Savile 2010
Savile 2010
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REPORTS
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are gratefully acknowledged. This work was funded by the
Consequently, the lateral interaction between the References and Notes German Bundesministerium für Bildung und Forschung
molecules gains more weight and induces the 1. N. Schupper, N. M. Shnerb, Phys. Rev. E Stat. Nonlin. Soft (contracts 05 KS1WWA-5 and 05 KS7WE1) and by the
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At low temperature, the structural reorganiza-
Fig. 4. Structural models of variants from sequential stages of the evolution mapped on the monomer with the active site of the enzyme exposed and
program. Accumulated mutations are highlighted in purple on the homology substrate bound. The bottom row shows the mutations mapped on the dimer.
model of the transaminase used in this study (size exclusion chromatography The active site, the subunit interface, and a few exposed surface areas can be
data show that the enzyme forms a dimer). The top row shows the mutations identified as structural hot spots for mutations.
productivity (kg/l per day), a 19% reduction in by making substantial progress toward a general 11. M. D. Truppo, N. J. Turner, J. D. Rozzell, Chem. Commun.
total waste, the elimination of all heavy metals, approach for the safe, efficient, environmental- 2009, 2127 (2009).
12. D. Koszelewski, D. Clay, D. Rozzell, W. Kroutil, Eur. J. Org.
and a reduction in total manufacturing cost; the ly friendly production of chiral primary amines. Chem. 2009, 2289 (2009).
enzymatic reaction is run in multipurpose vessels, The manufacture of chiral alcohols is already 13. D. Koszelewski et al., Angew. Chem. Int. Ed. 47, 9337
avoiding the need for specialized high-pressure often accomplished with biocatalysts (30–32); (2008).
hydrogenation equipment. chiral amine synthesis via the enzymatic platform 14. D. Koszelewski, I. Lavandera, D. Clay, D. Rozzell,
W. Kroutil, Adv. Synth. Catal. 350, 2761 (2008).
The enzymes developed for sitagliptin syn- described here is expected to reach a similar level 15. The complete amino acid sequence of ATA-117 is as
thesis have a broad substrate range and increased of broad utility and robustness. This development follows: MAFSADTSEIVYTHDTGLDYITYSDYELDPANPLAGGAA-
tolerance to high concentrations of i-PrNH2 and will serve as a model for the implementation of WIEGAFVPPSEARISIFDQGYLHSDVTYTVFHVWNGNAFRLD-
organic solvent that enhances their practical util- other biocatalytic manufacturing processes in DHIERLFSNAESMRIIPPLTQDEVKEIALELVAKTELREAFVSVSITR-
GYSSTPGERDITKHRPQVYMYAVPYQWIVPFDRIRDGVHAM-
ity. For instance, various trifluoromethyl-substituted which enzymes can be evolved to meet desired VAQSVRRTPRSSIDPQVKNFQWGDLIRAVQETHDRG-
amines as well as phenylethylamines with electron- chiral process targets. FEAPLLLDGDGLLAEGSGFNVVVIKDGVVRSPGRAALPGITRKTV-
rich substituents (Fig. 5 and fig. S6), which cannot LEIAESLGHEAILADITLAELLDADEVLGCTTAGGVWPFVSVDGN-
be generated via traditional reductive amination, PISDGVPGPVTQSIIRRYWELNVESSSLLTPVQY.
