# --- full sequence

---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_185699||full_2 - TIGR01447 TIGR01447 0.0001 14.7
0.1 0.00011 14.6 0.1 1.0 1 0 0 1 1 1 1 # 138 # 419 # -1 #
ID=32_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.521
k141_204||full_2 - TIGR01524 TIGR01524 3.7e-10 31.9
0.0 3.7e-10 31.9 0.0 1.1 1 0 0 1 1 1 1 # 159 # 395 # 1 #
ID=19_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.274
k141_185699||full_2 - TIGR01613 TIGR01613 0.00069 12.2
0.0 0.00071 12.2 0.0 1.1 1 0 0 1 1 1 1 # 138 # 419 # -1 #
ID=32_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.521
k141_309674||full_2 - TIGR01613 TIGR01613 0.0017 10.9
0.2 0.0022 10.6 0.2 1.1 1 0 0 1 1 1 1 # 160 # 453 # 1 #
ID=68_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.303
k141_124399||full_2 - TIGR01613 TIGR01613 0.0024 10.4
0.0 0.0032 10.0 0.0 1.1 1 0 0 1 1 1 1 # 341 # 574 # -1 #
ID=54_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.496
k141_124523||full_1 - TIGR01747 TIGR01747 0.00071 12.1
0.0 0.00077 12.0 0.0 1.1 1 0 0 1 1 1 1 # 1 # 270 # 1 #
ID=63_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.359
k141_62056||full_2 - TIGR01777 TIGR01777 0.00095 12.5
0.0 0.00098 12.5 0.0 1.0 1 0 0 1 1 1 1 # 146 # 343 # -1 #
ID=27_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.505
k141_247701||full_2 - TIGR01915 TIGR01915 0.00079 13.2
0.5 0.00083 13.1 0.5 1.0 1 0 0 1 1 1 1 # 713 # 838 # 1 #
ID=43_2;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=3bp;genetic_code=11;gc_c
ont=0.508
k141_123679||full_1 - TIGR02225 TIGR02225 2.1e-18 60.4
0.0 2.6e-18 60.0 0.0 1.0 1 0 0 1 1 1 1 # 1 # 396 # -1 #
ID=5_1;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.379
k141_185451||full_2 - TIGR02231 TIGR02231 0.00051 12.5
1.3 0.00054 12.4 1.3 1.0 1 0 0 1 1 1 1 # 616 # 762 # 1 #
ID=4_2;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.483
k141_309146||full_2 - TIGR02495 TIGR02495 0.00025 14.1
0.2 0.00029 13.9 0.2 1.1 1 0 0 1 1 1 1 # 343 # 588 # -1 #
ID=10_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.598
k141_247655||full_2 - TIGR02612 TIGR02612 0.00032 14.3
0.0 0.00036 14.2 0.0 1.0 1 0 0 1 1 1 1 # 290 # 433 # 1 #
ID=39_2;partial=01;start_type=ATG;rbs_motif=TATA;rbs_spacer=7bp;genetic_code=11;gc_
cont=0.403
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/21.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/21.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/21.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:32:12 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_247850||full_2 - K00571 - 1.7e-17 57.3
0.1 1.7e-17 57.3 0.1 1.0 1 0 0 1 1 1 1 # 144 # 353 # -1 #
ID=58_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.352
k141_62410||full_3 - K00641 - 0.0011 11.5
0.0 0.0011 11.5 0.0 1.0 1 0 0 1 1 1 1 # 481 # 798 # -1 #
ID=62_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.481
k141_62410||full_1 - K00641 - 0.002 10.6
0.0 0.0022 10.5 0.0 1.0 1 0 0 1 1 1 1 # 1 # 198 # 1 #
ID=62_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.444
k141_124399||full_2 - K00791 - 8.8e-05 15.2
0.0 9.4e-05 15.1 0.0 1.1 1 0 0 1 1 1 1 # 341 # 574 # -1 #
ID=54_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.496
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/24.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/24.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/24.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:32:34 2024
# [ok]
#
--- full sequence ---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name
accession E-value score bias E-value score bias exp reg clu ov env dom
rep inc description of target
#------------------- ---------- --------------------
---------- --------- ------ ----- --------- ------ ----- --- --- --- --- --- ---
--- --- ---------------------
k141_124408||full_2 -
3300001722@JGI24525J20082_1000037@JGI24525J20082_100003753 - 0.00017
15.4 0.0 0.00017 15.4 0.0 1.0 1 0 0 1 1 1 1 # 142 # 306 # -
1 #
ID=55_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=4;gc
_cont=0.400
k141_309668||lt2gene_2 -
7000000028@SRS024138_Baylor_scaffold_5948@SRS024138_Baylor_scaffold_5948_gene_6575
- 9.3e-05 15.9 0.1 0.00016 15.2 0.1 1.4 1 0 0 1 1
1 1 # 193 # 435 # -1 #
ID=101_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;
gc_cont=0.449
k141_309668||lt2gene_2 -
7000000144@SRS045715_LANL_scaffold_90836@SRS045715_LANL_scaffold_90836_gene_130056
- 0.0001 15.6 0.2 0.00016 15.0 0.2 1.4 1 0 0 1 1
1 1 # 193 # 435 # -1 #
ID=101_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;
gc_cont=0.449
k141_248126||full_1 -
7000000171@SRS052697_LANL_scaffold_51535@SRS052697_LANL_scaffold_51535_gene_98396 -
7.4e-10 32.9 0.1 8.9e-10 32.6 0.1 1.1 1 0 0 1 1 1 1 # 1 #
408 # 1 #
ID=80_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=4;gc
_cont=0.348
k141_247546||lt2gene_2 -
7000000246@SRS078176_LANL_scaffold_6356@SRS078176_LANL_scaffold_6356_gene_14188 -
2.6e-10 32.3 0.1 2.9e-10 32.1 0.1 1.0 1 0 0 1 1 1 1 # 155
# 466 # -1 #
ID=88_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.340
k141_247546||lt2gene_1 -
7000000246@SRS078176_LANL_scaffold_6356@SRS078176_LANL_scaffold_6356_gene_14188 -
1.6e-07 23.1 0.1 1.7e-07 23.0 0.1 1.0 1 0 0 1 1 1 1 # 2 #
196 # 1 #
ID=88_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.308
k141_124576||full_3 -
7000000292@SRS023958_Baylor_scaffold_31592@SRS023958_Baylor_scaffold_31592_gene_427
36 - 0.00023 13.7 0.0 0.00024 13.7 0.0 1.0 1 0 0 1
1 1 1 # 338 # 487 # 1 #
ID=66_3;partial=01;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.520
k141_309499||full_1 -
7000000292@SRS023958_Baylor_scaffold_31592@SRS023958_Baylor_scaffold_31592_gene_427
36 - 0.00038 13.0 0.2 0.00039 13.0 0.2 1.0 1 0 0 1
1 1 1 # 260 # 469 # -1 #
ID=46_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.233
k141_185674||lt2gene_1 -
7000000484@SRS016018_WUGC_scaffold_13@SRS016018_WUGC_scaffold_13_gene_53 -
0.0005 13.3 0.5 0.00071 12.8 0.5 1.2 1 0 0 1 1 1 1 # 3 #
482 # -1 #
ID=90_1;partial=10;start_type=ATG;rbs_motif=TAA;rbs_spacer=15bp;genetic_code=11;gc_
cont=0.427
k141_62468||full_1 - ACB97569@CP000917 - 5e-05 17.4
0.0 6.6e-05 17.0 0.0 1.2 1 0 0 1 1 1 1 # 1 # 249 # 1 #
ID=69_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.434
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/67.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/67.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/67.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:32:10 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_185589||lt2gene_2 - GYD PF08734.11 0.00034 14.4
0.2 0.001 12.9 0.1 1.8 2 0 0 2 2 2 1 # 334 # 1101 # 1 #
ID=86_2;partial=01;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.553
k141_204||full_2 - Hydrolase PF00702.26 0.00067 13.8
0.5 0.0013 12.9 0.4 1.5 2 0 0 2 2 2 1 # 159 # 395 # 1 #
ID=19_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.274
k141_62468||full_1 - HYR PF02494.16 3.6e-05 17.9
0.7 4.9e-05 17.5 0.7 1.3 1 1 0 1 1 1 1 # 1 # 249 # 1 #
ID=69_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.434
k141_124224||full_2 - KH_2 PF07650.17 9.2e-09 28.9
1.2 1.7e-08 28.0 1.2 1.4 1 0 0 1 1 1 1 # 186 # 539 # 1 #
ID=34_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=11-
12bp;genetic_code=11;gc_cont=0.472
k141_247746||full_1 - KH_2 PF07650.17 0.00015 15.4
0.0 0.00017 15.2 0.0 1.2 1 0 0 1 1 1 1 # 1 # 192 # 1 #
ID=53_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.375
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/8.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/8.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/8.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:33:16 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_124118||full_1 - K02992 - 0.001 12.4
0.1 0.0015 11.9 0.1 1.2 1 0 0 1 1 1 1 # 1 # 441 # -1 #
ID=30_1;partial=10;start_type=ATG;rbs_motif=ATA;rbs_spacer=8bp;genetic_code=11;gc_c
ont=0.408
k141_185699||full_2 - K03112 - 0.0013 12.0
0.0 0.0013 12.0 0.0 1.0 1 0 0 1 1 1 1 # 138 # 419 # -1 #
ID=32_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.521
k141_247495||full_1 - K03164 - 2.3e-06 19.1
0.0 2.4e-06 19.0 0.0 1.0 1 0 0 1 1 1 1 # 1 # 339 # 1 #
ID=23_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.383
k141_62376||full_2 - K03164 - 2.5e-06 19.0
1.7 2.6e-06 18.9 1.7 1.0 1 0 0 1 1 1 1 # 213 # 428 # 1 #
ID=60_2;partial=00;start_type=TTG;rbs_motif=AGGAG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.500
k141_62376||full_1 - K03164 - 0.00016 13.0
0.3 0.00016 13.0 0.3 1.0 1 0 0 1 1 1 1 # 1 # 105 # -1 #
ID=60_1;partial=10;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.505
k141_124576||full_3 - K03269 - 4.3e-13 42.7
0.3 4.6e-13 42.6 0.3 1.0 1 0 0 1 1 1 1 # 338 # 487 # 1 #
ID=66_3;partial=01;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.520
k141_309499||full_1 - K03269 - 0.00099 11.9
0.1 0.0011 11.8 0.1 1.1 1 0 0 1 1 1 1 # 260 # 469 # -1 #
ID=46_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.233
