Bot Unit III Plant Physiology Notes
Bot Unit III Plant Physiology Notes
Plants absorb minerals from the soil in the form of inorganic ions. Earlier it was thought that the
absorption of minerals takes place in plants along with the absorption of water. In fact, the process of
mineral absorption and water absorption are two separate processes. In order to absorb any minerals from
the soil, it should be dissolved in the water.
Plants absorb most of the minerals through the roots. The large surface area of roots and its ability to
absorb minerals from the soil even in minor concentration makes the roots more efficient in mineral
absorption than any other organs. In roots, the mineral absorption usually takes place through the
meristematic region of the root tip.
There are two types of mineral absorptions based on the involvement of metabolic energy. They are (1)
Passive minerals absorption (2) Active minerals absorption.
The exact mechanisms by which the plants absorb mineral from the soil vary greatly for various types of
minerals. There are three main mechanisms of mineral absorption processes in plants.
(1). Ion-Exchange
(2).Carrier Concept
(3). Donnan’s Equilibrium
(b). Carbonic Acid Exchange Theory: According to carbonic acid exchange theory, the CO produced in the
root cells due to respiration combine with water to form carbonic acid (H CO ). The carbonic acid is
immediately dissociated into H and HCO ions. The H ions thus formed are exchanged with cations on the
clay particles.
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Photosynthesis
Green plants are also called producers. This is because they have the ability to produce their own food
from the raw materials around them by a process called photosynthesis.
During photosynthesis radiant energy from the sun (sunlight) is absorbed by green plants. The energy is
used to convert carbon dioxide, water and minerals the plants take in from their surroundings into sugar
and gaseous oxygen.
Photosynthesis is critical to life on Earth. Without photosynthesis the food supply would finish and the
Earth’s atmosphere would lose its oxygen.
Photosynthesis Reaction
The photosynthesis equation is a simple representation for a very complex natural process. Within the
photosynthesis process there are two distinctly separate stages, a photochemical stage followed by a
biochemical stage.
The photochemical stage involves the radiant energy supplied by sunlight and involves reactions called
light dependant reactions. Green plants contain a light absorbing pigment called chlorophyll. When a
molecule of chlorophyll absorbs light it uses the energy to boost electrons to a higher energy level and the
molecule is said to be excited. The electrons at the higher energy levels are transferred along chains of
electron carrier molecules. The energy transfers of the electrons are responsible for the formation of key
energy carrying molecules along with the splitting of the water molecule to oxygen and hydrogen.
These molecules then undergo the second stage of photosynthesis, the biochemical reaction. Here they
react with hydrogen formed from the splitting of water in the photochemical stage and carbon dioxide
from the atmosphere with the presence of enzymes to form the organic glucose molecules. The reactions
in this stage are referred to as light‐independent reactions because they do not require light as they use
the energy already provided by the light in the light‐dependent reactions. Thus, photosynthesis has
transferred the energy from light to chemical energy in the sugar.
Mechanism of photosynthesis involves two distinct phases of reactions, viz. Primary photochemical
reaction or light reaction and dark reaction or blackman's reaction or Calvin cycle.
The phase of reactions in photosynthesis which involves the direct sunlight is called light reaction. This
reaction takes place inside the grana of chloroplast. In this reaction assimilatory power ATP and NADPH2
are generated with evolution of oxygen and photolysis of water. These assimilatory powers help in the
fixation of carbon dioxide during dark phase of reaction.
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Light reaction involves following steps:
Light energy absorbed by the pigment other than chlorophyll a transferred to chlorophyll ‐a by resonance
of photons. In the chlorophyll‐a primary photochemical reaction takes place.There are two pigment
systems in the chlorophyll with p‐690 and p‐700.
When pigment system II is active it receive light, the water molecule split into OH and H+ ions in presence
of Mn++ and CL‐ ions. The OH ions unite form some water molecules again and O2 and electron are
released.
(5) Electron transport and the production of assimilatory
Excited electrons from the pigment system travels through a number of electron carriers reducing the
NAND to NADPH2. The extra energy which carried along with electrons utilized in phoshorylation of ADP to
form ATP. This above process is called electron transport or photophosphorylation.
There are two distinct paths of electron transport involves in light reaction.
i. Noncyclic Photosphosphorylation:
According to Arnon, the electron which ejected from pigment system ‐1 after photo excitation causes an
electron hole in the p700 molecule. This ejected electron is trapped by FRS (Ferredoxin reducing substance
which is an unknown oxidation reduction system with a redox notential E of 0.6 volts. The electron then
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transferred to a non heme iron protein called ferrodoxin (FD) with E, 0 of 0.432 volt. From gerredoxin
electron transferred to NADP, so that NAND is reduced to NANDPH.
