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Understanding Complex Systems
Analysis and
Data-Based
Reconstruction of
Complex Nonlinear
Dynamical Systems
Using the Methods of Stochastic
Processes
Springer Complexity
Springer Complexity is an interdisciplinary program publishing the best research and
academic-level teaching on both fundamental and applied aspects of complex systems—cutting
across all traditional disciplines of the natural and life sciences, engineering, economics,
medicine, neuroscience, social and computer science.
Complex Systems are systems that comprise many interacting parts with the ability to
generate a new quality of macroscopic collective behavior the manifestations of which are
the spontaneous formation of distinctive temporal, spatial or functional structures. Models
of such systems can be successfully mapped onto quite diverse “real-life” situations like
the climate, the coherent emission of light from lasers, chemical reaction-diffusion systems,
biological cellular networks, the dynamics of stock markets and of the internet, earthquake
statistics and prediction, freeway traffic, the human brain, or the formation of opinions in
social systems, to name just some of the popular applications.
Although their scope and methodologies overlap somewhat, one can distinguish the
following main concepts and tools: self-organization, nonlinear dynamics, synergetics,
turbulence, dynamical systems, catastrophes, instabilities, stochastic processes, chaos, graphs
and networks, cellular automata, adaptive systems, genetic algorithms and computational
intelligence.
The three major book publication platforms of the Springer Complexity program are the
monograph series “Understanding Complex Systems” focusing on the various applications of
complexity, the “Springer Series in Synergetics”, which is devoted to the quantitative theo-
retical and methodological foundations, and the “Springer Briefs in Complexity” which are
concise and topical working reports, case studies, surveys, essays and lecture notes of rele-
vance to the field. In addition to the books in these two core series, the program also incor-
porates individual titles ranging from textbooks to major reference works.
Series Editors
Henry D. I. Abarbanel, Institute for Nonlinear Science, University of California, San Diego, La Jolla, CA, USA
Dan Braha, New England Complex Systems Institute, University of Massachusetts, Dartmouth, USA
Péter Érdi, Center for Complex Systems Studies, Kalamazoo College, USA and Hungarian Academy of
Sciences, Budapest, Hungary
Karl J. Friston, Institute of Cognitive Neuroscience, University College London, London, UK
Hermann Haken, Center of Synergetics, University of Stuttgart, Stuttgart, Germany
Viktor Jirsa, Centre National de la Recherche Scientifique (CNRS), Université de la Méditerranée, Marseille,
France
Janusz Kacprzyk, Polish Academy of Sciences, Systems Research Institute, Warsaw, Poland
Kunihiko Kaneko, Research Center for Complex Systems Biology, The University of Tokyo, Tokyo, Japan
Scott Kelso, Center for Complex Systems and Brain Sciences, Florida Atlantic University, Boca Raton, USA
Markus Kirkilionis, Mathematics Institute and Centre for Complex Systems, University of Warwick, Coventry,
UK
Jürgen Kurths, Nonlinear Dynamics Group, University of Potsdam, Potsdam, Germany
Ronaldo Menezes, Department of Computer Science, University of Exeter, UK
Andrzej Nowak, Department of Psychology, Warsaw University, Warszawa, Poland
Hassan Qudrat-Ullah, King Fahd University of Petroleum and Minerals, Dhahran, Saudi Arabia
Linda Reichl, Center for Complex Quantum Systems, University of Texas, Austin, USA
Peter Schuster, Theoretical Chemistry and Structural Biology, University of Vienna, Vienna, Austria
Frank Schweitzer, System Design, ETH Zürich, Zürich, Switzerland
Didier Sornette, Entrepreneurial Risk, ETH Zürich, Zürich, Switzerland
Stefan Thurner, Section for Science of Complex Systems, Medical University of Vienna, Vienna, Austria
Understanding Complex Systems
Founding Editor: S. Kelso
123
M. Reza Rahimi Tabar
Department of Physics
Sharif University of Technology
Tehran, Iran
This Springer imprint is published by the registered company Springer Nature Switzerland AG
The registered company address is: Gewerbestrasse 11, 6330 Cham, Switzerland
In memory of Professor Rudolf Friedrich
(1956–2012) whose original and innovative
thinking with Professor Joachim Peinke on
the methods that we describe in this book
motivated a large body of work by others on
the subject.
Preface
The data analysis of physical observables has a long tradition in the field of
nonlinear dynamics and complex systems. Much effort has been devoted to
answering the question of how to extract a “deterministic” dynamical system from a
suitable analysis of experimental data, given that an appropriate analysis can yield
important information on dynamical properties of the system under consideration.