k141_507||full_1 - K03326 - 0.00025 13.5
0.0 0.00026 13.5 0.0 1.1 1 0 0 1 1 1 1 # 1 # 216 # -1 #
ID=40_1;partial=10;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=15;gc
_cont=0.412
k141_185699||full_2 - K03404 - 0.0002 13.8
0.0 0.00023 13.6 0.0 1.0 1 0 0 1 1 1 1 # 138 # 419 # -1 #
ID=32_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.521
k141_248025||full_1 - K03546 - 1.4e-05 17.3
0.0 1.5e-05 17.3 0.0 1.0 1 0 0 1 1 1 1 # 1 # 276 # 1 #
ID=71_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.576
k141_247700||full_2 - K03546 - 0.0001 14.5
0.1 0.0001 14.5 0.1 1.0 1 0 0 1 1 1 1 # 198 # 476 # -1 #
ID=42_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.502
k141_124399||full_2 - K03546 - 0.0016 10.5
0.0 0.0016 10.5 0.0 1.0 1 0 0 1 1 1 1 # 341 # 574 # -1 #
ID=54_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.496
k141_309499||full_1 - K03547 - 6.8e-06 19.1
0.0 7.1e-06 19.0 0.0 1.0 1 0 0 1 1 1 1 # 260 # 469 # -1 #
ID=46_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.233
k141_186136||full_1 - K03551 - 1.5e-05 17.6
0.0 1.7e-05 17.4 0.0 1.1 1 0 0 1 1 1 1 # 1 # 354 # -1 #
ID=77_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.571
k141_186136||full_1 - K03556 - 0.0019 10.6
0.0 0.002 10.6 0.0 1.0 1 0 0 1 1 1 1 # 1 # 354 # -1 #
ID=77_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.571
k141_556||full_2 - K03594 - 5.3e-08 26.4
0.6 5.4e-08 26.3 0.6 1.0 1 0 0 1 1 1 1 # 202 # 399 # 1 #
ID=52_2;partial=00;start_type=ATG;rbs_motif=TAAA;rbs_spacer=11bp;genetic_code=11;gc
_cont=0.465
k141_124224||full_3 - K03596 - 5.4e-05 14.9
0.0 5.5e-05 14.9 0.0 1.0 1 0 0 1 1 1 1 # 452 # 637 # -1 #
ID=34_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.484
k141_247700||full_2 - K03629 - 3.7e-05 16.4
0.0 4e-05 16.3 0.0 1.2 1 0 0 1 1 1 1 # 198 # 476 # -1 #
ID=42_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.502
k141_62047||full_1 - K03667 - 1.2e-05 17.9
0.0 1.5e-05 17.6 0.0 1.0 1 0 0 1 1 1 1 # 1 # 231 # -1 #
ID=25_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.532
k141_124399||full_2 - K03667 - 0.00018 14.0
0.0 0.0002 13.9 0.0 1.0 1 0 0 1 1 1 1 # 341 # 574 # -1 #
ID=54_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.496
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/27.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/27.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/27.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:32:40 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_62410||full_1 - Oxidored_nitro PF00148.19 0.0016 11.0
0.0 0.0016 11.0 0.0 1.0 1 0 0 1 1 1 1 # 1 # 198 # 1 #
ID=62_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.444
k141_62410||full_3 - Oxidored_nitro PF00148.19 0.0019 10.7
0.0 0.0019 10.7 0.0 1.1 1 0 0 1 1 1 1 # 481 # 798 # -1 #
ID=62_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.481
k141_309160||full_2 - Phage_CII PF05269.11 0.00031 14.8
0.0 0.00054 14.0 0.0 1.4 1 1 0 1 1 1 1 # 204 # 443 # -1 #
ID=11_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.463
k141_309160||full_1 - Phage_CII PF05269.11 0.00095 13.2
0.0 0.00096 13.2 0.0 1.1 1 0 0 1 1 1 1 # 1 # 168 # 1 #
ID=11_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.488
k141_185496||full_2 - PIN PF01850.21 0.0015 12.9
0.0 0.0026 12.1 0.0 1.3 1 0 0 1 1 1 1 # 122 # 382 # -1 #
ID=9_2;partial=00;start_type=GTG;rbs_motif=4Base/6BMM;rbs_spacer=13-
15bp;genetic_code=11;gc_cont=0.552
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/10.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/10.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/10.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:32:30 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_62056||full_2 - K06118 - 0.00071 12.3
0.0 0.00075 12.2 0.0 1.1 1 0 0 1 1 1 1 # 146 # 343 # -1 #
ID=27_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.505
k141_309146||full_2 - K06139 - 0.001 11.4
0.4 0.0012 11.2 0.4 1.0 1 0 0 1 1 1 1 # 343 # 588 # -1 #
ID=10_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.598
k141_185496||full_2 - K06142 - 0.0006 13.4
0.1 0.00061 13.4 0.1 1.1 1 0 0 1 1 1 1 # 122 # 382 # -1 #
ID=9_2;partial=00;start_type=GTG;rbs_motif=4Base/6BMM;rbs_spacer=13-
15bp;genetic_code=11;gc_cont=0.552
k141_124377||full_3 - K06409 - 0.00013 14.3
0.8 0.00013 14.3 0.8 1.0 1 0 0 1 1 1 1 # 636 # 803 # 1 #
ID=51_3;partial=01;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.452
k141_185699||full_2 - K06714 - 0.00019 13.9
0.0 0.00022 13.7 0.0 1.1 1 0 0 1 1 1 1 # 138 # 419 # -1 #
ID=32_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.521
k141_62145||lt2gene_1 - K06904 - 9.7e-13 42.1
0.0 1.1e-12 42.0 0.0 1.1 1 0 0 1 1 1 1 # 3 # 362 # -1 #
ID=91_1;partial=10;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.531
k141_124562||lt2gene_2 - K06907 - 4.2e-06 19.4
0.0 4.7e-06 19.2 0.0 1.0 1 0 0 1 1 1 1 # 132 # 407 # 1 #
ID=100_2;partial=01;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.442
k141_124399||full_2 - K06915 - 0.00048 12.6
0.0 0.00048 12.6 0.0 1.0 1 0 0 1 1 1 1 # 341 # 574 # -1 #
ID=54_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.496
k141_185699||full_2 - K06925 - 0.00019 15.0
0.0 0.00022 14.8 0.0 1.1 1 0 0 1 1 1 1 # 138 # 419 # -1 #
ID=32_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.521
k141_185699||full_2 - K06945 - 0.00024 14.2
0.1 0.00026 14.1 0.1 1.1 1 0 0 1 1 1 1 # 138 # 419 # -1 #
ID=32_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.521
k141_62047||full_1 - K06945 - 0.00078 12.6
0.0 0.00078 12.6 0.0 1.1 1 0 0 1 1 1 1 # 1 # 231 # -1 #
ID=25_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.532
k141_309499||full_1 - K06953 - 9.7e-07 22.1
0.0 1e-06 22.0 0.0 1.0 1 0 0 1 1 1 1 # 260 # 469 # -1 #
ID=46_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.233
k141_62410||full_3 - K07000 - 6.1e-33 107.9
0.0 6.9e-33 107.7 0.0 1.0 1 0 0 1 1 1 1 # 481 # 798 # -1 #
ID=62_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.481
k141_62410||full_1 - K07000 - 1.2e-14 48.0
0.0 1.4e-14 47.8 0.0 1.0 1 0 0 1 1 1 1 # 1 # 198 # 1 #
ID=62_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.444
k141_62410||full_4 - K07000 - 1.3e-08 28.2
0.2 1.3e-08 28.2 0.2 1.1 1 0 0 1 1 1 1 # 839 # 952 # 1 #
ID=62_4;partial=01;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.447
k141_62410||full_2 - K07000 - 4.7e-05 16.6
0.0 5.8e-05 16.3 0.0 1.1 1 0 0 1 1 1 1 # 359 # 580 # 1 #
ID=62_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.446
k141_124399||full_2 - K07028 - 0.0015 11.1
0.0 0.0015 11.1 0.0 1.0 1 0 0 1 1 1 1 # 341 # 574 # -1 #
ID=54_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.496
k141_185699||full_2 - K07028 - 0.002 10.7
0.0 0.0024 10.4 0.0 1.0 1 0 0 1 1 1 1 # 138 # 419 # -1 #
ID=32_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.521
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/29.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/29.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/29.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:32:25 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_124224||full_3 - TIGR03680 TIGR03680 2.8e-05 17.2
0.0 3.2e-05 17.0 0.0 1.0 1 0 0 1 1 1 1 # 452 # 637 # -1 #
ID=34_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.484
k141_510||lt2gene_1 - TIGR04015 TIGR04015 0.0011 11.8
0.0 0.0015 11.4 0.0 1.2 1 0 0 1 1 1 1 # 1 # 843 # 1 #
ID=94_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.654
k141_309160||full_1 - TIGR04285 TIGR04285 0.00081 12.5
0.1 0.00083 12.5 0.1 1.0 1 0 0 1 1 1 1 # 1 # 168 # 1 #
ID=11_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.488
k141_309146||full_2 - TIGR04349 TIGR04349 0.0013 12.1
0.9 0.0014 12.0 0.9 1.1 1 0 0 1 1 1 1 # 343 # 588 # -1 #
ID=10_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.598
k141_247999||full_2 - TIGR04387 TIGR04387 2.3e-10 33.9
0.0 2.5e-10 33.8 0.0 1.0 1 0 0 1 1 1 1 # 562 # 696 # -1 #
ID=67_2;partial=00;start_type=ATG;rbs_motif=ATA;rbs_spacer=7bp;genetic_code=11;gc_c
ont=0.511
k141_247286||full_2 - TIGR04387 TIGR04387 2.3e-08 27.4
0.0 2.7e-08 27.1 0.0 1.0 1 0 0 1 1 1 1 # 106 # 342 # -1 #
ID=3_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.629
k141_247999||full_1 - TIGR04387 TIGR04387 3.6e-08 26.7
0.1 3.9e-08 26.6 0.1 1.0 1 0 0 1 1 1 1 # 1 # 195 # 1 #
ID=67_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.508
k141_247678||lt2gene_2 - TIGR04387 TIGR04387 2.8e-05 17.2
0.1 2.9e-05 17.2 0.1 1.0 1 0 0 1 1 1 1 # 326 # 487 # 1 #
ID=93_2;partial=01;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.414
k141_247286||full_1 - TIGR04387 TIGR04387 0.0014 11.7
0.0 0.0015 11.6 0.0 1.0 1 0 0 1 1 1 1 # 1 # 105 # 1 #
ID=3_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.610
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/23.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/23.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/23.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:33:33 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_185699||full_2 - FAM002588 - 0.0015 11.6
