Supervision, G.H.K. and K.B.K. All authors have read and agreed to the published version of
the manuscript.
Funding: This research received no external funding.
Acknowledgments: We thank Hee Kyong Na (University of Ulsan) and Da Hyun Jung (Yonsei University)
for acting as junior endoscopists. We also thank Department of Biostatistics, Biomedical Research Institute,
Pusan National University Hospital for statistical analysis.
Conflicts of Interest: The authors declare no conflict of interest.
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