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Adaptationism and Optimality
General Editor
Michael Ruse Florida State University
Advisory Board
Michael Donoghue Yale University
Jean Gayon University of Paris
Jonathan Hodge University of Leeds
Jane Maienschein Arizona State University
Jesús Mosterín Instituto de Filosofía (Spanish Research Council)
Elliott Sober University of Wisconsin
Edited by
A catalog record for this book is available from the British Library.
Contributors page xi
Acknowledgments xv
ix
Contents
Index 389
x
Contributors
xi
Contributors
xii
Contributors
xiii
Contributors
xiv
Acknowledgments
xv
Introduction
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Introduction
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Introduction
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Introduction
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8
Introduction
nation of the state of the trait. (We remind the reader that any math-
ematically based optimality model can generate quantitative pre-
dictions.) As described later, many tests of optimality models have
been only qualitative at best. But qualitative fit without quantitative
fit means that the model is incomplete or its structure is incorrect
in some regard. Either possibility in regard to an optimality model
makes a claim of optimality inappropriate.
The importance of assessing quantitative fit in the context of
testing adaptationism heightens the importance of standardization
of protocols and of statistical power analyses when optimality models
are tested. After all, a small sample size by itself can result in quan-
titative agreement between predictions and observations or in the
appearance of trait homogeneity. The result would be a bias toward
the acceptance of trait optimality and, thereby, of the thesis of adap-
tationism. There is no single way to deal with this problem. At least
initially, we encourage investigators to assess the extent to which
support for a claim of optimality may result from a lack of statistical
power. As analyses accumulate, sample-size standards will develop
that investigators can use when designing experiments.
Although there are hundreds of tests of optimality models in the lit-
erature and the bearing of between-individual variation and of quan-
titative testing on the question of optimality may seem obvious, we can
find only two sets of studies in which data and analyses are currently
structured so as to allow one to assess local optimality. These two sets
constitute the ensemble test of adaptationism at present.
The first set of studies focuses on the mixture of two reproductive
behaviors in the digger wasp Sphex ichneumoneus (see Brockmann and
Dawkins 1979; Brockmann et al. 1979). The authors’ optimality model
accurately predicts the observed mixture of behaviors for a popula-
tion in New Hampshire; by comparing lifetime behavioral records of
individuals, one can also demonstrate that individuals do not differ
significantly in the mix of behaviors each produces. We conclude
from the present combination of data and theory that the mixture of
reproductive behaviors in this population is locally optimal. The
authors’ model cannot be reconciled with the data from a popu-
lation in Michigan. The analysis of the New Hampshire data serves
as a reminder that optimality models can make predictions that
quantitatively match data. General claims that optimality models
cannot be accurate in this way are simply incorrect.
9
steven orzack and elliott sober
The second set of studies focuses on sex ratio behaviors in the para-
sitoid wasp Nasonia vitripennis (see Orzack and Parker 1990; Orzack
1990; Orzack et al. 1991). For strains of wasps sampled from a
Swedish population, the predictions of optimality models for three
behaviors are not quantitatively accurate and there are significant
differences among strains in their fit to predictions. A reasonable
interpretation of these results is that natural selection is an important
force causing sex ratios to evolve in the direction predicted by the
models; however, the stronger claim of local optimality is not sup-
ported by the data.
Like all scientific statements, both of these claims about optimal-
ity are contingent in the sense that new data and consideration of
new evolutionary models may lead to a changed assessment. So,
for example, a selective model that does not invoke optimality but
that explains the Sphex data better than the present model might
lead to a revised assessment of the trait in the New Hampshire
population.
As far as we know, these tests of optimality models differ from all
others in the literature because they include both quantitative assess-
ment of model accuracy and comparisons of the phenotypes of
individuals or isofemale strains. Many other tests include only a qual-
itative prediction of the model against a population phenotype or a
phenotypic average; some others include either a quantitative analy-
sis by itself or some comparison of individuals. As a result, each of
these studies can at best support the claim that natural selection
is an important cause of a trait’s evolution. Because mustering the
evidence to support this conclusion is a significant accomplishment,
many of these “incomplete” tests, even those involving only a test of
qualitative predictions, are worthy of high praise (e.g., Milinski 1979).
But none of these tests can support a claim for or against local opti-
mality. It is here that one can best appreciate the distinct nature of our
views about how to test an optimality model because many of these
tests have been accompanied by just such claims.