When a photon of light absorbed by P690 form of chlorophyll a molecule in pigment system II, it gets
excited and release electron. This ejected electron trapped by plastoquinone from where the electron
follow down hill direction towards the pigment system 1, through a series of electron carriers or
cytochrome systems and plastocyanin (PQ). The election while pass from Cyt‐b to Cyt‐f phosphorylation of
ADP takes place as shown in above diagram.
a. Besides non‐cycles electron transport there may be transport of electrons takes place in light
reaction in cyclic way. It involves only pigment system 1.
b. This is rarely happen when the pigment system‐II is totally impaired or blocked by inhibitors like i‐
dimethy urea, or 3‐4 dichloro phynyl etc.
c. There is no need of photolysis of water.
d. When p700 molecule is excited in pigment system I by absorbing a photon of light the ejected
electron is captured by ferredoxin.
e. The electron then instead of reducing NADP fals back to p700 molecule involving electron pass from
F.R.S to P.C. there is phosphpry lation takes place in previous manner; so that ATP molecule is
generated.
f. Thus light reaction is fully dependant on the radiant energy in terms of photon by which radian‐
energy from sun transformed into assimilatory powers NADPH2 and ATP which are utilised in the
dark phase of reaction in order to fix CO2 forming sugar.
Dark reaction or Blackman’s reaction or Path of carbon in photosynthesis This is the second step in the
mechanism of photosynthesis. The chemical processes of photosynthesis occurring independent of light is
called dark reaction. It takes place in the stroma of chloroplast.
The dark reaction is purely enzymatic and it is slower than the light reaction. The dark reactions occur also
in the presence of light. In dark reaction, the sugars are synthesized from CO2. The energy poor CO2 is
fixed to energy rich carbohydrates using the energy rich compound, ATP and the assimilatory power,
NADPH2 of light reaction. The process is called carbon fixation or carbon assimilation.
Since Blackman demonstrated the existence of dark reaction, the reaction is also called as Blackman’s
reaction. In dark reaction two types of cyclic reactions occur
1. Calvin cycle or C3 cycle
2. Hatch and Slack pathway or C4 cycle
Ribulose‐1,5‐bisphosphate acts as the carbon dioxide acceptor; following carbon dioxide addition, the
resulting six‐carbon compound is cleaved into two three‐carbon 3‐phosphoglycerate molecules. The 3‐
phosphoglycerate is then converted to glyceraldehyde‐3‐phosphate using energy obtained from the light
reactions of photosynthesis.
The glyceraldehyde‐3‐phosphate has several possible fates; however, the continuation of the carbon
fixation process requires regenerating the ribulose‐1,5‐bisphosphate starting material. The cycle thus has
three phases: carbon fixation, glyceraldehyde‐3‐phosphate formation and ribulose‐1,5‐ bisphosphate
regeneration.
Rubisco The rate‐limiting enzyme in the Calvin cycle is ribulose 1,5‐bisphosphate carboxylase/oxygenase
(better known as rubisco). In most plants, rubisco is a complex of 8 large (53 kDa) and 8 small (14 kDa)
subunits (88). The large subunit is coded by a chloroplast gene, while the small subunit gene is located in
the nucleus. In photosynthetic bacteria, rubisco is usually a dimer of proteins homologous to the plant
large subunit.
The rubisco reaction thus yields two triose phosphate molecules from the single pentose bisphosphate.
Note that ATP is not required for the rubisco reaction, a property that differs from most other carboxylase
reac ons; in this case, the reac on has a large nega ve G° because of the release of the two triose
phosphates.
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C4 cycle or Hatch and Slack pathway
It is the alternate pathway of C3 cycle to fix CO2. In this cycle, the first formed stable compound is a 4
carbon compound viz., oxaloacetic acid. Hence it is called C4 cycle. The path way is also called as Hatch and
Slack as they worked out the pathway in 1966 and it is also called as C4 dicarboxylic acid pathway. This
pathway is commonly seen in many grasses, sugar cane, maize, sorghum and amaranthus.
The C4 plants show a different type of leaf anatomy. The chloroplasts are dimorphic in nature. In the leaves
of these plants, the vascular bundles are surrounded by bundle sheath of larger parenchymatous cells.
These bundle sheath cells have chloroplasts. These chloroplasts of bundle sheath are larger, lack grana and
contain starch grains. The chloroplasts in mesophyll cells are smaller and always contain grana. This
peculiar anatomy of leaves of C4 plants is called Kranz anatomy. The bundle sheath cells are bigger and
look like a ring or wreath. Kranz in German means wreath and hence it is called Kranz anatomy.