Fluctuations in these time series are usually considered as a purely random or
uncorrelated variable, which is additively superimposed on a trajectory generated
by a deterministic dynamical system. The problem of dynamical noise, i.e., fluc-
tuations that interfere with the dynamical evolution, has not been addressed in much
detail, although it is of utmost importance for the analysis of fluctuating time series.
This book focuses on a central question in the field of complex systems: Given a
fluctuating (in time or space), uni- or multi-variant sequentially measured set of
experimental data (even noisy data), how should one analyse non-parametrically
the data, assess underlying trends, uncover characteristics of the fluctuations
(including diffusion and jump contributions), and construct a stochastic evolution
equation? Here, the term “non-parametrically” exemplifies that all the functions and
parameters of the constructed stochastic evolution equation can be determined
directly from the measured data.
In recent years, significant progress has been made when addressing this ques-
tion to the classes of continuous stochastic processes and of processes with jump
discontinuities. These can be modeled by nonlinear generalized Langevin equations
that include additive as well as multiplicative diffusive and even jump parts. An
important building block for the analysis approach presented in this book is a
Markovian property, which can be detected in real systems above a certain time or
length scale. This scale is referred to as the Markov–Einstein scale, and has turned
out to be an important characteristic of complex time series. The Markov–Einstein
time scale is the minimum scale above which the data can be considered as a
Markov process, and one can estimate it directly from observations. The main
advantage of the analysis approach is that is completely data-based and thus allows
one to find all functions and parameters of the modeling directly from measured
data. Due to its feasibility and simplicity, it has been successfully applied to
vii
viii Preface
In Chap. 10, we introduce the Lévy noise-driven Langevin equation and the
fractional Fokker–Planck equations, derive the short-time propagator of Lévy
noise-driven processes, and provide limit theorems for Wiener and Lévy processes.
Finally, a non-parametric determination of Lévy noise-driven Langevin dynamics
from time series will be described. In Chap. 11, we study stochastic processes with
jump discontinuities and discuss the meaning of nonvanishing higher-order
Kramers–Moyal coefficients. We address in detail the physical meaning of
non-vanishing fourth-order Kramers–Moyal coefficients, stochastic processes with
jumps, as well as stochastic properties and statistical moments of Poisson jump
processes. In Chap. 12, we introduce the jump-diffusion processes with Gaussian
and mixed-Gaussian jumps. In Chap. 13, we introduce bi-variant jump-diffusion
equations and in Chap. 14, we describe different numerical schemes for the inte-
gration of Langevin and jump-diffusion stochastic differential equations, such as the
Euler–Maruyama scheme, the Milstein scheme, and Runge-Kutta-like methods.
This chapter closes with an introduction of packages in R and Python for the
numerical integration of stochastic differential equations. In Chap. 15, we discuss
the analysis of spatially disordered structures and provide a physical picture
of the fluctuation cascade from large to small scales. Moreover, this section
introduces the multipliers in cascade processes, and we derive a scale-dependent
solution of the Fokker–Planck equation and present the Castaing equation.
An answer to the question of how to set up stochastic equations for real-world
processes is presented in Chaps. 16–21. In Chap 16, the reader is familiarized with
the methods for estimating the Kramers–Moyal coefficients, and we introduce the
Markov–Einstein time (length) scale of a data set. This chapter also contains
important technical aspects of the method for estimating drift and diffusion coef-
ficients as well as higher-order Kramers–Moyal coefficients from time series. In
Chap. 17, we explain how to derive the Kramers–Moyal coefficients from
non-stationary time series using the Nadaraya–Watson estimator and we investigate
Kramers–Moyal coefficients in the presence of microstructure (measurement) noise.
In Chap. 18, we study the influence of a finite time step on the estimation of the
Kramers–Moyal coefficients from diffusive and jumpy data. In Chap. 19, we ana-
lytically derive a criterion (as a necessary condition) that allows one to check
whether for a given, even noisy time series the underlying process has a continuous
(diffusive) or a discontinuous (jumpy) trajectory. In Chap. 20, the steps of deriving
a Langevin equation from diffusive experimental time series are given, and we
finish the chapter with an introduction of an R Package for the modeling of one- and
two-dimensional continuous stochastic processes. In addition, the steps for deriving
a jump-diffusion stochastic equation from experimental time series with jumps are
presented. Also, two other methods for a reconstruction of time series will be
reviewed shortly. In Chap. 21 we reconstruct, as examples, some stochastic
dynamical equations from various synthetic continuous time series, from time series
with jump discontinuities and from time series generated by Lévy noise-driven
Langevin dynamics.