It is worthwhile reflecting on the use of ensemble tests in evolu-
tionary biology. The contingent nature of all evolutionary models and
data sets is no barrier to the construction or assessment of such a test.
Otherwise, as evolutionary biologists, we could not trade in state-
ments such as “Speciation is allopatric” or “Species are genetically
polymorphic.” But we do, and appropriately so. Although such
statements are presumably not meant to be taken literally in the
10
Introduction
sense that all species are said to have a certain property, they are
used in such a way that the implication is that they describe the vast
majority (more than 90%?) of species. Is it conceivable that more
than a very small fraction of species could actually have contributed
data to these ensemble claims? Of course not. But such statements
are taken to be based on enough independent data that we confi-
dently “fill in the gaps” and conclude that the data correctly repre-
sent a larger whole. Our point is not that these statements about
species are necessarily suspect but rather that the ensemble assess-
ment of hypotheses in evolutionary biology is nothing unusual. Of
course, this is not an entirely positive tradition. A common weakness
of ensemble statements is that there have been no clear criteria used
for construction of the ensemble; at best, one imagines that the hap-
hazard process by which this or that entity has been chosen for inten-
sive study (e.g., Drosophila melanogaster) or inclusion allows one to say
that some sort of representative sampling of species has occurred. In
the present instance, we think it best that investigators make a col-
lective effort in the form of a formally organized Adaptationism
Project to choose traits and species and to decide on methods of
analysis. Such an attempt would distinguish this ensemble test from
other such tests in evolutionary biology, which have not been for-
mally organized to our knowledge. One complex but resolvable
methodological question is the one confronting all ensemble tests
involving species: How does one properly assess a species, in as
much as it is an ensemble of populations?
For that matter, there are organizational and professional chal-
lenges to an effort to construct an ensemble test of adaptationism. It
presents a special challenge to a field with a research enterprise that
is conceptually decentralized. After all, evolutionary biology is a field
that resists the designation of model systems, at least partially in the
belief that every species is scientifically unique. This attitude clearly
has not ruled out less formal ensemble tests, but it implies that a more
formal test may be harder to organize. We also have an academic
culture in which the recognition of individual achievement is
regarded as essential. Again, this may make an ensemble test of adap-
tationism all the harder.
Two developments in evolutionary biology during the past 20
years or so likely have implications for the construction of the
ensemble test of adaptationism. The first relates to how evolutionary
models are perceived and used by the community of evolutionary
11
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LITERATURE CITED
22
Introduction
Orzack, S. H., E. D. Parker, Jr., and J. Gladstone. 1991. The comparative biology
of genetic variation for conditional sex ratio adjustment in a parasitic wasp,
Nasonia vitripennis. Genetics 127: 583–599.
Orzack, S. H., and E. Sober. 1994a. Optimality models and the test of adapta-
tionism. American Naturalist 143: 361–380.
Orzack, S. H., and E. Sober. 1994b. How (not) to test an optimality model. Trends
in Ecology and Evolution 9: 265–267.
Orzack, S. H., and E. Sober. 1996. How to formulate and test adaptationism.
American Naturalist 148: 202–210.
23
Chapter 1
24
Phylogenetic Analysis of Adaptation
25
david a. baum and michael j. donoghue
26
Figure 1.1. A hypothetical example of the parsimony approach to the study of adaptation
(see Baum and Larson 1991). A phylogeny is shown for a plant group, some of which have
the ancestral condition, white petals, whereas others have the derived condition, red petals
(shown in gray). Parsimony is used to locate the branch on which petal color changed. To
test the hypothesis that red petals evolved due to natural selection for the biological role
of attracting pollinating birds, we first must show that red petals perform better than white
petals in bird-pollinated plants. If this is shown, and if parsimony reconstruction of the pol-
lination mechanism (the selective regime as defined by Baum and Larson 1991) implies
that red petals evolved on a bird-pollinated lineage (top panel), then the adaptive hypoth-
esis is supported. In contrast, if red petals evolved in a bee-pollinated lineage (middle
panel), then the character cannot have evolved via natural selection for bird attraction and,
therefore, it is not an adaptation (it is an exaptation sensu Gould and Vrba 1982). If bird
pollination and red petals evolve on the same branch (bottom panel), the result is equivo-
cal; the adaptive hypothesis is neither supported nor rejected.