0.0 0.0017 11.5 0.0 1.1 1 0 0 1 1 1 1 # 138 # 419 # -1 #
ID=32_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.521
k141_62056||full_2 - FAM002599 - 7.1e-15 48.8
0.0 7.6e-15 48.7 0.0 1.0 1 0 0 1 1 1 1 # 146 # 343 # -1 #
ID=27_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.505
k141_247649||full_1 - FAM002599 - 9.1e-06 18.9
0.1 9.5e-06 18.8 0.1 1.0 1 0 0 1 1 1 1 # 161 # 379 # -1 #
ID=38_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.521
k141_62056||full_1 - FAM002599 - 9.5e-06 18.8
0.1 9.7e-06 18.8 0.1 1.0 1 0 0 1 1 1 1 # 1 # 153 # 1 #
ID=27_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.523
k141_185469||lt2gene_1 - FAM002716 - 1.7e-09 31.3
0.1 1.7e-09 31.3 0.1 1.0 1 0 0 1 1 1 1 # 3 # 158 # 1 #
ID=82_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.571
k141_248079||full_2 - FAM002752 - 0.0016 12.6
12.5 0.0013 12.9 11.1 1.6 1 1 0 1 1 1 1 # 267 # 695 # 1 #
ID=73_2;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.361
k141_247655||full_2 - FAM002929 - 2.5e-07 24.8
0.0 2.5e-07 24.8 0.0 1.0 1 0 0 1 1 1 1 # 290 # 433 # 1 #
ID=39_2;partial=01;start_type=ATG;rbs_motif=TATA;rbs_spacer=7bp;genetic_code=11;gc_
cont=0.403
k141_309160||full_1 - FAM002929 - 1.2e-06 22.6
0.0 1.3e-06 22.5 0.0 1.0 1 0 0 1 1 1 1 # 1 # 168 # 1 #
ID=11_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.488
k141_309160||full_2 - FAM002929 - 3.6e-06 21.1
0.0 4.4e-06 20.8 0.0 1.1 1 0 0 1 1 1 1 # 204 # 443 # -1 #
ID=11_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.463
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/77.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/77.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/77.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:31:50 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_309160||full_1 - VOG01480 - 0.00055 13.8
0.0 0.00058 13.8 0.0 1.0 1 0 0 1 1 1 1 # 1 # 168 # 1 #
ID=11_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.488
k141_248079||full_2 - VOG01484 - 1.1e-06 22.4
9.3 1.4e-06 22.0 9.3 1.1 1 0 0 1 1 1 1 # 267 # 695 # 1 #
ID=73_2;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.361
k141_185699||full_2 - VOG01499 - 4.2e-06 19.8
0.0 4.5e-06 19.7 0.0 1.0 1 0 0 1 1 1 1 # 138 # 419 # -1 #
ID=32_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.521
k141_309174||full_2 - VOG01553 - 8.3e-13 40.4
0.0 9.2e-13 40.2 0.0 1.0 1 0 0 1 1 1 1 # 307 # 828 # 1 #
ID=14_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-
12bp;genetic_code=11;gc_cont=0.431
k141_309674||full_2 - VOG01553 - 1.6e-07 22.8
0.3 1.7e-07 22.8 0.3 1.0 1 0 0 1 1 1 1 # 160 # 453 # 1 #
ID=68_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.303
k141_309674||full_1 - VOG01553 - 0.00067 10.9
0.2 0.00061 11.0 0.2 1.0 1 0 0 1 1 1 1 # 1 # 141 # -1 #
ID=68_1;partial=10;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.213
k141_185699||full_2 - VOG01553 - 0.0015 9.7
0.1 0.0018 9.4 0.1 1.1 1 0 0 1 1 1 1 # 138 # 419 # -1 #
ID=32_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.521
k141_124399||full_2 - VOG01553 - 0.0017 9.5
0.0 0.002 9.3 0.0 1.0 1 0 0 1 1 1 1 # 341 # 574 # -1 #
ID=54_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.496
k141_185674||lt2gene_1 - VOG01571 - 9.5e-24 77.7
3.0 1.7e-17 57.0 0.0 2.0 2 0 0 2 2 2 2 # 3 # 482 # -1 #
ID=90_1;partial=10;start_type=ATG;rbs_motif=TAA;rbs_spacer=15bp;genetic_code=11;gc_
cont=0.427
k141_510||lt2gene_1 - VOG01617 - 0.00022 14.1
0.0 0.00032 13.6 0.0 1.2 1 0 0 1 1 1 1 # 1 # 843 # 1 #
ID=94_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.654
k141_247655||full_2 - VOG01629 - 1.5e-06 21.5
0.0 1.5e-06 21.5 0.0 1.0 1 0 0 1 1 1 1 # 290 # 433 # 1 #
ID=39_2;partial=01;start_type=ATG;rbs_motif=TATA;rbs_spacer=7bp;genetic_code=11;gc_
cont=0.403
k141_309160||full_2 - VOG01629 - 0.00029 14.0
0.0 0.00036 13.8 0.0 1.0 1 0 0 1 1 1 1 # 204 # 443 # -1 #
ID=11_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.463
k141_309160||full_1 - VOG01629 - 0.00067 12.9
0.0 0.00076 12.7 0.0 1.0 1 0 0 1 1 1 1 # 1 # 168 # 1 #
ID=11_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.488
k141_309234||lt2gene_2 - VOG01659 - 8e-09 29.1
0.1 8.7e-09 29.0 0.1 1.0 1 0 0 1 1 1 1 # 309 # 593 # -1 #
ID=85_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.523
k141_309234||lt2gene_1 - VOG01659 - 3.7e-08 27.0
0.0 4.7e-08 26.6 0.0 1.1 1 0 0 1 1 1 1 # 1 # 426 # 1 #
ID=85_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.507
k141_309234||lt2gene_1 - VOG01660 - 1.1e-06 22.3
0.0 1.6e-06 21.8 0.0 1.2 1 0 0 1 1 1 1 # 1 # 426 # 1 #
ID=85_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.507
k141_309234||lt2gene_2 - VOG01660 - 9.9e-06 19.2
0.1 1.2e-05 18.9 0.1 1.2 1 0 0 1 1 1 1 # 309 # 593 # -1 #
ID=85_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.523
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/44.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/44.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/44.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:32:42 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/61.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/61.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/61.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:32:48 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_124029||full_3 - K01812 - 6.5e-11 35.5
0.0 6.8e-11 35.4 0.0 1.0 1 0 0 1 1 1 1 # 603 # 728 # 1 #
ID=26_3;partial=01;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.500
k141_61870||full_1 - K02016 - 0.00013 14.3
0.0 0.00014 14.2 0.0 1.0 1 0 0 1 1 1 1 # 1 # 420 # -1 #
ID=7_1;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc_
cont=0.476
k141_185578||full_1 - K02121 - 1.2 2.2
20.4 1.4 2.1 20.4 1.0 1 0 0 1 1 1 0 # 22 # 144 # -1 #
ID=20_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.415
k141_185699||full_2 - K02234 - 0.00067 12.3
0.1 0.00067 12.3 0.1 1.1 1 0 0 1 1 1 1 # 138 # 419 # -1 #
ID=32_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.521
k141_186136||full_1 - K02341 - 1.2e-18 61.8
0.1 1.3e-18 61.7 0.1 1.1 1 0 0 1 1 1 1 # 1 # 354 # -1 #
ID=77_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.571
k141_62056||full_2 - K02377 - 1.9e-06 20.7
0.0 2e-06 20.7 0.0 1.0 1 0 0 1 1 1 1 # 146 # 343 # -1 #
ID=27_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.505
k141_248031||full_2 - K02404 - 0.00082 11.9
0.0 0.0011 11.5 0.0 1.1 1 0 0 1 1 1 1 # 167 # 715 # 1 #
ID=72_2;partial=01;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.528
k141_62047||full_1 - K02404 - 0.0022 10.5
0.0 0.0023 10.5 0.0 1.0 1 0 0 1 1 1 1 # 1 # 231 # -1 #
ID=25_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.532
k141_62056||full_2 - K02473 - 0.002 10.9
0.0 0.002 10.9 0.0 1.0 1 0 0 1 1 1 1 # 146 # 343 # -1 #
ID=27_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.505
k141_185451||full_2 - K02664 - 0.00021 14.6
1.5 0.00023 14.5 1.5 1.0 1 0 0 1 1 1 1 # 616 # 762 # 1 #
ID=4_2;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.483
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/26.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/26.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/26.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:33:02 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_248079||full_2 - VOG02424 - 1.7e-05 17.7
1.5 1.7e-05 17.7 1.5 1.1 1 0 0 1 1 1 1 # 267 # 695 # 1 #
ID=73_2;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.361
k141_185699||full_2 - VOG02427 - 0.00059 12.7
0.2 0.00076 12.4 0.2 1.1 1 0 0 1 1 1 1 # 138 # 419 # -1 #
ID=32_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.521
k141_247655||full_2 - VOG02479 - 0.00013 15.6
0.0 0.00014 15.6 0.0 1.1 1 0 0 1 1 1 1 # 290 # 433 # 1 #
ID=39_2;partial=01;start_type=ATG;rbs_motif=TATA;rbs_spacer=7bp;genetic_code=11;gc_
cont=0.403
k141_124576||full_3 - VOG02513 - 6.7e-05 15.9
0.0 7.9e-05 15.7 0.0 1.1 1 0 0 1 1 1 1 # 338 # 487 # 1 #
ID=66_3;partial=01;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.520
k141_124576||full_1 - VOG02513 - 0.0014 11.6
0.0 0.0014 11.6 0.0 1.0 1 0 0 1 1 1 1 # 1 # 72 # -1 #
ID=66_1;partial=10;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.486
k141_309565||full_1 - VOG02612 - 0.00033 14.2
0.8 0.00067 13.2 0.1 1.8 2 0 0 2 2 2 1 # 1 # 480 # 1 #
ID=57_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.567
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/46.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/46.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/46.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:32:47 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_185640||full_2 - VOG03113 - 0.001 12.9
0.0 0.0012 12.7 0.0 1.2 1 0 0 1 1 1 1 # 394 # 678 # -1 #
ID=28_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.456
k141_62145||lt2gene_1 - VOG03134 - 0.0003 13.7
0.0 0.00035 13.5 0.0 1.1 1 0 0 1 1 1 1 # 3 # 362 # -1 #