x Preface
1 Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 1
1.1 Time Series of Complex Systems . . . . . . . . . . . . . . . . . . . . . . 1
1.2 Stochastic Continuous Time Series . . . . . . . . . . . . . . . . . . . . . 2
1.3 Time Series with Jump Discontinuity . . . . . . . . . . . . . . . . . . . . 4
1.4 Microstructural (Measurement) Noise . . . . . . . . . . . . . . . . . . . . 5
1.5 Intermittency . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 5
References . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 7
2 Introduction to Stochastic Processes . . . . . . . . . . . . . . . . . . . . . . . . 9
2.1 Introduction . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 9
2.2 Statistical Description of Time Series . . . . . . . . . . . . . . . . . . . . 10
2.2.1 The Probability Density . . . . . . . . . . . . . . . . . . . . . . . 11
2.2.2 Joint and Conditional Probability Distribution
Functions . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 12
2.3 Classification of Stochastic Processes . . . . . . . . . . . . . . . . . . . . 12
2.3.1 Purely Random Processes . . . . . . . . . . . . . . . . . . . . . . 13
2.3.2 Markov Processes . . . . . . . . . . . . . . . . . . . . . . . . . . . . 13
2.3.3 Higher Order Processes . . . . . . . . . . . . . . . . . . . . . . . 14
2.4 Stationary Processes . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 14
2.5 The Chapman–Kolmogorov Equation and the Necessary
Condition for a Process to Be Markov . . . . . . . . . . . . . . . . . . . 15
2.6 Continuous Stochastic Markov Processes . . . . . . . . . . . . . . . . . 16
Problems . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 16
References . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . 18
3 Kramers–Moyal Expansion and Fokker–Planck Equation ....... 19
3.1 Kramers–Moyal Expansion . . . . . . . . . . . . . . . . . . . . ....... 19
3.2 Pawula Theorem and Fokker–Planck Equation . . . . . . ....... 21
3.3 Short-Time Propagator of Fokker–Planck Equation
in One Dimension . . . . . . . . . . . . . . . . . . . . . . . . . . . ....... 22
xi
xii Contents
Complex systems are composed of a large number of subsystems that may interact
with each other. The typically nonlinear and multiscale interactions often lead to
large-scale behaviors, which are not easily predicted from the knowledge of only the
behavior of individual subsystems. Such large-scale collective emergent behaviors
may be desired or undesired. Examples of undesired emergent behaviors include
short- and long-term climate changes, hurricanes, cascading failures, and epileptic
seizures. Among the desired ones are evolution, adaptation, learning, and intelli-
gence, to name just a few [1–11].
In complex systems the fluctuations stemming from the microscopic degrees of
freedom play a fundamental role in introducing temporal variations on a fast time
scale that, quite often, can be treated as short-time correlated source of fluctuations.
In such systems, self-organized behaviour arises due to the emergence of collective
variables, or order parameters that, compared to the time or length scales of the micro-
scopic subsystems, vary on slower temporal and larger spatial scales. The interaction
of the order parameters are typically nonlinear, with the microscopic degrees of free-
dom showing up in the fluctuations that participate in the order parameter dynamics
and results in complex time series; see Fig. 1.1. Thus, the analysis of the behaviour of
complex systems must be based on the assessment of the nonlinear mutual interac-
tions, as well as the determination of the characteristics and strength of the fluctuating
forces. This immediately leads to the problem of retrieving a stochastic dynamical
system from data; see Fig. 1.2 for typical stochastic time series.
Analysis of time series has a long history in the field of nonlinear dynamics
[12–16]. The problem of dynamical noise, i.e., fluctuations that interfere with the
dynamical evolution, has not been addressed in much details, although it is of utmost
importance for the analysis of strongly fluctuating time series [17, 18]. In this book,
we provide detailed description and discussion of a non-parametric method, known
as the reconstruction method, which has been developed for analyzing continuous
stochastic processes and stochastic data with jumps in time and/or length scales.