david a. baum and michael j. donoghue
1. If both the character and the selective regime are inferred to have
changed on the same branch of the phylogeny, then the method
returns an equivocal answer because it cannot be stated with con-
fidence that the character evolved after the selective regime as
demanded by the adaptive hypothesis (Baum and Larson 1991;
Figure 1.1). This makes the method inapplicable to characters that
are under such strong selection in the derived selective regime that
they evolve too quickly for cladogenesis to capture the historical
ordering of events. Such strongly selected adaptations are of great
interest, so it is reasonable to wish that we had the methodologi-
cal tools to study them.
2. The approach requires that we commit to a particular tree and to
a particular reconstruction of the characters and selective regimes
on that tree. We know that any inference of a phylogeny or of
ancestral states, given a phylogeny, is subject to error. However,
the parsimony approach does not take into account such uncer-
tainty, and it does not distinguish between cases in which we are
very confident of our historical inferences versus those in which
we are unsure.
3. The parsimony approach focuses exclusively on character origin.
As discussed earlier, a character that we observe in a living taxon
has not only evolved but has also been maintained in at least one
lineage through to the present day. However, although under-
28
Phylogenetic Analysis of Adaptation
A LIKELIHOOD FRAMEWORK
29
david a. baum and michael j. donoghue
30
Phylogenetic Analysis of Adaptation
A likelihood ratio greater than 1.0 would indicate that the data
favored the adaptive hypothesis, whereas a likelihood ratio less than
1.0 would mean that the data argue for the alternative hypothesis.
The magnitude of the ratio is a measure of the objective support
for the favored hypothesis (Edwards 1992). Various approaches are
available to interpret these ratios. Edwards (1992) suggested that
a likelihood ratio convincingly favors a hypothesis when the natural
logarithm of that ratio exceeds a score of 2.0 (see also Schluter et al.
1997). Alternatively, one can compare the ratio to a null distribution
to evaluate its “significance.” In some situations one expects log like-
lihood ratios to follow a c2 distribution, with the number of degrees
of freedom determined by the difference in the number of free vari-
ables in the two models (Felsenstein 1981). In some cases, such as
when the two hypotheses are not nested, a c2 distribution is not
the appropriate null expectation. In those cases the likelihood ratio
can be evaluated by Monte Carlo simulation (e.g., Sanderson and
Donoghue 1994; Pagel 1994b). It should be noted that there is some
question as to how “P-values” should be interpreted in likeli-
hood statistics (Sanderson 1995).
Interestingly, the parsimony approach described earlier can be
rephrased as a special case of the likelihood method with certain sim-
plifying assumptions. In effect, it is assumed that Lalt is close to zero,
meaning that the strength of support for the adaptive hypothesis is
basically determined entirely by Ladapt. If the character confers a per-
formance advantage for the biological role relative to the antecedent
state (i.e., it passes the test of current utility) and if the character
evolved at a time when enhanced performance of the biological role
was selectively favored (i.e., it passes the test of historical genesis),
the character is seen as having a high likelihood of evolving (i.e., Ladapt
takes on an unspecified high value). Given that Lalt is assumed to be
close to zero, the likelihood ratio in this case would be large and the
hypothesis would be supported by the data. If, on the other hand,
the character either lacks current utility or evolved at a time when
improved performance of the biological role was not favored, then
Ladapt takes on an unspecified low value, similar in magnitude to Lalt.
With Ladapt/Lalt close to 1.0, the null hypothesis cannot be rejected and
the adaptive hypothesis is not justified by the data.
The simplifying assumptions built into the parsimony formulation
may be reasonable in many circumstances, and, thus, we see no
grounds for rejecting that methodology outright. However, the
31
david a. baum and michael j. donoghue
assumption that Lalt is low will not apply, for example, if there are rival
biological roles that could equally account for the origin of a character.
Therefore, the parsimony method might give unwarranted support for
the adaptive hypothesis (as noted by Leroi et al. 1994). Genetic drift
also must be considered as a potential reason for the evolution of a
character, especially if populations at the time of fixation were small.
Similarly, Ladapt need not always be large – for example, if the perfor-
mance advantage is minimal. Thus, even if the tests of current utility
and historical genesis are passed, an adaptive hypothesis might be
only weakly supported by the data. Clearly, it would be desirable to
have a framework for evaluating Ladapt and Lalt directly.