ID=91_1;partial=10;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.531
k141_248079||full_2 - VOG03188 - 5e-06 18.6
16.1 6e-06 18.3 16.1 1.1 1 0 0 1 1 1 1 # 267 # 695 # 1 #
ID=73_2;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.361
k141_309174||full_2 - VOG03213 - 1.7e-18 59.8
0.0 2.2e-18 59.5 0.0 1.0 1 0 0 1 1 1 1 # 307 # 828 # 1 #
ID=14_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-
12bp;genetic_code=11;gc_cont=0.431
k141_185813||full_1 - VOG03282 - 0.00014 15.9
0.0 0.0002 15.3 0.0 1.3 1 0 0 1 1 1 1 # 1 # 303 # -1 #
ID=44_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.436
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/48.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/48.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/48.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:32:07 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_124399||full_2 - VOG00242 - 4.9e-05 16.2
0.0 4.9e-05 16.2 0.0 1.1 1 0 0 1 1 1 1 # 341 # 574 # -1 #
ID=54_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.496
k141_185699||full_2 - VOG00242 - 9.5e-05 15.3
0.0 9.5e-05 15.3 0.0 1.1 1 0 0 1 1 1 1 # 138 # 419 # -1 #
ID=32_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.521
k141_186136||full_1 - VOG00242 - 0.0014 11.4
0.1 0.0026 10.5 0.0 1.4 2 0 0 2 2 2 1 # 1 # 354 # -1 #
ID=77_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.571
k141_185699||full_2 - VOG00246 - 0.00051 13.4
0.1 0.00058 13.2 0.1 1.1 1 0 0 1 1 1 1 # 138 # 419 # -1 #
ID=32_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.521
k141_124224||full_1 - VOG00285 - 0.0018 10.9
0.0 0.0021 10.8 0.0 1.0 1 0 0 1 1 1 1 # 1 # 159 # 1 #
ID=34_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.547
k141_309679||full_1 - VOG00298 - 1.8e-06 21.2
0.2 1.9e-06 21.1 0.2 1.0 1 0 0 1 1 1 1 # 1 # 192 # 1 #
ID=70_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.312
k141_309499||full_1 - VOG00299 - 1.7e-07 22.9
0.1 1.9e-07 22.8 0.1 1.0 1 0 0 1 1 1 1 # 260 # 469 # -1 #
ID=46_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.233
k141_124576||full_3 - VOG00299 - 0.00043 11.7
0.0 0.00045 11.6 0.0 1.0 1 0 0 1 1 1 1 # 338 # 487 # 1 #
ID=66_3;partial=01;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.520
k141_62262||lt2gene_1 - VOG00303 - 1.4e-12 41.1
0.2 1.1e-06 21.5 0.0 2.0 2 0 0 2 2 2 2 # 1 # 429 # -1 #
ID=95_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.499
k141_185699||full_2 - VOG00309 - 2.8e-05 17.3
0.2 3.2e-05 17.1 0.2 1.0 1 0 0 1 1 1 1 # 138 # 419 # -1 #
ID=32_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.521
k141_124399||full_2 - VOG00309 - 0.0032 10.5
0.0 0.0032 10.5 0.0 1.0 1 0 0 1 1 1 1 # 341 # 574 # -1 #
ID=54_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.496
k141_124562||lt2gene_2 - VOG00341 - 7.3e-13 41.3
0.0 9.1e-13 41.0 0.0 1.0 1 0 0 1 1 1 1 # 132 # 407 # 1 #
ID=100_2;partial=01;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.442
k141_309146||full_2 - VOG00347 - 0.006 9.6
1.0 0.0071 9.3 1.0 1.1 1 0 0 1 1 1 1 # 343 # 588 # -1 #
ID=10_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.598
k141_124523||full_1 - VOG00367 - 1.7e-09 30.8
0.1 1.9e-09 30.7 0.1 1.0 1 0 0 1 1 1 1 # 1 # 270 # 1 #
ID=63_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.359
k141_124523||full_2 - VOG00367 - 1.1e-08 28.1
0.1 1.3e-08 28.0 0.1 1.0 1 0 0 1 1 1 1 # 162 # 440 # -1 #
ID=63_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.373
k141_124576||full_3 - VOG00367 - 1.3e-05 18.0
0.0 1.4e-05 18.0 0.0 1.0 1 0 0 1 1 1 1 # 338 # 487 # 1 #
ID=66_3;partial=01;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.520
k141_62468||full_1 - VOG00370 - 1.8e-09 30.9
2.9 2e-09 30.7 2.9 1.0 1 0 0 1 1 1 1 # 1 # 249 # 1 #
ID=69_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.434
k141_123742||full_3 - VOG00383 - 2e-11 36.4
0.0 2.3e-11 36.1 0.0 1.0 1 0 0 1 1 1 1 # 645 # 860 # 1 #
ID=8_3;partial=00;start_type=ATG;rbs_motif=GGAGG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.505
k141_123742||full_1 - VOG00383 - 5.4e-10 31.6
0.0 6.1e-10 31.5 0.0 1.0 1 0 0 1 1 1 1 # 1 # 315 # 1 #
ID=8_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.463
k141_123742||full_2 - VOG00383 - 7.4e-09 27.9
0.0 7.8e-09 27.8 0.0 1.0 1 0 0 1 1 1 1 # 284 # 601 # -1 #
ID=8_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc_
cont=0.472
k141_248025||full_1 - VOG00413 - 4.7e-14 44.9
0.0 4.8e-14 44.9 0.0 1.0 1 0 0 1 1 1 1 # 1 # 276 # 1 #
ID=71_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.576
k141_247700||full_2 - VOG00413 - 8.5e-10 30.9
0.0 9.5e-10 30.7 0.0 1.0 1 0 0 1 1 1 1 # 198 # 476 # -1 #
ID=42_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.502
k141_248031||full_2 - VOG00413 - 3.7e-08 25.4
0.0 4e-08 25.3 0.0 1.1 1 0 0 1 1 1 1 # 167 # 715 # 1 #
ID=72_2;partial=01;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.528
k141_309200||full_1 - VOG00491 - 5.8e-05 16.0
0.1 5.8e-05 16.0 0.1 1.0 1 0 0 1 1 1 1 # 1 # 312 # -1 #
ID=17_1;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.478
k141_124408||full_1 - VOG00498 - 4.6e-06 19.4
0.4 5.2e-06 19.2 0.4 1.0 1 0 0 1 1 1 1 # 1 # 207 # 1 #
ID=55_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=4;gc
_cont=0.444
k141_124408||full_2 - VOG00498 - 8.5e-05 15.2
0.0 8.5e-05 15.2 0.0 1.0 1 0 0 1 1 1 1 # 142 # 306 # -1 #
ID=55_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=4;gc
_cont=0.400
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/40.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/40.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/40.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:33:08 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_185699||full_2 - YP_655097@NC_008197 - 0.0018 11.4
0.0 0.0022 11.2 0.0 1.2 1 0 0 1 1 1 1 # 138 # 419 # -1 #
ID=32_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.521
k141_62410||full_3 - FAM000200 - 0.0016 11.6
1.7 0.062 6.3 0.5 2.1 1 1 0 2 2 2 2 # 481 # 798 # -1 #
ID=62_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.481
k141_62056||full_2 - FAM000209 - 1e-05 18.4
0.0 1.1e-05 18.3 0.0 1.0 1 0 0 1 1 1 1 # 146 # 343 # -1 #
ID=27_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.505
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/75.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/75.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/75.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:32:49 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_783||full_2 - K23144 - 0.0019 10.8
0.0 0.0022 10.6 0.0 1.0 1 0 0 1 1 1 1 # 176 # 400 # -1 #
ID=79_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.516
k141_248079||full_2 - K23284 - 4e-09 30.0
0.0 4.6e-09 29.8 0.0 1.0 1 0 0 1 1 1 1 # 267 # 695 # 1 #
ID=73_2;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.361
k141_301||full_2 - K23510 - 0.0011 11.5
0.0 0.0014 11.2 0.0 1.1 1 0 0 1 1 1 1 # 240 # 716 # 1 #
ID=24_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.484
k141_124338||lt2gene_1 - VOG00003 - 4.6e-10 32.9
0.0 5.3e-10 32.7 0.0 1.0 1 0 0 1 1 1 1 # 3 # 419 # 1 #
ID=96_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.621
k141_185699||full_2 - VOG00070 - 2.4e-16 52.8
0.1 2.8e-16 52.6 0.1 1.0 1 0 0 1 1 1 1 # 138 # 419 # -1 #
ID=32_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.521
k141_186136||full_1 - VOG00070 - 0.0027 9.6
0.0 0.003 9.5 0.0 1.0 1 0 0 1 1 1 1 # 1 # 354 # -1 #
ID=77_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.571
k141_185699||full_2 - VOG00072 - 0.001 12.0
0.0 0.001 12.0 0.0 1.1 1 0 0 1 1 1 1 # 138 # 419 # -1 #
ID=32_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.521
k141_510||lt2gene_1 - VOG00099 - 2.4e-07 24.2
0.0 3.2e-07 23.8 0.0 1.1 1 0 0 1 1 1 1 # 1 # 843 # 1 #
ID=94_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.654
k141_247850||full_2 - VOG00131 - 7.5e-22 71.8
0.2 7.8e-22 71.7 0.2 1.0 1 0 0 1 1 1 1 # 144 # 353 # -1 #
ID=58_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.352
k141_309160||full_1 - VOG00139 - 0.00039 12.9
0.2 0.00042 12.8 0.2 1.0 1 0 0 1 1 1 1 # 1 # 168 # 1 #
ID=11_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.488
k141_309160||full_2 - VOG00139 - 0.0016 10.8
0.1 0.0018 10.7 0.1 1.0 1 0 0 1 1 1 1 # 204 # 443 # -1 #
ID=11_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.463
k141_247850||full_2 - VOG00151 - 1.2e-29 97.2
0.0 1.3e-29 97.1 0.0 1.0 1 0 0 1 1 1 1 # 144 # 353 # -1 #
ID=58_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.352
k141_185699||full_2 - VOG00156 - 0.00018 14.6
0.1 0.00021 14.3 0.1 1.0 1 0 0 1 1 1 1 # 138 # 419 # -1 #
ID=32_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.521
k141_185589||lt2gene_2 - VOG00177 - 5.1e-14 45.6
2.0 6.9e-14 45.1 2.0 1.1 1 0 0 1 1 1 1 # 334 # 1101 # 1 #
ID=86_2;partial=01;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.553
k141_124338||lt2gene_1 - VOG00184 - 2.1e-17 57.4
0.0 2.1e-17 57.3 0.0 1.1 1 0 0 1 1 1 1 # 3 # 419 # 1 #
ID=96_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.621
