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Organic Chemistry, Sixth Edition © 2012, 2009 Brooks/Cole, Cengage Learning
William H. Brown, Christopher
S. Foote, Brent L. Iverson, Eric V. Anslyn ALL RIGHTS RESERVED. No part of this work covered by the copyright
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Organic Chemistry
SIXT H EDIT ION
William H. Brown
Beloit College
Christopher S. Foote
University of California, Los Angeles
Brent L. Iverson
University of Texas, Austin
Eric V. Anslyn
University of Texas, Austin
Australia • Brazil • Japan • Korea • Mexico • Singapore • Spain • United Kingdom • United States
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Dedication
This Sixth Edition is dedicated to the memory of our dear friend and
colleague, Christopher Foote. Chris’ insights, encouragement, and
dedication to this project can never be replaced. His kind and nurturing
spirit lives on in all who are lucky enough to have known him.
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About the Authors
CHRISTOPHER S. FOOTE received his B.S. from Yale University and his Ph.D.
from Harvard University. His scholarly credits include Sloan Fellow; Guggenheim
Fellow; ACS Baekland Award; ACS Cope Scholar; Southern California Section ACS
Tolman Medal; President, American Society for Photobiology; and Senior Editor,
Accounts of Chemical Research. He was a Professor of Chemistry at UCLA.
BRENT L. IVERSON received his B.S. from Stanford University and his Ph.D.
from the California Institute of Technology. He is a University Distinguished Teaching
Professor at The University of Texas, Austin as well as a respected researcher. Brent’s
research spans the interface of organic chemistry and molecular biology. His group
has developed several patented technologies, including an effective treatment for
anthrax.
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Contents in Brief
Appendices:
1. Thermodynamics and the Equilibrium Constant
2. Major Classes of Organic Acids
3. Bond Dissociation Enthalpies
4. Characteristic 1H-NMR Chemical Shifts
5. Characteristic 13C-NMR Chemical Shifts
6. Characteristic Infrared Absorption Frequencies
7. Electrostatic Potential Maps
8. Summary of Stereochemical Terms
9. Summary of the Rules of Nomenclature
10. Common Mistakes in Arrow Pushing
11. Organic Chemistry Road Maps
Glossary
Index
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Contents
1.8 Resonance 42
HOW TO Draw Curved Arrows and Push Electrons in Creating Contributing Structures 43
vi
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CHEMICAL CONNECTIONS Octane Rating: What Those Numbers at the
Pump Mean 103
Contents vii
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5.4 Naturally Occurring Alkenes—Terpene Hydrocarbons 197
CONNECTIONS TO BIOLOGICAL CHEMISTRY The Importance of Cis Double Bonds
in Fats Versus Oils 199
viii Contents
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CONNECTIONS TO BIOLOGICAL CHEMISTRY Antioxidants 318
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11.5 Reactions of Ethers 443
11.6 Silyl Ethers as Protecting Groups 445
11.7 Epoxides: Structure and Nomenclature 447
11.8 Synthesis of Epoxides 448
11.9 Reactions of Epoxides 452
11.10 Ethylene Oxide and Epichlorohydrin: Building Blocks in Organic Synthesis 455
11.11 Crown Ethers 458
11.12 Sulfides 459
Summary 460 • Problems 465
x Contents
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CONNECTIONS TO BIOLOGICAL CHEMISTRY Mass Spectrometry of Biological
Macromolecules 553
Contents xi
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17.7 Esterification 661
CHEMICAL CONNECTIONS The Pyrethrins: Natural Ester-containing Insecticides of
Plant Origin 663
xii Contents
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CHEMICAL CONNECTIONS Ibuprofen: The Evolution of an Industrial Synthesis 770
Contents xiii
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CONNECTIONS TO BIOLOGICAL CHEMISTRY The Planarity of !NH2 Groups
on Aromatic Rings 958
xiv Contents
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26.5 Phospholipids 1085
CHEMICAL CONNECTIONS Snake Venom Phospholipases 1087
Contents xv
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Appendices:
1. Thermodynamics and the Equilibrium Constant A-1
2. Major Classes of Organic Acids A-2
3. Bond Dissociation Enthalpies A-3
4. Characteristic 1H-NMR Chemical Shifts A-4
5. Characteristic 13C-NMR Chemical Shifts A-5
6. Characteristic Infrared Absorption Frequencies A-6
7. Electrostatic Potential Maps A-7
8. Summary of Stereochemical Terms A-8
9. Summary of the Rules of Nomenclature A-12
10. Common Mistakes in Arrow Pushing A-20
11. Organic Chemistry Road Maps A-25
Glossary G-1
Index I-1
xvi Contents
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List of Mechanisms
Chapter 7 Alkynes