32
Phylogenetic Analysis of Adaptation
33
david a. baum and michael j. donoghue
34
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meno sonora e che l’eco ne morisse; poi gli nacque un dubbio che
ritornò a tormentarlo con insistenza assidua:
— Ma.... o io sogno.... o questa è musica che conosco!
E non sognava e ben presto se ne convinse per sua personale
esperienza.
La Giovine Turchia aveva cambiato i suonatori, ma la musica era la
stessa.
Giunse a Derna il nuovo kaimakan con le sue donne.
Fu ricevuto a gran festa; si installò nel palazzo del comando come i
reucci da fiaba.
E cominciò la serie delle mirabili cortesie.
Inchini a destra, sorrisi a sinistra e strette di mano e parole soavi,
mentre in cuor suo cantava l’antica antifona turchesca:
— Accidenti ai giaurri!
Sorrisi e parole oh! tante quanti i datteri su la palma.
E il nostro connazionale cominciò a bene sperare. Le necessarie
formalità per la legittimazione de’ suoi terreni sarebbero state
compiute ed egli avrebbe potuto mettersi all’opera; senonchè....
Ecco; la prima volta ch’egli ne parlò al kaimakan (erano diventati
intimi amici), questi fece le più alte meraviglie. Come mai a
Costantinopoli si aspettava tanto? Come spiegare una così dannosa
incuria? Non era l’Italia una nazione amica, anzi una fra le migliori
amiche della Turchia?
— Non dubiti, scriverò, scriverò; la cosa sarà sbrigata entro un
termine relativamente breve. È bene si cominci la cultura di queste
terre. Lo Stato deve concedere, facilitare, stimolare, difendere.... —
e giù una fiumana di parole entusiastiche.
Il nostro connazionale se ne andò sfregandosi le mani. Era giunta la
volta buona.
Che cara persona quel kaimakan, e che esatta visione delle cose e
quale modernità d’intendimenti!... Con una persona tanto compita
non conveniva insistere, non bisognava mostrarsi seccatori; egli
avrebbe agito per conto proprio ottenendo sicuramente un risultato
favorevole.
E il nostro amico comincia ad aspettare, non trascurando pertanto di
usare le dovute cortesie a quel caro giovine turco.
E passan due mesi, passan cinque mesi, ne passano otto....
L’italiano guardava timidamente il riverito rappresentante della
potenza islamitica; ma questi non capiva, sorrideva, aumentava le
cortesie, parlava dei canali di Marte; poi un giorno in cui al
connazionale nostro rinacque quel tale dubbio di cui abbiamo detto
sopra, un giorno in cui il suo buonumore era relativo, si decise a
parlare:
— Dica un po’, e le mie terre?
— Quali terre?...
— Quelle di cui abbiamo parlato, via!... Quelle che debbono essere
segnate a catasto!
— Ah! sì, mi ricordo, perdoni. Ha ragione, ha ragione; ma ho scritto,
vede, ho scritto e ho fatto sollecitudine!... Non capisco come non mi
abbiano ancora risposto. Ma abbia la cortesia di aspettare.... guardi,
lei è qui, leggerà la mia nuova lettera, poi la spediremo. Va bene?
— Benissimo.
E la nuova lettera è scritta nei termini più soddisfacenti ed è affidata
al primo piroscafo che la porti a Costantinopoli. La risposta non si fa
aspettare, senonchè....
Una sera, dopo l’arrivo del postale da Costantinopoli, il nostro
connazionale ti vede il kaimakan, ma con tale una faccia nera da
sembrare uno spaventapassere; fa per tirar di lungo; ad un tratto si
pente, fa un cenno al nostro amico, il quale, quando gli è vicino, si
sente dire in tono cavernoso:
— Venga; dobbiamo essere soli!
E vanno. Quando sono soli, il kaimakan estrae di tasca una lettera,
ma prima di consegnarla all’amico nostro gli dice:
— Lei mi deve promettere di non compromettermi.
— Comprometterla?
— Sì. Si tratta di un affare gravissimo. La mia posizione ne va di
mezzo.
— Ma dica, dica e si fidi della mia discrezione.
Una pausa. La lettera è consegnata.
— Legga!...