k141_309174||full_2 - VOG00187 - 2.4e-20 66.2
0.0 2.7e-20 66.0 0.0 1.0 1 0 0 1 1 1 1 # 307 # 828 # 1 #
ID=14_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=11-
12bp;genetic_code=11;gc_cont=0.431
k141_124329||full_2 - VOG00188 - 6.4e-05 15.1
0.1 6.4e-05 15.1 0.1 1.0 1 0 0 1 1 1 1 # 161 # 499 # 1 #
ID=45_2;partial=00;start_type=ATG;rbs_motif=ATA;rbs_spacer=10bp;genetic_code=11;gc_
cont=0.472
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/39.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/39.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/39.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:32:28 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
# ------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_62145||lt2gene_1 - NP_076737@NC_002668 - 1.2e-12 40.6
0.0 1.6e-12 40.2 0.0 1.1 1 0 0 1 1 1 1 # 3 # 362 # -1 #
ID=91_1;partial=10;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.531
k141_247892||full_1 - NP_848210@NC_004775 - 0.0017 10.6
0.0 0.0017 10.6 0.0 1.0 1 0 0 1 1 1 1 # 1 # 207 # -1 #
ID=61_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=4;gc_
cont=0.290
k141_247892||full_1 - NP_958057@NC_005340 - 0.00076 11.6
0.0 0.0008 11.5 0.0 1.0 1 0 0 1 1 1 1 # 1 # 207 # -1 #
ID=61_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=4;gc_
cont=0.290
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/69.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/69.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/69.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:32:14 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_507||full_3 - DUF1772 PF08592.11 0.00015 15.9
0.0 0.00016 15.8 0.0 1.1 1 0 0 1 1 1 1 # 604 # 903 # 1 #
ID=40_3;partial=01;start_type=ATG;rbs_motif=AGGAG;rbs_spacer=5-
10bp;genetic_code=15;gc_cont=0.383
k141_62278||full_2 - DUF1974 PF09317.11 0.00031 14.2
0.0 0.00036 14.0 0.0 1.1 1 0 0 1 1 1 1 # 316 # 699 # -1 #
ID=48_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.367
k141_185699||full_2 - DUF2791 PF10923.8 0.0016 11.1
0.0 0.0018 10.9 0.0 1.0 1 0 0 1 1 1 1 # 138 # 419 # -1 #
ID=32_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.521
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/4.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/4.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/4.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:31:57 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_510||lt2gene_1 - K09809 - 1.5e-05 16.6
0.0 1.8e-05 16.4 0.0 1.1 1 0 0 1 1 1 1 # 1 # 843 # 1 #
ID=94_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.654
k141_247701||full_3 - K09827 - 3.7e-07 22.7
0.1 4.1e-07 22.5 0.1 1.0 1 0 0 1 1 1 1 # 807 # 932 # -1 #
ID=43_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.508
k141_247701||full_2 - K09827 - 3.7e-07 22.7
0.1 4.1e-07 22.5 0.1 1.0 1 0 0 1 1 1 1 # 713 # 838 # 1 #
ID=43_2;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=3bp;genetic_code=11;gc_c
ont=0.508
k141_185699||full_2 - K09882 - 0.00026 14.1
0.0 0.00026 14.1 0.0 1.2 1 0 0 1 1 1 1 # 138 # 419 # -1 #
ID=32_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.521
k141_186136||full_1 - K09882 - 0.0003 13.9
0.0 0.00038 13.5 0.0 1.1 1 0 0 1 1 1 1 # 1 # 354 # -1 #
ID=77_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.571
k141_124399||full_2 - K09882 - 0.001 12.1
0.0 0.001 12.1 0.0 1.1 1 0 0 1 1 1 1 # 341 # 574 # -1 #
ID=54_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.496
k141_185578||full_1 - K09912 - 0.12 5.8
13.1 0.12 5.8 13.1 1.0 1 0 0 1 1 1 0 # 22 # 144 # -1 #
ID=20_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.415
k141_309146||full_2 - K10026 - 0.0064 9.5
1.3 0.0069 9.4 1.3 1.1 1 0 0 1 1 1 1 # 343 # 588 # -1 #
ID=10_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.598
k141_124399||full_2 - K10762 - 0.00018 14.8
0.0 0.00021 14.6 0.0 1.1 1 0 0 1 1 1 1 # 341 # 574 # -1 #
ID=54_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.496
k141_186136||full_1 - K10763 - 0.00041 13.4
0.0 0.00051 13.0 0.0 1.1 1 0 0 1 1 1 1 # 1 # 354 # -1 #
ID=77_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.571
k141_140||full_1 - K11233 - 2.2e-05 17.2
0.3 0.00098 11.8 0.6 2.0 2 0 0 2 2 2 2 # 1 # 360 # -1 #
ID=13_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.475
k141_186136||full_1 - K11338 - 0.00042 12.7
0.0 0.00047 12.5 0.0 1.0 1 0 0 1 1 1 1 # 1 # 354 # -1 #
ID=77_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.571
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/32.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/32.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/32.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:32:05 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_124329||full_3 - YP_001595330@NC_010105 - 0.0023 11.4
0.4 0.0034 10.9 0.4 1.2 1 0 0 1 1 1 1 # 453 # 644 # -1 #
ID=45_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.490
k141_186123||lt2gene_1 - YP_002790769@NC_012530 - 0.0024
10.1 0.0 0.0028 9.9 0.0 1.0 1 0 0 1 1 1 1 # 3 # 215 # 1 #
ID=102_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;
gc_cont=0.371
k141_123843||full_2 - YP_002925087@NC_012753 - 1.5e-10 34.9
0.1 1.8e-10 34.7 0.1 1.0 1 0 0 1 1 1 1 # 209 # 364 # 1 #
ID=15_2;partial=01;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=15bp;genetic_code=4;gc
_cont=0.519
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/70.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/70.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/70.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:32:20 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_185699||full_2 - VOG11091 - 0.00058 13.0
0.0 0.0006 13.0 0.0 1.1 1 0 0 1 1 1 1 # 138 # 419 # -1 #
ID=32_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.521
k141_248079||full_2 - VOG11384 - 5.1e-06 19.0
9.6 6e-06 18.8 9.6 1.1 1 0 0 1 1 1 1 # 267 # 695 # 1 #
ID=73_2;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.361
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/56.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/56.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/56.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:33:09 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_309146||full_2 - VOG03584 - 0.0052 10.2
1.4 0.0049 10.3 1.4 1.1 1 0 0 1 1 1 1 # 343 # 588 # -1 #
ID=10_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.598
k141_124399||full_2 - VOG03675 - 1e-06 21.3
0.0 1.2e-06 21.1 0.0 1.0 1 0 0 1 1 1 1 # 341 # 574 # -1 #
ID=54_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.496
k141_185699||full_2 - VOG03675 - 0.00016 14.0
0.0 0.00018 13.9 0.0 1.0 1 0 0 1 1 1 1 # 138 # 419 # -1 #
ID=32_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.521
k141_124399||full_2 - VOG03915 - 0.0008 11.4
0.0 0.00085 11.3 0.0 1.0 1 0 0 1 1 1 1 # 341 # 574 # -1 #
ID=54_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.496
k141_309679||full_1 - VOG04109 - 3.2e-06 19.1
1.3 3.3e-06 19.0 1.3 1.0 1 0 0 1 1 1 1 # 1 # 192 # 1 #
ID=70_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.312
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/49.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/49.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/49.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:33:00 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_62468||full_1 - VOG19319 - 0.00093 11.3
2.0 0.001 11.2 2.0 1.0 1 0 0 1 1 1 1 # 1 # 249 # 1 #
ID=69_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.434
k141_248079||full_2 - VOG19379 - 0.012 6.9
23.4 0.062 4.6 23.4 1.8 1 1 0 1 1 1 0 # 267 # 695 # 1 #
ID=73_2;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.361
k141_248079||full_2 - VOG20350 - 7.5e-06 18.4
4.0 7.5e-06 18.4 4.0 1.1 1 0 0 1 1 1 1 # 267 # 695 # 1 #
ID=73_2;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.361
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/64.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/64.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/64.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:32:13 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_309160||full_1 - K07726 - 2.2e-07 24.2
0.0 2.2e-07 24.2 0.0 1.0 1 0 0 1 1 1 1 # 1 # 168 # 1 #
ID=11_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.488
k141_309160||full_2 - K07726 - 2e-06 21.1
0.0 2.3e-06 20.9 0.0 1.0 1 0 0 1 1 1 1 # 204 # 443 # -1 #
ID=11_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.463
k141_247655||full_2 - K07726 - 6.1e-06 19.5
0.0 6.1e-06 19.5 0.0 1.0 1 0 0 1 1 1 1 # 290 # 433 # 1 #
ID=39_2;partial=01;start_type=ATG;rbs_motif=TATA;rbs_spacer=7bp;genetic_code=11;gc_
cont=0.403
k141_247655||full_2 - K07728 - 7.1e-08 25.7
0.0 7.4e-08 25.7 0.0 1.0 1 0 0 1 1 1 1 # 290 # 433 # 1 #
ID=39_2;partial=01;start_type=ATG;rbs_motif=TATA;rbs_spacer=7bp;genetic_code=11;gc_
cont=0.403
k141_309160||full_2 - K07731 - 4.2e-05 16.7
0.0 4.9e-05 16.5 0.0 1.0 1 0 0 1 1 1 1 # 204 # 443 # -1 #