The C4 cycle involves two carboxylation reactions, one taking place in chloroplasts of mesophyll cells and
another in chloroplasts of bundle sheath cells. There are four steps in Hatch and Slack cycle:
1. Carboxylation
2. Breakdown
Crassulacean Acid Metabolism (CAM) cycle or the dark fixation of CO2 in succulents
CAM is a cyclic reaction occurring in the dark phase of photosynthesis in the plants of Crassulaceae. It is a
CO2 fixation process wherein, the first product is malic acid. It is the third alternate pathway of Calvin
cycle, occurring in mesophyll cells. The plants exhibiting CAM cycle are called CAM plants. Most of the CAM
plants are succulents e.g., Bryophyllum, Kalanchoe, Crassula, Sedium, Kleinia etc. It is also seen in certain
plants of Cactus e.g. Opuntia, Orchid and Pine apple families.
CAM plants are usually succulents and they grow under extremely xeric conditions. In these plants, the
leaves are succulent or fleshy. The mesophyll cells have larger number of chloroplasts and the vascular
bundles are not surrounded by well defined bundle sheath cells. In these plants, the stomata remain open
during night and closed during day time. The CAM plants are adapted to photosynthesis and survival under
adverse xeric conditions. CAM plants are not as efficient as C4 plants in photosynthesis. But they are better
suited to conditions of extreme desiccation. CAM involves two steps: 1. Acidification 2. Deacidification
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Comparison of the plants of C3 and C4 cycle
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Biological Nitrogen Fixation
The conversion of atmospheric nitrogen into the nitrogenous compounds through the agency of living
organisms is called biological nitrogen fixation. The process is carried out by two main types of
microorganism: those which live in close symbiotic association with other plants and those which are “free
living” or non‐symbiotic.
Biological nitrogen fixation (BNF) is the process whereby atmospheric nitrogen is reduced to ammonia in
the presence of nitrogenize. Nitrogenize is a biological catalyst found naturally only in certain
microorganisms such as the symbiotic Rhizobium and Frankia, or the free‐living Azospirillum and
Azotobacter and BGA.
Nearly 80% of Earths atmosphere contains nitrogen in the form of a highly inert di‐nitrogen (N = N) which
most plants cannot utilize as such. The atmospheric di‐nitrogen (N2) consists of two nitrogen atoms linked
by a triple‐covalent bond. About 225 kcal of energy is required to break this triple bond which is difficult to
achieve.
The phenomenon of reduction of inert gaseous di‐nitrogen (N2) into ammonia (NH3) through the agency of
some microorganisms so that it can be made available to the plants is called as biological nitrogen fixation
or diazotrophy.
Nitrogen Fixers:
Among the earth’s organisms, only some prokaryotes like bacteria and cyanobacteria can fix atmosphere
nitrogen. They are called nitrogen fixers or diazotrophs. They fix about 95% of the total global nitrogen
fixed annually (‐200 million matric tones) by natural process.Diazotrophs may be asymbiotic (free living) or
symbiotic such as given below:
It involves multiple interactions between free‐living soil Rizobium and roots of the host plant. The
important stages involved in nodule formation are as follows‐Host Specificity. The roots of young
leguminous plants secrete a group of chemical attractants like flavonoids and betaines. In response to
these chemical attractants specific rhizobial Tells migrate towards the root hairs and produce nod
(nodulation) factors. The nod factors found on bacterial surface bind to the lectin proteins present on the
surface of root hairs.
At these regions wall degrades in response to node‐factors and Rhizobia enter the root hair invagination of
plasma membrane called infection thread. The infection thread filled with dividing Rhizobia elongate
through the root hair and later branched to reach different cortical cells.
The Rhizobia are released into the cortical cells either single or in groups enclosed by a membrane. The
Rhizobia stop dividing, loose cell wall and become nitrogen fixing cells as led bacteroids .The membrane
surrounding the bacteroids is called peribacteroid membrane. The infected cortical cells divide to form
nodule.
The nodule serves as site for N2 fixation. It contains all the necessary bio‐chemicals such as the enzyme
complex called nitrogenase and leghaemoglobin (leguminous haemoglobin). The nitrogenase has 2
components i.e. Mo‐Fe protein (molybdoferredoxin) and Fe‐protein (azoferredoxin).The nitrogenase
catalyzes the conversion of atmosphere di‐nitrogen (N2) to 2NH3. The ammonia is the first stable product
of nitrogen fixation.
During nitrogen fixation, the free di-nitrogen first bound to MoFe protein and is not
released until completely reduced to ammonia. The reduction of di-nitrogen is a
stepwise reaction in which many intermediates are formed to form ammonia (NH3)
which is protonated at physiological pH to form NH4+.
Assimilation of Ammonia:
The ammonia produced by nitrogenase is immediately protonated to form ammonium ion (NH4+). As
NH4+ is toxic to plants, it is rapidly used near the site of generation to synthesize amino acids. Amino acids
synthesis takes place by three methods:
reductive animation,
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catalytic amination and
transamination.