E il nostro connazionale legge strabiliando, poi si stringe fra le spalle
e se ne va raumiliato.
Nella lettera in questione il Governo centrale rimproverava
aspramente il kaimakan per il suo poco patriottismo (parole testuali)
e lo consigliava di non insistere troppo su certi punti, minacciandolo
altresì di punizioni severissime.
Che dire dopo tutto ciò? Con quale coraggio insistere?...
E qui torna a proposito il terzo senonchè....
La commedia era troppo evidente; i machiavellucci da strapazzo non
conoscevano la buon’arte toscana dell’inganno politico, chè non
erano soccorsi nè dall’alto ingegno, nè dalla scaltrezza, nè dalla
furberia dei nostri uomini maggiori; non sapevano essere che astuti
come le volpi e come i contadini, e cioè di una grossolana astuzia la
quale non saprebbe ingannare non già un cane da fiuto, ma più
inesperto bamboccio in fatto di politica.
Di questo si avvide il nostro connazionale, ma a quali ripari poteva
ricorrere?
La commediola fra il kaimakan e il Governo di Costantinopoli era più
che evidente: il kaimakan non aveva fatto che il giuoco del Governo
e, per non avere ulteriori noie dal suo amico personale, era ricorso
allo strattagemma perfidiosetto della lettera minacciosa.
Necessariamente l’amico avrebbe abboccato all’amo, e pace e patta!
Questa storiella si è svolta nell’anno di grazia dell’Egira 1287 e più
precisamente nel nostro 1909.
Potrei documentarla e far nomi. In essa non è una parola aggiunta,
nè un particolare esagerato.
La persona di cui ho parlato attende ancora, se pure, come ne
espresse desiderio, non ha lasciato in asso tutto e non ha
abbandonato la Cirenaica.
Il sentirsi le mani legate, il vedersi ostacolare sordamente ogni
iniziativa è cosa che finisce per stancare un uomo d’azione, il quale
vede nel mondo altri campi aperti alla propria energia.
Se ha resistito con la perseveranza della nostra razza che non si
lascia infiacchire, vorrei augurarmi ch’egli potesse da solo (e l’Italia
ha sempre fatto da sola oltre il suo Governo decorativo) ottenere il
risultato che merita, ma che mi sembra tuttavia molto dubbio; se poi
ha abbandonato il campo, i Giovani Turchi si fregheranno le mani
gioiosamente assegnando la diserzione a un nuovo trionfo del loro
sistema.
Essi vogliono ostacolare in qualunque modo l’opera e l’impiego del
capitale italiano in Cirenaica, e siccome non sono forti e non possono
opporsi con la violenza, si adornano di sorrisi e di salamelecchi, e
con mille scuse e con inchini profondi ci mettono soavemente alla
porta.
Essi non hanno per ora nè capitali, nè energie da impiegare nello
sfruttamento di queste terre; ma che importa? il popolo è bestia: si
nutre di Allah e di una manciata di grano, e muore convinto che così
era scritto. Poi: favorire un russo, un inglese, un patagone, sì; ma un
italiano, no.
In Tunisia i francesi ci trattano come bestie da soma, ci negano le
scuole, ci fanno una colpa di essere italiani, e noi zitti; in Cirenaica
siamo perseguitati e messi alla porta, e noi zitti; in Tripolitania
succede altrettanto, e noi raccomandiamo il silenzio e ci umiliamo.
La linea di navigazione, sussidiata dal Governo, la quale partendo da
Catania tocca la Tripolitania, la Cirenaica, l’isola di Creta, Smirne e
Costantinopoli (linea istituita a solo beneficio dei turchi), ha dato fino
ad ora risultati magnifici. La nostra penetrazione, come abbiamo
veduto a Derna e come accade a Bengasi e a Tripoli, si svolge
indisturbata, e gli ingenui che si rivolgono ai nostri consoli per aver
schiarimenti, li trovano fermi in un gesto ieratico, come il dio indiano
accosciato sul fiore di loto; le mani sul ventre dorato.
Bengasi.
La storia di un pellegrino.
Sempre cortesie.
In mare.
Il “Ramadan„ in viaggio.
L’isola di Venere.
Da Cythera a Mitilene.
Un canto dei Lapponi, e cioè degli uomini che abitano le ultime terre
verso il silenzio polare, dice ad un dipresso così:
Tristezze nordiche.