ID=11_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.463
k141_309160||full_1 - K07731 - 0.00015 15.0
0.0 0.00016 14.8 0.0 1.0 1 0 0 1 1 1 1 # 1 # 168 # 1 #
ID=11_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.488
k141_124377||full_2 - K07778 - 0.047 6.4
4.5 0.05 6.3 4.5 1.0 1 0 0 1 1 1 0 # 234 # 536 # -1 #
ID=51_2;partial=00;start_type=ATG;rbs_motif=GGTG;rbs_spacer=8bp;genetic_code=11;gc_
cont=0.462
k141_247649||full_1 - K08679 - 2.8e-07 23.4
0.0 2.9e-07 23.3 0.0 1.0 1 0 0 1 1 1 1 # 161 # 379 # -1 #
ID=38_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.521
k141_62056||full_2 - K08679 - 3.6e-06 19.7
0.1 3.6e-06 19.7 0.1 1.0 1 0 0 1 1 1 1 # 146 # 343 # -1 #
ID=27_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.505
k141_510||lt2gene_1 - K09726 - 0.00087 11.8
0.0 0.0012 11.3 0.0 1.1 1 0 0 1 1 1 1 # 1 # 843 # 1 #
ID=94_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.654
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/31.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/31.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/31.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:31:46 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_62468||full_1 - VOG24135 - 2.1e-05 17.2
1.3 2.7e-05 16.9 1.3 1.2 1 0 0 1 1 1 1 # 1 # 249 # 1 #
ID=69_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.434
k141_247616||lt2gene_1 -
2061766007@rumenHiSeq_NODE_4171496_len_100837_cov_1_816377@_HiSeq_02547850 -
2.1e-20 66.1 0.0 2.2e-20 66.0 0.0 1.0 1 0 0 1 1 1 1 # 116
# 388 # -1 #
ID=92_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.469
k141_247892||full_1 -
2061766007@rumenHiSeq_NODE_4171496_len_100837_cov_1_816377@_HiSeq_02547850 -
6.2e-17 54.7 0.1 6.2e-17 54.7 0.1 1.0 1 0 0 1 1 1 1 # 1 #
207 # -1 #
ID=61_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=4;gc_
cont=0.290
k141_247892||full_2 -
2061766007@rumenHiSeq_NODE_4171496_len_100837_cov_1_816377@_HiSeq_02547850 -
2.3e-10 33.0 0.2 2.3e-10 33.0 0.2 1.0 1 0 0 1 1 1 1 # 248
# 409 # 1 #
ID=61_2;partial=01;start_type=TTG;rbs_motif=TAA;rbs_spacer=5bp;genetic_code=4;gc_co
nt=0.284
k141_186123||lt2gene_1 -
2061766007@rumenHiSeq_NODE_4171496_len_100837_cov_1_816377@_HiSeq_02547850 -
3.8e-08 25.7 0.0 4.5e-08 25.4 0.0 1.0 1 0 0 1 1 1 1 # 3 #
215 # 1 #
ID=102_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;
gc_cont=0.371
k141_62386||lt2gene_1 -
2061766007@rumenHiSeq_NODE_4171496_len_100837_cov_1_816377@_HiSeq_02547920 -
1.3e-09 31.0 0.0 1.4e-09 30.9 0.0 1.0 1 0 0 1 1 1 1 # 3 #
167 # -1 #
ID=98_1;partial=10;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.358
k141_124329||full_2 -
2061766007_rumenHiSeq_NODE_4296536_len_63593_cov_4_810545_HiSeq_12263180_2063886324
- 0.00035 13.0 0.1 0.00037 13.0 0.1 1.1 1 0 0 1 1
1 1 # 161 # 499 # 1 #
ID=45_2;partial=00;start_type=ATG;rbs_motif=ATA;rbs_spacer=10bp;genetic_code=11;gc_
cont=0.472
k141_124354||full_1 - 3300000114@IMNBL3_c10000161@IMNBL3_1000016133 -
9.1e-16 50.9 0.0 1e-15 50.7 0.0 1.0 1 0 0 1 1 1 1 # 1 #
261 # -1 #
ID=49_1;partial=00;start_type=TTG;rbs_motif=TAA;rbs_spacer=11bp;genetic_code=4;gc_c
ont=0.295
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/65.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/65.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/65.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:33:24 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_204||full_2 - K01079 - 6e-05 15.9
0.1 6.4e-05 15.8 0.1 1.0 1 0 0 1 1 1 1 # 159 # 395 # 1 #
ID=19_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.274
k141_248089||full_2 - K01079 - 0.014 8.1
4.7 0.016 7.9 4.7 1.1 1 0 0 1 1 1 0 # 357 # 674 # 1 #
ID=75_2;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=12bp;genetic_code=11;gc_
cont=0.299
k141_62278||full_1 - K01185 - 5.4e-10 33.0
0.0 5.4e-10 33.0 0.0 1.0 1 0 0 1 1 1 1 # 1 # 222 # -1 #
ID=48_1;partial=00;start_type=ATG;rbs_motif=GGAG/GAGG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.392
k141_124315||full_2 - K01421 - 0.00018 13.6
0.2 0.00021 13.3 0.2 1.0 1 0 0 1 1 1 1 # 190 # 594 # 1 #
ID=41_2;partial=00;start_type=ATG;rbs_motif=TATAT;rbs_spacer=4bp;genetic_code=11;gc
_cont=0.410
k141_309208||full_3 - K01811 - 0.00017 13.8
0.0 0.00017 13.7 0.0 1.0 1 0 0 1 1 1 1 # 523 # 654 # 1 #
ID=18_3;partial=01;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.553
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/25.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/25.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/25.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:31:44 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_62468||full_1 - VOG00517 - 1e-09 31.9
5.1 1.2e-09 31.7 5.1 1.0 1 0 0 1 1 1 1 # 1 # 249 # 1 #
ID=69_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.434
k141_309160||full_1 - VOG00532 - 8.4e-06 19.3
0.0 8.7e-06 19.2 0.0 1.0 1 0 0 1 1 1 1 # 1 # 168 # 1 #
ID=11_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.488
k141_309160||full_2 - VOG00532 - 6.5e-05 16.4
0.0 6.6e-05 16.3 0.0 1.0 1 0 0 1 1 1 1 # 204 # 443 # -1 #
ID=11_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.463
k141_247655||full_2 - VOG00532 - 7.8e-05 16.1
0.0 8.2e-05 16.0 0.0 1.0 1 0 0 1 1 1 1 # 290 # 433 # 1 #
ID=39_2;partial=01;start_type=ATG;rbs_motif=TATA;rbs_spacer=7bp;genetic_code=11;gc_
cont=0.403
k141_248031||full_2 - VOG00575 - 0.0012 11.6
0.0 0.0023 10.7 0.0 1.3 1 0 0 1 1 1 1 # 167 # 715 # 1 #
ID=72_2;partial=01;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.528
k141_62017||full_4 - VOG00584 - 1.9e-06 20.5
0.0 1.9e-06 20.5 0.0 1.0 1 0 0 1 1 1 1 # 1043 # 1192 # 1 #
ID=21_4;partial=01;start_type=TTG;rbs_motif=GGT;rbs_spacer=11bp;genetic_code=11;gc_
cont=0.527
k141_247700||full_2 - VOG00630 - 5.3e-10 32.3
0.1 6.7e-10 32.0 0.1 1.1 1 0 0 1 1 1 1 # 198 # 476 # -1 #
ID=42_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.502
k141_185699||full_2 - VOG00637 - 0.0007 11.4
0.1 0.0008 11.2 0.1 1.0 1 0 0 1 1 1 1 # 138 # 419 # -1 #
ID=32_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.521
k141_185469||lt2gene_1 - VOG00648 - 8.4e-16 51.5
4.4 8.6e-16 51.4 4.4 1.0 1 0 0 1 1 1 1 # 3 # 158 # 1 #
ID=82_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.571
k141_186136||full_1 - VOG00649 - 5e-10 33.3
0.0 5.5e-10 33.1 0.0 1.1 1 0 0 1 1 1 1 # 1 # 354 # -1 #
ID=77_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.571
k141_185699||full_2 - VOG00649 - 0.00024 14.6
0.1 0.00025 14.5 0.1 1.0 1 0 0 1 1 1 1 # 138 # 419 # -1 #
ID=32_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.521
k141_124399||full_2 - VOG00649 - 0.003 11.0
0.0 0.003 11.0 0.0 1.1 1 0 0 1 1 1 1 # 341 # 574 # -1 #
ID=54_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.496
k141_124090||lt2gene_2 - VOG00655 - 0.00013 16.0
0.0 0.00017 15.7 0.0 1.1 1 0 0 1 1 1 1 # 130 # 471 # 1 #
ID=87_2;partial=01;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.558
k141_185451||full_5 - VOG00656 - 7.7e-09 28.8
0.0 8.2e-09 28.8 0.0 1.0 1 0 0 1 1 1 1 # 1190 # 1339 # -1 #
ID=4_5;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.553
k141_185451||full_4 - VOG00656 - 2.4e-08 27.2
0.0 2.7e-08 27.0 0.0 1.0 1 0 0 1 1 1 1 # 1032 # 1229 # 1 #
ID=4_4;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc_
cont=0.596
k141_185667||full_2 - VOG00656 - 5.9e-07 22.6
0.0 6.2e-07 22.5 0.0 1.0 1 0 0 1 1 1 1 # 186 # 443 # -1 #
ID=29_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.581
k141_185667||full_1 - VOG00656 - 1.4e-05 18.0
0.0 1.7e-05 17.8 0.0 1.0 1 0 0 1 1 1 1 # 1 # 276 # 1 #
ID=29_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.540
k141_185451||full_1 - VOG00656 - 0.001 11.9
0.0 0.001 11.9 0.0 1.0 1 0 0 1 1 1 1 # 1 # 144 # -1 #
ID=4_1;partial=10;start_type=GTG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc_
cont=0.597
k141_185833||full_2 - VOG00656 - 0.0017 11.2
0.0 0.0017 11.2 0.0 1.0 1 0 0 1 1 1 1 # 479 # 589 # 1 #
ID=47_2;partial=01;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.387
k141_309160||full_1 - VOG00683 - 1.9e-05 18.2
0.0 1.9e-05 18.2 0.0 1.0 1 0 0 1 1 1 1 # 1 # 168 # 1 #
ID=11_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.488
k141_309160||full_2 - VOG00683 - 0.00068 13.1
0.0 0.00076 13.0 0.0 1.1 1 0 0 1 1 1 1 # 204 # 443 # -1 #
ID=11_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.463
k141_309679||full_1 - VOG00733 - 2.3e-07 24.1
0.1 2.4e-07 24.0 0.1 1.0 1 0 0 1 1 1 1 # 1 # 192 # 1 #
ID=70_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.312
k141_247999||full_3 - VOG00753 - 0.0014 12.5
0.0 0.0015 12.4 0.0 1.0 1 0 0 1 1 1 1 # 746 # 976 # 1 #
ID=67_3;partial=01;start_type=GTG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.316
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/41.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/41.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/41.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:32:46 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_507||full_2 - VOG17351 - 1.1e-05 16.0