Addition of HBr to an Alkyne (Section 7.6B)
HgSO4/H2SO4 Catalyzed Hydration of an Alkyne (Section 7.7B)
Reduction of an Alkyne by Sodium in Liquid Ammonia (Section 7.8C)
Chapter 10 Alcohols
Reaction of a 3° Alcohol with HBr—An SN1 Reaction (Section 10.5A)
Reaction of a 1° Alcohol with HBr—An SN2 Reaction (Section 10.5A)
Rearrangement upon Treatment of Neopentyl Alcohol with HCl (Section 10.5A)
xvii
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Reaction of a Primary Alcohol with PBr3 (Section 10.5B)
Acid-Catalyzed Dehydration of 2-Butanol—An E1 Reaction (Section 10.6)
Acid-Catalyzed Dehydration of an Unbranched Primary Alcohol (Section 10.6)
The Pinacol Rearrangement of 2,3-Dimethyl-2,3-butanediol (Pinacol) (Section 10.7)
Chromic Acid Oxidation of an Alcohol (Section 10.8A)
Oxidation of a Glycol by Periodic Acid (Section 10.8C)
Oxidation of an Alcohol by NAD+ (Section 10.8C)
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Chapter 17 Carboxylic Acids
Formation of a Methyl Ester Using Diazomethane (Section 17.7B)
Decarboxylation of a b-Ketocarboxylic Acid (Section 17.9A)
Decarboxylation of a b-Dicarboxylic Acid (Section 17.9B)
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Chapter 23 Amines
Formation of the Nitrosyl Cation (Section 23.8)
Reaction of a 2° Amine with the Nitrosyl Cation to Give an N-Nitrosamine
(Section 23.8C)
Chapter 26 Lipids
Oxidation of a Fatty Acid !CH2!CH2! to !CH"CH! by FAD (Section 26.2C)
xx List of Mechanisms
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Preface
Introduction
This Sixth Edition of Organic Chemistry significantly extends the transformation
started in the Fifth Edition. Students taking an organic chemistry course have two
objectives; the first is to learn organic chemistry, and the second is to establish the
intellectual foundation for other molecular science courses. Most often, these other
courses involve biochemistry or specialized topics such as materials science. This
textbook addresses these two objectives head-on by first presenting mechanistic and
synthetic organic chemistry geared toward giving students a fundamental under-
standing of organic molecules and reactions, as well as their mechanisms and uses
in organic synthesis. The text then builds upon the fundamentals by providing
an emphasis on bridging concepts that will prepare students for subsequent
science courses. Several unique elements including comprehensive end of chapter
summaries, a new paradigm for learning mechanisms and a new learning tool we
call Organic Chemistry Road Maps have been included to increase the efficiency of
student studying and learning.
Making Connections
All the important reaction mechanistic and synthetic details are still found throughout
the text, but we have increased the important connections between different reaction
mechanisms. The intent is to make the study of organic chemistry a process involving
the learning and application of fundamental principles and not an exercise in
memorization. Throughout this edition, the uniting concept of nucleophiles reacting
with electrophiles is highlighted. Especially helpful is the use of electrostatic potential
surface models of reacting molecules. These maps emphasize, in an easily interpreted,
color-coded fashion, how the majority of reactions involve areas of higher electron
density on one reactant (a nucleophile) interacting with areas of lower electron
density on the other reactant (an electrophile).
xxi
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A Fresh Look at Orbitals
An organic chemist’s theoretical framework for understanding electron density
within molecules is based on atomic and molecular orbitals. Paradoxically, organic
chemistry texts generally provide only passing coverage of orbitals, never revealing
their true shapes or full significance. The Sixth Edition is the first organic text to
paint a detailed picture of the orbital nature of electron density in Chapter 1 by
focusing on the interplay between the two complementary approaches to orbital
descriptions, valence bond theory and molecular orbital theory. Chapter 1 provides
a comprehensive description of how electronic theory is used by organic chemists
to understand structure, bonding, and reactivity. Significantly, students are given
easy-to-use guidelines that detail when and how to use electronic theory, even in
complex situations, such as molecules described by multiple resonance contributing
structures. The inclusion of calculated orbital diagrams side-by-side with the familiar
orbital cartoons gives students a greater appreciation for orbital sizes and shapes that
are reinforced throughout the book. The intent is to provide students with a strong
theoretical foundation that will give them unprecedented insight and intuition into
molecular structure and reactivity.