(iii) Transamination:
Glutamate or glutamic acid is the main amino acid from which other amino acids are derived through
transamination. The enzyme aminotransferases (= transaminases) catalyze all such reactions.
Transamination involves transfer of amino group from one amino acid to the keto group of keto acid.
Glutamate (amino donor) + Oxaloacetate (amino acceptor) → Aspartate (amino acid) + 2 oxyglutarate
Nitrate Assimilation:
Nitrate cannot be utilized by plants as such. It is first reduced to ammonia before being incorporated into
organic compounds. Reduction of nitrate occurs in two steps:
2. Reduction of nitrate:
It is carried out by the enzyme nitrite reductase. The enzyme is a metalloflavoprotein which contains
copper and iron. It occurs inside chloroplast in leaf cells and leucoplast of other cells. Nitrite reductase
require reducing power. It is NADPH and NADH.
Reduction process also require ferredoxin which occurs in green tissues of higher plants. It is presumed
that in higher plants either nitrite is trans‐located to leaf cells or some other electron donor (like FAD)
operates in un‐illuminated cells. The product of nitrite reduction in ammonia.
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PLANT HORMONES
Plant hormones or Phytohormones may be defined as an "an organic substance produced naturally in
plants which control growth and other physiological functions at a site away from its place of synthesis".
Thimann (1948) proposed the term phytohormones. As these hormones are synthesis by plants, they are
also called phytohormones.
Phytohormones are active in small concentrations. They are capable of influencing physiological activities
leading promotion, inhibition and modification of growth. These growth regulatory substances are
generally grouped under five major classes, namely Auxins, gibbellins, cytokinins, ethylene and abscisic
acid.
Auxins
An auxin, indole‐3‐acetic acid (IAA), was the first plant hormone identified. It is manufactured primarily in
the shoot tips (in leaf primordia and young leaves), in embryos, and in parts of developing flowers and
seeds. Its transport from cell to cell through the parenchyma surrounding the vascular tissues requires the
expenditure of ATP energy. IAA moves in one direction only—that is, the movement is polar and, in this
case, downward. Such downward movement in shoots is said to be basipetal movement, and in roots it
is acropetal.
Auxins alone or in combination with other hormones are responsible for many aspects of plant growth. IAA
in particular:
Activates the differentiation of vascular tissue in the shoot apex and in calluses; initiates division of the
vascular cambium in the spring; promotes growth of vascular tissue in healing of wounds.
Activates cellular elongation by increasing the plasticity of the cell wall.
Maintains apical dominance indirectly by stimulating the production of ethylene, which directly
inhibits lateral bud growth.
Activates a gene required for making a protein necessary for growth and other genes for the synthesis
of wall materials made and secreted by dictyosomes.
Promotes initiation and growth of adventitious roots in cuttings.
Promotes the growth of many fruits (from auxin produced by the developing seeds).
Suppresses the abscission (separation from the plant) of fruits and leaves (lowered production of
auxin in the leaf is correlated with formation of the abscission layer).
Inhibits most flowering (but promotes flowering of pineapples).
Activates tropic responses.
Controls aging and senescence, dormancy of seeds.
Synthetic auxins are extensively used as herbicides, the most widely known being 2,4‐D and the
notorious 2,4,5‐T, which were used in a 1:1 combination as Agent Orange during the Vietnam War and
sprayed over the Vietnam forests as a defoliant.
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Cytokinins
Named because of their discovered role in cell division (cytokinesis), the cytokinins have a molecular
structure similar to adenine. Naturally occurring zeatin, isolated first from corn ( Zea mays), is the most
active of the cytokinins. Cytokinins are found in sites of active cell division in plants—for example, in root
tips, seeds, fruits, and leaves.
They are transported in the xylem and work in the presence of auxin to promote cell division. Differing
cytokinin:auxin ratios change the nature of organogenesis. If kinetin is high and auxin low, shoots are
formed; if kinetin is low and auxin high, roots are formed. Lateral bud development, which is retarded by
auxin, is promoted by cytokinins.
Cytokinins also delay the senescence of leaves and promote the expansion of cotyledons.
Gibberellins
The gibberellins are widespread throughout the plant kingdom, and more than 75 have been isolated, to
date. Rather than giving each a specific name, the compounds are numbered—for example, GA1, GA2, and
so on. Gibberellic acid three (GA3) is the most widespread and most thoroughly studied.
The gibberellins are especially abundant in seeds and young shoots where they control stem elongation by
stimulating both cell division and elongation (auxin stimulates only cell elongation).
The gibberellins are carried by the xylem and phloem. Numerous effects have been cataloged that involve
about 15 or fewer of the gibberellic acids. The greater number with no known effects apparently are
precursors to the active ones.
Experimentation with GA3 sprayed on genetically dwarf plants stimulates elongation of the dwarf plants to
normal heights. Normal‐height plants sprayed with GA3 become giants.
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