0.3 1.2e-05 15.9 0.3 1.0 1 0 0 1 1 1 1 # 339 # 602 # 1 #
ID=40_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-
10bp;genetic_code=15;gc_cont=0.367
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/63.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/63.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/63.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:32:09 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_185589||lt2gene_2 - YP_007238078@NC_019933 - 6.6e-16
52.0 1.0 7.7e-16 51.8 1.0 1.2 1 0 0 1 1 1 1 # 334 # 1101 #
1 # ID=86_2;partial=01;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.553
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/73.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/73.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/73.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:32:45 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_248025||full_1 - SbcCD_C PF13558.6 0.00051 14.1
0.1 0.0091 10.1 0.1 2.2 1 1 0 1 1 1 1 # 1 # 276 # 1 #
ID=71_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.576
k141_309160||full_1 - Sigma70_r4 PF04545.16 1.5e-05 18.3
0.3 1.9e-05 18.0 0.3 1.2 1 0 0 1 1 1 1 # 1 # 168 # 1 #
ID=11_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.488
k141_309160||full_2 - Sigma70_r4 PF04545.16 0.00012 15.5
0.3 0.0002 14.7 0.3 1.4 1 0 0 1 1 1 1 # 204 # 443 # -1 #
ID=11_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.463
k141_247700||full_2 - SMC_N PF02463.19 7e-07 22.7
0.0 7.5e-07 22.6 0.0 1.1 1 0 0 1 1 1 1 # 198 # 476 # -1 #
ID=42_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.502
k141_186123||lt2gene_1 - Terminase_6 PF03237.15 0.0013 12.3
0.1 0.002 11.6 0.1 1.4 1 1 0 1 1 1 1 # 3 # 215 # 1 #
ID=102_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;
gc_cont=0.371
k141_247701||full_1 - TetR_C_4 PF08359.11 0.0018 12.3
0.0 0.0035 11.3 0.0 1.5 1 0 0 1 1 1 1 # 1 # 534 # -1 #
ID=43_1;partial=10;start_type=ATG;rbs_motif=TAAAAA;rbs_spacer=12bp;genetic_code=11;
gc_cont=0.491
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/12.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/12.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/12.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:32:17 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_247655||full_1 - Crp PF00325.20 0.00079 12.9
0.1 0.0011 12.5 0.1 1.2 1 0 0 1 1 1 1 # 2 # 109 # 1 #
ID=39_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.472
k141_309200||full_1 - DnaB_C PF03796.15 0.0016 11.6
0.1 0.0018 11.5 0.1 1.1 1 0 0 1 1 1 1 # 1 # 312 # -1 #
ID=17_1;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.478
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/3.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/3.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/3.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:33:14 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_140||full_2 - YP_004063777@NC_014792 - 0.0012 12.8
0.0 0.0015 12.4 0.0 1.1 1 0 0 1 1 1 1 # 403 # 762 # 1 #
ID=13_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.486
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/71.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/71.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/71.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:32:00 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_124315||full_2 - YtxH PF12732.7 0.00028 15.3
0.1 0.00044 14.6 0.1 1.3 1 0 0 1 1 1 1 # 190 # 594 # 1 #
ID=41_2;partial=00;start_type=ATG;rbs_motif=TATAT;rbs_spacer=4bp;genetic_code=11;gc
_cont=0.410
k141_248025||full_2 - Pfam-B_875 PB000875 0.00099 13.3
3.2 0.00099 13.3 3.2 1.7 1 1 1 2 2 2 1 # 225 # 389 # -1 #
ID=71_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.503
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/14.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/14.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/14.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:32:24 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_204||full_2 - VOG07457 - 2e-15 49.6
0.0 2e-15 49.6 0.0 1.0 1 0 0 1 1 1 1 # 159 # 395 # 1 #
ID=19_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.274
k141_248079||full_2 - VOG08234 - 0.14 5.1
20.4 0.42 3.6 20.4 1.7 1 1 0 1 1 1 0 # 267 # 695 # 1 #
ID=73_2;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.361
k141_510||lt2gene_1 - VOG09528 - 3.6e-14 46.5
0.0 4.4e-14 46.2 0.0 1.1 1 0 0 1 1 1 1 # 1 # 843 # 1 #
ID=94_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.654
k141_309643||lt2gene_1 - VOG09528 - 4.6e-08 26.3
0.0 5.2e-08 26.1 0.0 1.0 1 0 0 1 1 1 1 # 2 # 751 # -1 #
ID=99_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.591
k141_186123||lt2gene_1 - VOG09528 - 6e-08 25.9
0.0 6.8e-08 25.7 0.0 1.0 1 0 0 1 1 1 1 # 3 # 215 # 1 #
ID=102_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;
gc_cont=0.371
k141_124119||lt2gene_1 - VOG09528 - 4.5e-05 16.4
0.6 5.4e-05 16.1 0.6 1.2 1 1 0 1 1 1 1 # 3 # 470 # 1 #
ID=89_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.581
k141_185469||lt2gene_1 - VOG09620 - 2.6e-05 17.4
0.6 2.6e-05 17.4 0.6 1.1 1 0 0 1 1 1 1 # 3 # 158 # 1 #
ID=82_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.571
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/52.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/52.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/52.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:33:27 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_185699||full_2 - K18532 - 0.00013 15.2
0.0 0.00014 15.2 0.0 1.1 1 0 0 1 1 1 1 # 138 # 419 # -1 #
ID=32_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.521
k141_185813||full_2 - K19221 - 0.00055 13.0
0.3 0.00057 12.9 0.3 1.1 1 0 0 1 1 1 1 # 340 # 654 # 1 #
ID=44_2;partial=01;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.486
k141_186136||full_1 - K19360 - 0.0023 9.5
0.0 0.0028 9.2 0.0 1.1 1 0 0 1 1 1 1 # 1 # 354 # -1 #
ID=77_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.571
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/36.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/36.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/36.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:33:30 2024
# [ok]
#
--- full sequence ---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name
accession E-value score bias E-value score bias exp reg clu ov env dom
rep inc description of target
#------------------- ----------
-------------------- ---------- --------- ------ ----- --------- ------ ----- ---
--- --- --- --- --- --- --- ---------------------
k141_61806||full_1 -
3300000116@DelMOSpr2010_c10000092@DelMOSpr2010_1000009224 - 1.2e-06
21.8 0.4 1.3e-06 21.7 0.4 1.0 1 0 0 1 1 1 1 # 1 # 213 # -1
#
ID=1_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc_
cont=0.418
k141_185496||full_1 -
3300000405@LV_Brine_h2_0102DRAFT_1000028@LV_Brine_h2_0102DRAFT_100002844 -
0.0002 12.5 0.0 0.00022 12.4 0.0 1.0 1 0 0 1 1 1 1 # 1 #
186 # 1 #
ID=9_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.575
k141_461||full_1 - 3300000558@Draft_10001874@Draft_1000187426 -
4.1e-20 65.6 0.2 4.7e-20 65.4 0.2 1.0 1 0 0 1 1 1 1 # 1 #
327 # 1 #
ID=36_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=15;g
c_cont=0.450
k141_461||full_2 - 3300000558@Draft_10001874@Draft_1000187426 -
2.6e-08 26.6 0.0 2.6e-08 26.6 0.0 1.0 1 0 0 1 1 1 1 # 263
# 415 # -1 #
ID=36_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=15;g
c_cont=0.471
k141_124090||lt2gene_2 -
3300001403@JGI20205J14842_1000001@JGI20205J14842_10000018 - 1.6e-17
57.3 0.0 2.2e-17 56.9 0.0 1.1 1 0 0 1 1 1 1 # 130 # 471 # 1
#
ID=87_2;partial=01;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.558
k141_461||full_1 -
3300001450@JGI24006J15134_10000101@JGI24006J15134_1000010178 - 9e-08
24.6 0.1 1e-07 24.5 0.1 1.0 1 0 0 1 1 1 1 # 1 # 327 # 1 #
ID=36_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=15;g
c_cont=0.450
k141_186123||lt2gene_1 -
3300001450@JGI24006J15134_10000101@JGI24006J15134_1000010178 - 1.2e-05
17.6 0.0 1.4e-05 17.4 0.0 1.0 1 0 0 1 1 1 1 # 3 # 215 # 1 #
ID=102_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;
gc_cont=0.371
k141_186123||lt2gene_1 -
3300001546@JGI12659J15293_10000012@JGI12659J15293_1000001270 - 2.3e-07
23.8 0.0 2.5e-07 23.7 0.0 1.0 1 0 0 1 1 1 1 # 3 # 215 # 1 #
ID=102_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;
gc_cont=0.371
k141_247286||full_2 - 3300001580@Draft_10000222@Draft_1000022210 -
6.3e-13 42.0 0.0 7.8e-13 41.7 0.0 1.0 1 0 0 1 1 1 1 # 106
# 342 # -1 #
ID=3_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.629
k141_247286||full_1 - 3300001580@Draft_10000222@Draft_1000022210 -
5.6e-06 19.1 0.0 5.8e-06 19.1 0.0 1.0 1 0 0 1 1 1 1 # 1 #
105 # 1 #
ID=3_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.610
k141_62468||full_1 - 3300001679@TahiMoana_1000110@TahiMoana_100011028 -