Mastering Skills
Mastering organic chemistry requires the development of certain intellectual skills.
To this end, eleven How To boxes highlight “survival skills” for organic chemistry
students. Topics include, How To Draw Alternative Chair Conformations of Cyclohexanes
(Section 2.5), How To Draw Curved Arrows and Push Electrons (Section 1.8), and How
to Write Mechanisms for Interconversions of Carboxylic Acid Derivatives (Section 18.4).
xxii Preface
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Organic Chemistry Applied to the Synthesis
of Important Molecules
Organic chemistry enables the synthesis of thousands of useful molecules. Synthetic
applications of the reactions covered in this text are emphasized throughout, partly
through the many new challenging Synthesis problems, the goal of which is to
demonstrate to students how synthetic organic chemistry is used in pharmaceutical
research and in the production of useful pharmaceuticals. The text provides
applications of the reactions to the synthesis of important molecules such as Valium,
fluoxetine (Prozac), meperidine (Demerol), albuterol (Proventil), tamoxifene, and
sildefanil (Viagra). Multi-Step Synthesis problems challenge students to develop their
own multi-step synthetic plan for converting a relatively simple starting material
into a more complex target molecule. Multi-step synthesis is supported by an
expanded description of retrosynthetic analysis in multiple chapters, including tips
on recognizing when to use certain reactions, such as those involving enolates in the
construction of complex structures.
Preface xxiii
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Unique Organizational Elements
❱ Together, Chapter 1 (comprehensive description of electronic theory) and Chapter 3
(detailed description of acids and bases in organic chemistry) provide a fundamental
grasp of molecular structure and properties, giving students the basis to understand all
aspects of the mechanistic discussions that follow. Equipping students with the proper
tools from the beginning gives them a predictive command of reactivity and foster
chemical intuition, while discouraging superficial memorization.
❱ Because of the increased use of NMR spectroscopy in chemical and biochemical
research, as well as the growing dependence on MRI for medical diagnosis, Chapter 13,
Nuclear Magnetic Resonance Spectroscopy, is detailed and up-to-date. The practical
and theoretical aspects concerning NMR spectra and signal splitting patterns are
highlighted and a complete description of FT-NMR provides a stronger technical
connection to MRI.
❱ Carbonyl chemistry (Chapters 16–19) is placed earlier than most texts so professors
have the time to teach this material to the majority of students in an organic chemistry
class, who are geared toward a life-science degree and/or career in the health
professions. Carbonyl chemistry is fundamental to the chemistry of living systems
and connections between carbonyl chemistry and the chemistry of carbohydrates is
highlighted earlier in the book. This latter change mirrors the increasing importance
of carbohydrate chemistry on the MCAT.
❱ Chapter 24, Carbon–Carbon Bonding Forming Reactions, combines knowledge
from previous chapters and challenges students to devise syntheses. The intent to is
expose students to the excitement and challenge of modern synthetic chemistry.
xxiv Preface
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❱ Chapter 9 was extensively rewritten to provide a clear description of the interplay
of parameters that determine mechanism among substitution and elimination
reactions. Students are shown how to analyze structures of the nucleophile and
electrophile and the reaction conditions that enable the accurate prediction of
reaction outcome.
❱ In Chapter 16, there is an increased emphasis on mechanism as the new format
was used for all mechanisms, and several new mechanism boxes were added.
❱ In Chapter 18, Section 18.3 on Characteristic Reactions was expanded to make it
easier to understand and an entirely new section was added in order to underscore
the key concept of microscopic reversibility.
❱ Chapter 20 was reorganized and renamed to reflect an expanded description
of pericyclic reaction theory with application to the Diels-Alder reaction and
sigmatropic shifts. The advanced concept of frontier molecular orbital (FMO)
interactions is now introduced and used to explain the various reactions in the
chapter.