© Springer Nature Switzerland AG 2019 1
M. R. Rahimi Tabar, Analysis and Data-Based Reconstruction of Complex Nonlinear
Dynamical Systems, Understanding Complex Systems,
https://doi.org/10.1007/978-3-030-18472-8_1
2 1 Introduction
Fig. 1.1 Complex systems are composed of a large number of subsystems behaving in a “col-
lective manner”. In such systems, which are far from equilibrium, “collectivity” arises due to
self-organization. It results in the formation of temporal, spatial, spatio-temporal and functional
structures. The state of the subsystems change over time and results in stochastic dynamics (as
shown for subsystem 8). The dynamics of order parameters in complex systems are generally non-
stationary, and the subsystems interact with each other in nonlinear manner. The arrows indicate
causal directions of influence
with s > 0 and χ > 0. The KM coefficients are defined as D(j) (x) = limdt→0 j!1 dt1
K (j) (x), where the conditional moments K (j) (x) = [x(t + dt) − x(t)]j |x(t)=x , and
can be determined non-parametrically, i.e., directly form the measured time series
[17]. Throughout this book we will use two definitions for the KM coefficients,
D(j) (x) and M (j) (x), which are related to each other by, D(j) (x) = 1/j! M (j) (x).
The dynamics of continuous stochastic processes is governed by the Langevin
dynamics that has the following expression [24–26],
where {W (t), t ≥ 0} is a scalar Wiener (Brownian) motion, and the functions a(x, t)
and b2 (x, t)/2 are known as drift and diffusion coefficients, respectively. In terms of
the conditional probability distribution, a continuous Markov process x(t) satisfies
the following continuity condition, given some δ > 0 [25],
where Δx(t) = x(t + dt) − x(t). This means that jumps in the process are unlikely.
This condition is called Lindeberg’s continuity condition.
Generalization of Langevin dynamics for d -dimensional time series is straight-
forward. For d -dimensional continuous time series, a necessary ingredient of the
system under consideration is that its dynamical behavior should be described by a
set of macroscopic order parameters x(t) that are governed by the nonlinear Langevin
equations [17],
4 1 Introduction
d
x = a(x) + b(x) (t) (1.4)
dt
where x(t) denotes the d -dimensional state vector, a(x) the drift vector, and the
matrix b(x) isrelated to the diffusion matrix (second-order KM matrix) according
to, Dij(2) (x) = dk=1 bik (x) bjk (x). The noise terms l (t), lumped together in the vector
(t), are fluctuating forces with Gaussian statistics and rapidly decaying temporal
correlations, such that delta-correlation in time can be assumed, i.e., (t) = 0, and,
l (t)k (t ) = δlk δ(t − t ).
In Eq. (1.2) for smooth functions a(x, t) and b(x, t), the process x(t) is diffusion
process and has continuous trajectory. In general, non-vanishing C in Eq. (1.3) or non-
vanishing higher order KM coefficients indicate that a measured time series does not
belong to the class of continuous diffusion processes; see Chap. 12. Accordingly, an
improvement of the Langevin-type modeling, i.e. Eq. (1.2), is needed. An important
generalization of the Langevin-type modeling is to include jump processes, also
known as the jump-diffusion processes, with properties that can also be determined
from measured time series. The jump-diffusion processes are given by dynamical
stochastic equation:
where {W (t), t ≥ 0} is again a scalar Wiener process, a(x, t) and b(x, t) are the drift
and multiplicative diffusion functions, respectively, and J (t) is a time-homogeneous
Poisson jump process. The jump has state-dependent rate λ(x) and jump size ξ
according to some distribution with variance σξ2 . We assume that ξ has Gaussian dis-
tribution, or follows any symmetric distribution with finite moments. This represents
the minimal modeling of a measured time series that contains jumps. In general, one
may assume any distributions for the jump events. In this book, also we will describe
how one models the jumps characteristics—its rate and variance σξ2 —with mixed
Gaussian jumps, where the variance is distributed according to a Gamma distribution.
We describe in Chap. 12 how all the unknown functions and coefficients in Eq. (1.5)
are determined/computed directly from measured time series. Two typical trajec-
tories corresponding to continuous (Brownian type) process and stochastic process
with jumps are shown in Fig. 1.3. Jumps with amplitudes ξ1 and ξ2 are marked with
arrows.
In Chap. 18, we demonstrate that sampling at discrete times gives rise to nonvan-
ishing higher-order conditional moments K (j) (x) with j > 2, even if the underlying
path is continuous. In Chap. 19 we will derive analytically a criterion that allows one
to check whether for a given, even noisy time series the underlying process has a
continuous (diffusive) or jumpy trajectories.
1.4 Microstructural (Measurement) Noise 5
A measured time series may also contain some other noise, which is not assimilated
by the stochastic process. In this case, the time series is written as y(t) = x(t) + (t),
where x(t) denotes the pure stochastic variable, and (t) is an additional noise that
is assumed to be a short-range correlated noise and statistically independent of x(t).
In general, such noise may have its origin in intrinsic components of the complex
dynamics, or can be caused by an external disturbance, e.g., that added to the time
series by the measurement process.