References and Notes
were prepared with near-perfect stereopurity. The 1. N. B. Johnson, I. C. Lennon, P. H. Moran, J. A. Ramsden, 16. A. Iwasaki, Y. Yamada, N. Kizaki, Y. Ikenaka, J. Hasegawa,
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2. D. M. Kendall, R. M. Cuddihy, R. M. Bergenstal,
access to chiral pyrrolidines. As such, these en- Eur. J. Intern. Med. 20 (suppl.), S329 (2009). material on Science Online.
zymes provide a general approach for the practical 3. D. Williams-Herman et al., BMC Endocr. Disord. 8, 14 18. Z. Chen, H. Zhao, J. Mol. Biol. 348, 1273 (2005).
synthesis of chiral amines from prochiral ketones, (2008). 19. Single-letter abbreviations for the amino acid residues
4. K. B. Hansen et al., J. Am. Chem. Soc. 131, 8798 (2009). are as follows: A, Ala; C, Cys; D, Asp; E, Glu; F, Phe; G, Gly;
which is of general interest in pharmaceutical H, His; I, Ile; K, Lys; L, Leu; M, Met; N, Asn; P, Pro;
manufacturing (29). 5. a-Transaminases are pyridoxal 5′-phosphate
(PLP)-dependent enzymes widespread in nature for Q, Gln; R, Arg; S, Ser; T, Thr; V, Val; W, Trp; and Y, Tyr.
Although naturally occurring enzymes rarely the synthesis of a-amino acids from the corresponding 20. G. W. Huisman, J. J. Lalonde, in Biocatalysis in the
offer ideal manufacturing catalysts, directed evo- a-keto acids; comparatively few w-transaminases, for Pharmaceutical and Biotechnology Industries,
R. N. Patel, Ed. (CRC, Boca Raton, FL, 2006),
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to carboxylic acid functionalities, are known. pp. 717–742.
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bining modeling with directed evolution offers a Amino Acids and Derivatives, J. D. Rozzell, F. Wagner, 22. R. J. Fox et al., Nat. Biotechnol. 25, 338 (2007).
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operate under the demanding conditions required 7. J.-S. Shin, B.-G. Kim, J. Org. Chem. 67, 2848 (2002). Sci. U.S.A. 94, 4504 (1997).
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for the manufacture of pharmaceuticals. In ad-
9. M. Höhne, S. Kühl, K. Robins, U. T. Bornscheuer, 25. J. Liao et al., BMC Biotechnol. 7, 16 (2007).
dition, we have removed the intrinsic limitation ChemBioChem 9, 363 (2008). 26. See “quantitation of catalyst improvement,” figs. S1 and
that transaminases accept only a methyl substi- 10. M. D. Truppo, J. D. Rozzell, J. C. Moore, N. J. Turner, S2, and tables S10 and S11 in supporting online material
tuent adjacent to the carbonyl functionality, there- Org. Biomol. Chem. 7, 395 (2009). (SOM) on Science Online.
1 O O
Department of Biochemistry, University of Washington,
Seattle, WA 98195, USA. 2Biomolecular Structure and Design N O N O NH N
Program, University of Washington, Seattle, WA 98195, USA. H Acceptor H N
3 Donor
Department of Chemistry, University of Washington, Seattle, O O O
WA 98195, USA. 4Department of Chemistry and Biochemistry, 2 O O
University of California, Los Angeles, CA 90095, USA. 5Division N
of Basic Sciences, Fred Hutchinson Cancer Research Center,
Seattle, WA 98109, USA. 6Laboratory of Organic Chemistry,
Eidgenössische Technische Hochschule (ETH) Zürich, 8093 CO 2 -
-
O2 C CO 2 H
Zürich, Switzerland. 7Howard Hughes Medical Institute (HHMI),
University of Washington, Seattle, WA 98195, USA. 1 3 4
*These authors contributed equally to this work.
Fig. 1. The Diels-Alder reaction. Diene (1) and dienophile (2) undergo a pericyclic [4 + 2] cycloaddition (3)
†Present address: Arzeda Corporation, 2722 Eastlake Avenue
East, Suite 150, Seattle, WA 98102, USA. to form a chiral cyclohexene ring (4). Also shown in (3) is a schematic of the design target active site, with
‡To whom correspondence should be addressed. E-mail: hydrogen bond acceptor and donor groups activating the diene and dienophile and a complementary
[email protected] binding pocket holding the two substrates in an orientation optimal for catalysis.