❱ Chapter 24 has been expanded to include the Stille and Sonagashira couplings.
❱ OWL (Online Web Learning) for Organic Chemistry This fully integrated online
system features more than 6,000 practice and homework problems. OWL for Organic
Chemistry provides students with instant analysis and feedback to homework
problems, modeling questions, end-of-chapter questions, molecular-structure
building exercises, and animations created specifically for Organic Chemistry, Sixth
Edition.
Special Features
❱ New A revolutionary new paradigm for learning organic chemistry mechanisms is
introduced in Chapter 6 and then used throughout the book.
❱ New Organic Chemistry Road Maps are introduced as an innovation in organic
chemistry learning. Organic chemistry road maps are presented in end-of-chapter
problems and a new Appendix 11.
❱ New Accurate Orbital Diagrams have been added throughout the text to provide
students with a more realistic understanding of electronic theory as applied to
organic chemistry.
❱ New Two new appendices Appendix 10 on Common Mistakes in Arrow Pushing
and Appendix 11 on Organic Chemistry Road Maps.
❱ Updated Chemical Connections These essays illustrate applications of organic
chemistry to everyday settings. Topics range from Chiral Drugs to Drugs That Lower
Plasma Levels of Cholesterol and The Chemistry of Superglue. A complete list can
be found on the inside of the back cover.
❱ Updated Connections to Biological Chemistry Application of organic chemistry
to biology is emphasized throughout the text, in the Connections to Biological
Chemistry essays and in end-of-chapter problems. See the inside of the back cover for
a complete list. New essays include pyridoxine (Vitamin B6) and electron transfer
agents in biological oxidation-reduction reactions.
❱ Updated Eleven How To features are included in the first part of the book. These
describe “survival skills” for the organic chemistry student. Interactive versions of
these boxes are assignable in OWL.
❱ Updated In-Chapter Examples There are an abundance of in-chapter examples,
each with a detailed solution, so students can immediately see how the concepts
just discussed relate to specific questions and their answers. Following each in-
chapter example is a comparable in-chapter problem designed to give students the
opportunity to solve a related problem on their own.
Preface xxv
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them. In order both to ascertain such suspicion, and
discover so dangerous a person, all the Nuns were
ordered into one room, and there made to strip
themselves stark naked; when the Abbess, with her
spectacles on her nose (whence the Tale has received
its name) inspected them all, one after another,
carefully. To relate how the young Man,
notwithstanding the ingenious precautions he had
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foreign to our subject: let it here suffice to say that the
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the mean time a Miller, riding upon his Ass, went
through the wood; and seeing the young Man in the
abovementioned plight, stopped, and asked him the
reason of it: to which the latter made answer, that it
was those wicked Nuns who had put him in that
situation, because he would not gratify their wanton
requests; that he had rather die than be guilty of such
thing. The Miller then cast upon him a look of the
utmost contempt ... but it will be better to refer the
Reader to the abovementioned Author himself, for the
inimitable Dialogue that passed between the young
Man and the Miller: here it will be enough to say, that
this latter proposed to the other to put himself in his
place, and warranted him he would behave in quite a
different manner, and much more to the satisfaction of
the Nuns than he had done. The young Man had no
need of much encouragement to accept the proposal:
after the Miller had released him, and stripped himself,
he tied him fast to the same tree, and had just time
enough to steal away, and hide himself behind some
neighbouring bush, when the Nuns rushed again out of
the same door at which they had got in, armed with all
the disciplines and besoms they had been able to find
in the Convent. They immediately marched up to the
person who was tied to the tree, and without minding
the broad shoulders and brawny limbs which were now
offered to their view, began to use their disciplines with
great agility. In vain did the Miller expostulate with
them on their using him so ill: in vain did he
remonstrate that he was not the Man whom they took
him to be; that he was not that beardless stripling, that
milk-sop simpleton, with whom they had formerly had
to do, that woman-hater who had given them so just a
cause of dissatisfaction; that they ought to try him
before they entertained so bad an opinion of him:—in
vain did he even at last, in the extremity of pain, apply
to the utmost powers of his native language, to convey
to them the clearest ideas he could, both to those
wishes he supposed in them, and of his great abilities
to gratify them: the more loudly and clearly he spoke,
the more unmercifully they laid on, and only left him
when they had worn out their disciplines.