In the literature, such spoiling noise is called differently, either as observational
or measurement noise, or as microstructural noise; an example is in the financial
sciences. The method described in this book is also able to separate and determine the
stochastic behavior of the pure stochastic variable x(t) and the statistical parameters
of the noise (t), such as its variance and higher order statistical moments, etc.
Therefore, we will be able to estimate precisely the “noise” contributions in a given
time series. The microstructural noise is closely linked to the so-called Epps effect
of financial data. Epps observed that there is a dramatic drop of the absolute value
of correlations among stocks, when the sampling frequency increases. In such short
time scales the noise (t) contributes much to the dynamics of y(t) and, due to its
strong fluctuations over short time scales, the predictability of y(t) is decreased. We
note that generally, an original series x(t) has slower dynamics.
1.5 Intermittency
It turns out that the non-parametric method of analysis can also be successfully
applied to not only fluctuating time series, but also to the analysis of spatio-temporal
disordered systems, such as fluid turbulence [18, 19], or characterization of rough
surfaces [27], and the porosity distributions in large-scale porous media. Such struc-
tures can be analyzed as scale-dependent stochastic processes. Experimental observ-
6 1 Introduction
Fig. 1.4 Probability distribution functions (PDF) of the increment statistics, p(Δr x, r) for wind
power fluctuations. Continuous deformation of the increments’ PDFs for time lags r = 1, 10, 1000
sec in log-linear scale are shown. For better clarity the PDFs have been shifted in the vertical
direction, and Δr x’s are measured in units of their standard deviation σr . Extreme events up to about
20σr=1 are recorded. A Gaussian PDF with unit variance is plotted for comparison. The method
described in Chap. 15 provides an evolution equation for the change of the shape or deformation of
the PDF of p(Δr x, r) with respect to scale r. Source from [28]
ables include the field increments, i.e., the difference in the field between two points
separated by a distance or lag r, Δr x(t) = x(t + r) − x(t). The change of the incre-
ments as a function of the scale r can then be viewed as a stochastic process over a
length scale. The method described in this book provides an evolution equation for
the change of shape or deformation of the probability distribution function (PDF) of
p(Δr x, r) with respect to scale r; see Fig. 1.4.
To study the fractal and multifractal behavior of given time series, the approach
can be viewed as an extension of the multifractal description of stochastic pro-
cesses [17]. The multifractal description focusses on the scaling behavior of the
moments of quantities of interest, such as velocity or temperature increments, as a
function of the scale. The complete information on an increment, Δr x(t), is con-
tained in the probability distribution function (PDF) p(Δr x, r) for a certain scale r.
For a self-similar process, it is assumed that the increments exhibit
∞ scaling behavior,
Δr x ≈ r ξ , which means p(Δr x, r) = p̃(Δr x/r ξ )/r ξ , where −∞ p̃(u)du = 1. With
locally-varying scaling exponent ξ the PDF is constructed as a superposition of the
probability distributions
1
p(Δr x, r) = dξ p̃(Δr x/r ξ ) f (ξ, r) , (1.6)
rξ
where the measure f (ξ, r) characterizes the distribution of the regions with different
scaling behavior. Knowledge of the deformation equation for p(Δr x, r) with respect
to the scale r enables one to study the scaling exponents of increments for given time
series; see Chap. 15.
1.5 Intermittency 7
References
4. Stability.
It has been stated that the properly constructed airship is stable
when in the air; it has not got to fear the more treacherous side gust
which over and over again has brought the aëroplane to earth, and
coupled its name with tragedy. The vexed problem of the stability
and equilibrium of aëroplanes is the most important that has yet to
be solved; until this is done it is not likely the airship will completely
disappear as an instrument of war. In speaking of the remarkable
exploits of Pégoud, it was said that they were an object-lesson on
the materiality of the air, and we have yet to learn how to use this
materiality to the best advantage, so as to afford us continual
stability. Until the problem is solved, man cannot be said to have
brought himself to the level of the soaring bird; the latter, indeed,
makes good use of the very attributes of the wind which at present
tend to upset the aëroplanist—the vertical component of the wind, its
internal work, i.e., its gustiness; its non-uniformity, i.e., its different
velocities at different levels. Every light, therefore, that can be thrown
experimentally or mathematically on the difficult subject of
equilibrium and stability should be eagerly sought.
Professor G. H. Bryan’s mathematical researches are indeed
epoch-making, and their study by the aëronautical engineer should
be prolific of practical result. He does much to elucidate points of the
problem of stability that before had been imperfectly grasped. For
instance, take the case of his remarks as to distinction between
equilibrium and stability.
1. Automatic stability.
2. Inherent stability.
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