Cervantes likewise, whose authority is equal to that
of any Author, and who has moreover thrown a great
light upon the subject of flagellations, has introduced a
fact which greatly serves to confirm the observations
we are discussing here. I mean to speak of what
happened in that memorable night in which the Senora
Rodriguez paid a visit to the valorous Don Quixote, in
his bed. That Gentlewoman having, in the course of
the conversation she had with the Knight, dropped
several reflections of a very bad kind on the Duchess
and the fair Altisidora, who were at that very instant
listening at the door, these two Ladies, though justly
and greatly offended at the liberty that was thus taken
with their character, recurred to no expedient of a
coarse and rough kind to avenge the insult; but they
immediately applied to the summary, yet smart,—
genteel, yet effectual, mode of correction here alluded
to, namely, a flagellation. And here the Author we
mention has taken an opportunity of giving a singular
instance of the readiness of wit of the fair Sex, and of
the quickness with which they usually extricate
themselves out of the seemingly most perplexing
difficulties. The Duchess and Altisidora were entirely
destitute of the necessary instruments to inflict the
chastisement they had resolved upon; but they had the
great presence of mind to think of using their slippers
for that purpose: they presently pulled them off their
feet; bounced the door open; ran to the Senora
Rodriguez; in the twinkling of an eye made her ready
for flagellation, and immediately began to exert their
new weapons with great dexterity. Thence, still in the
dark, they passed to the astonished Knight, who lay
snug in his bed, and who, by his listening to the stories
of the Senora, and also by his questions, had
encouraged her to proceed in her reflections (a thing
which he might full as well have avoided doing) and
bestowed upon him a few of those favours they had so
plentifully heaped upon the above Gentlewoman.
At this place might also be mentioned, as being
extremely well in point to the subject we are treating,
the kind of satisfaction required by Dulcinea, from
Sancho, and that which the Lady introduced by Butler,
prescribed to the renowned Hudibras, while he was in
the stocks; though, I confess, it might be said that the
corrections here alluded to, were only advised, not
inflicted, by the above Ladies. But it will suffice to
mention, as a conclusion of these quotations from
great Authors, the manner in which Lazarillo de
Tormes, the notorious Spanish Cheat, was served by
his four Wives. Having found out the place of his
abode, they immediately agreed among themselves to
serve him with the elegant kind of chastisement here
mentioned; and having all together surprized him one
morning, while he was asleep, they tied him fast to his
bed, and served upon him one of the most dreadful
flagellations that ever were inflicted, since the use of
them has been contrived, as we are told in the History
of the Life of the said Lazarillo; a Book which is still in
repute in Spain, it being written with humour, and
containing true pictures of the manners of that Country,
and being even, as some say, founded on real facts.
Nor are true and well-authenticated instances
wanting, to confirm the same observations. None,
however, can be mentioned, that sets in a stronger
light the love of justice inherent in the female Sex, and
their constant attention to make choice of expedients
of an elegant kind to express their resentment, than
the custom that prevails in France and Italy, and
perhaps in other Countries, according to which, Ladies
use to flagellate their acquaintances, while they are yet
in bed, on the morning of the day of the festival of the
Innocents; whence this flagellatory custom is called
“giving the Innocents” (dar gli Innocenti): the word
Innocent, we may observe, has, in both the Italian and
French languages, besides the English signification of
it, that of fool, or simpleton; hence the words, the Day
of the Innocents, seem also to signify in those two
languages, the Fools day, or the day of the Unwary.
Nay, so well established is the custom we mention,
that Women, in those parts, look upon that day, as a
day of general justice and retribution, or an Assize or
Sessions day, to which they refer taking satisfaction for
the slight offences they may receive in the course of
the year, especially from their male friends. They even
will sometimes, when the latter hesitate too much in
granting their requests, or misbehave in any manner,
hint to them the fatal consequences that may ensue
from such a conduct, and plainly intimate to them, that
a certain day in the year is to come on which every
thing is to be atoned for.
When this important day is arrived, those Ladies
who have agreed to join together in the same party, or
(to continue the comparison drawn from the law that
has been above employed) who have agreed to go
together upon the circuit, repair early in the morning to
the appointed place of rendezvous, for instance the
apartment of one of them, sufficiently provided with
disciplines from their respective kitchens; and after
laying the plan of their operations, they sally out, to
take a round to the apartments of their different
acquaintances.
The prudent and cautious, on such an important day,
take great care to secure well the bolts and locks of
their doors; or rather, fearing that sleep should
overcome them, and knowing how fatal neglect might
prove, they take that precaution on the evening before,
when going to bed, and as an additional security, they
heap all the chairs and tables against the door. Others,
who are of a bold and daring spirit, on the contrary
affect on that day, to leave the doors of their rooms
wide open, and stay in bed, resolved to wait the event,
and undauntedly to face the storm. However, as such
an affectation of bravery seems to indicate that some
present trick, or at least some future retaliation of
some kind or other is intended, the Ladies commonly
keep clear from a place they judge so ominous; unless
there happens to be one among them of an
uncommonly courageous turn of mind, who places
herself in the van, encourages the whole party; and
they all together rush into the room and fall upon the
adventurous Hero, who is then made to pay dearly for
his temerity. When this does not happen to be the
case, and at the same time they find the doors of all
those persons whom they had expressly marked out
for chastisement, to be proof against either a coup-de-
main or a regular siege, as they must not part without
some effectual business has been transacted, the
cloud commonly breaks upon some unfortunate
Simpleton, who has left his door open for no other
reason than because he had forgot what day of the
month it was; they lay fast hold of him, and seldom
leave him before their disciplines are worn out to the
stumps. The story is soon circulated in whispers in the
neighbourhood; and if any person who has not yet
heard of it, observes that the Gentleman appears that
day uncommonly grave and sulky, his wonder
presently ceases, when he is told that, on the morning,
they have given him the Innocents.
The custom we mention, seems to be of pretty
ancient date; it is alluded to in that old Book formerly
quoted, The Tales of the Queen of Navarre. A Man, an
Upholsterer by trade, as it is said in one of these Tales
(for Men will sometimes avail themselves of the
practice in question when it may serve their turn) a
Man was in love with his servant Maid; and as he did
not know how to find an opportunity to escape the
vigilance of his Wife, and be alone with her, he
pretended, in a conversation he brought about on the
subject, on the eve of Innocent’s day, to find much fault
with the Maid; complained that she was a lazy Wench,
and so on; and added, that, in order to teach her
better, he proposed, on the next morning, to give her
the Innocents. The Wife greatly applauded his
resolution: at break at day, he accordingly rose from
his bed, took up a discipline of such a monstrous size,
that his Wife’s heart aked to think what correction the
Maid was about to undergo, and ran up stairs with a
disposition of seemingly very great severity: however, I
am happy to inform the Reader, that, after he had
bounced the door open, and at first frighted the Maid
very much, every thing was concluded in an amicable
manner.
If from Ladies of a middling station in life, and in the
class of Upholsterers, we turn our eyes towards Ladies
of rank, and Court Ladies, we shall meet with
instances no less instructive and interesting.
We may, in the first place, mention the case of the
Poet Clopinel, which has been alluded to in a former
Chapter. This Poet, who was also called John of
Mehun (a small Town on the river Loire) lived about the
year 1300, under the reign of Philip the Fair, King of
France, at whose Court he was well received. He
wrote several Books, and among others translated into
French the Letters of Abelard to Heloisa: but that of his
works which gave him most reputation, was his
conclusion of the celebrated Roman de la Rose; a
Poem of much the same turn with Ovid’s Art of Love,
which had been begun by William de Lorris, and met
with prodigious success in those times, and was
afterwards imitated by Chaucer. However, Clopinel
gave great offence to the whole Sex, by four lines he
had inserted in that Poem, the meaning of which is as
follows:—“All of you are, will be, or were, either in
deed, or intention, wh-res; and whoever would well
search into your conduct, wh-res would find you all to
be.”
Toutes êtes, serez, ou futes
De fait ou de volonté, putes;
Et qui bien vous chercheroit
Toutes putes vous trouveroit.
The meaning of these verses, if we take from them
the coarseness of the expressions, which did not
perhaps sound so harsh in those times as they would
in our days, did not at bottom differ from the well-
known line of Pope,
“—Every Woman is at heart a Rake.”