0.00018 12.3 1.5 0.00019 12.2 1.5 1.0 1 0 0 1 1 1 1 # 1 #
249 # 1 #
ID=69_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.434
k141_463||full_1 - 3300001683@GBIDBA_10000616@GBIDBA_1000061667 -
4.4e-17 56.1 0.4 5.2e-17 55.9 0.4 1.0 1 0 0 1 1 1 1 # 1 #
249 # 1 #
ID=37_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.309
k141_463||full_2 - 3300001683@GBIDBA_10000616@GBIDBA_1000061667 -
1e-14 48.4 0.1 1.2e-14 48.1 0.1 1.0 1 0 0 1 1 1 1 # 408 #
671 # 1 #
ID=37_2;partial=00;start_type=ATG;rbs_motif=TATATA;rbs_spacer=15bp;genetic_code=11;
gc_cont=0.299
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/66.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/66.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/66.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:32:55 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_248079||full_2 - Pfam-B_12779 PB012779 0.0042 10.7
11.4 0.0054 10.4 11.4 1.1 1 0 0 1 1 1 1 # 267 # 695 # 1 #
ID=73_2;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.361
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/18.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/18.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/18.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:32:31 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_124354||full_2 - DUF2911 PF11138.8 4.8e-05 17.1
0.0 5e-05 17.0 0.0 1.0 1 0 0 1 1 1 1 # 218 # 352 # -1 #
ID=49_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=4;gc
_cont=0.356
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/5.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/5.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/5.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:31:47 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_185496||full_3 - Pfam-B_7994 PB007994 8.1e-08 25.9
0.0 9.1e-08 25.8 0.0 1.1 1 0 0 1 1 1 1 # 421 # 549 # 1 #
ID=9_3;partial=01;start_type=GTG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.519
k141_247700||full_2 - Pfam-B_8598 PB008598 1.1e-06 21.9
0.0 2.3e-06 20.9 0.0 1.5 1 0 0 1 1 1 1 # 198 # 476 # -1 #
ID=42_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.502
k141_62047||full_1 - Pfam-B_11088 PB011088 0.0013 13.1
0.0 0.0015 12.9 0.0 1.2 1 0 0 1 1 1 1 # 1 # 231 # -1 #
ID=25_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.532
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/17.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/17.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/17.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:31:52 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_185461||full_2 - MEDS PF14417.6 0.0016 12.1
0.0 0.0018 11.9 0.0 1.0 1 0 0 1 1 1 1 # 337 # 591 # 1 #
ID=6_2;partial=00;start_type=ATG;rbs_motif=AGGA;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.678
k141_309499||full_1 - Metallophos_2 PF12850.7 6.3e-06 20.3
0.0 7e-06 20.1 0.0 1.0 1 0 0 1 1 1 1 # 260 # 469 # -1 #
ID=46_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.233
k141_185699||full_2 - NB-ARC PF00931.22 0.0013 11.8
0.0 0.0016 11.5 0.0 1.1 1 0 0 1 1 1 1 # 138 # 419 # -1 #
ID=32_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.521
k141_185699||full_2 - NTPase_1 PF03266.15 4.9e-05 17.1
0.3 5.5e-05 16.9 0.3 1.1 1 0 0 1 1 1 1 # 138 # 419 # -1 #
ID=32_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.521
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/9.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/9.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/9.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:32:06 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_248079||full_2 - Pfam-B_1730 PB001730 3.1 0.1
12.1 3.5 -0.1 12.1 1.0 1 0 0 1 1 1 0 # 267 # 695 # 1 #
ID=73_2;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.361
k141_248079||full_2 - Pfam-B_1826 PB001826 7 -1.4
11.6 9.4 -1.8 11.6 1.1 1 0 0 1 1 1 0 # 267 # 695 # 1 #
ID=73_2;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.361
k141_185496||full_2 - Pfam-B_2365 PB002365 0.00071 13.0
0.1 0.00087 12.7 0.1 1.0 1 0 0 1 1 1 1 # 122 # 382 # -1 #
ID=9_2;partial=00;start_type=GTG;rbs_motif=4Base/6BMM;rbs_spacer=13-
15bp;genetic_code=11;gc_cont=0.552
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/15.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/15.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/15.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:31:56 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/57.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/57.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/57.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:32:40 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/68.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/68.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/68.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:32:21 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_124029||full_2 - BRCT PF00533.26 3.7e-17 56.4
0.0 4.4e-17 56.1 0.0 1.0 1 0 0 1 1 1 1 # 220 # 465 # -1 #
ID=26_2;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.472
k141_124029||full_1 - BRCT PF00533.26 8.8e-10 32.7
0.0 8.8e-10 32.7 0.0 1.0 1 0 0 1 1 1 1 # 1 # 165 # 1 #
ID=26_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.461
k141_185699||full_2 - cobW PF02492.19 0.00046 13.6
0.1 0.00051 13.5 0.1 1.1 1 0 0 1 1 1 1 # 138 # 419 # -1 #
ID=32_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.521
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/2.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/2.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/2.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:32:08 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_185699||full_2 - VOG01813 - 1.5e-06 20.9
0.0 1.9e-06 20.6 0.0 1.0 1 0 0 1 1 1 1 # 138 # 419 # -1 #
ID=32_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.521
k141_309200||full_1 - VOG01882 - 6.9e-08 25.5
0.0 7.7e-08 25.4 0.0 1.0 1 0 0 1 1 1 1 # 1 # 312 # -1 #
ID=17_1;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.478
k141_123991||full_2 - VOG01882 - 0.00039 13.1
0.0 0.00042 13.0 0.0 1.0 1 0 0 1 1 1 1 # 227 # 577 # 1 #
ID=22_2;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.593
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/45.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/45.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/45.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:33:15 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_779||full_1 - VOG10297 - 0.00086 13.4
0.1 0.00094 13.2 0.1 1.0 1 0 0 1 1 1 1 # 1 # 177 # -1 #
ID=78_1;partial=00;start_type=GTG;rbs_motif=GGxGG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.576
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/54.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/54.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/54.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:32:50 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_124338||lt2gene_1 - VOG00885 - 0.0016 11.8
0.0 0.0017 11.7 0.0 1.1 1 0 0 1 1 1 1 # 3 # 419 # 1 #
ID=96_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.621
k141_248079||full_2 - VOG00891 - 1.7e-08 27.5
8.9 1.9e-08 27.3 8.9 1.1 1 0 0 1 1 1 1 # 267 # 695 # 1 #
ID=73_2;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.361
k141_124523||full_2 - VOG00933 - 0.00086 12.2
0.1 0.00089 12.1 0.1 1.1 1 0 0 1 1 1 1 # 162 # 440 # -1 #
ID=63_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.373
k141_62468||full_1 - VOG00940 - 1.2e-06 22.2
0.8 1.3e-06 22.0 0.8 1.0 1 0 0 1 1 1 1 # 1 # 249 # 1 #
ID=69_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.434
k141_185699||full_2 - VOG00957 - 7.4e-05 15.8
0.0 7.9e-05 15.7 0.0 1.1 1 0 0 1 1 1 1 # 138 # 419 # -1 #
ID=32_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.521
k141_124399||full_2 - VOG00960 - 0.0025 10.3
0.1 0.0029 10.1 0.1 1.0 1 0 0 1 1 1 1 # 341 # 574 # -1 #
ID=54_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.496
k141_309200||full_1 - VOG00974 - 7.5e-12 38.8
0.1 7.5e-12 38.8 0.1 1.0 1 0 0 1 1 1 1 # 1 # 312 # -1 #
ID=17_1;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.478
k141_123991||full_2 - VOG00974 - 2.7e-10 33.7
0.0 2.9e-10 33.6 0.0 1.0 1 0 0 1 1 1 1 # 227 # 577 # 1 #
ID=22_2;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.593
k141_185699||full_2 - VOG00991 - 0.00099 11.5
0.0 0.0012 11.2 0.0 1.0 1 0 0 1 1 1 1 # 138 # 419 # -1 #
ID=32_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.521
k141_309200||full_1 - VOG00996 - 0.00043 12.9
0.0 0.00043 12.9 0.0 1.0 1 0 0 1 1 1 1 # 1 # 312 # -1 #
ID=17_1;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.478
k141_185699||full_2 - VOG01030 - 0.00011 14.7
0.0 0.00013 14.4 0.0 1.1 1 0 0 1 1 1 1 # 138 # 419 # -1 #
ID=32_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.521
k141_124399||full_1 - VOG01030 - 0.00015 14.2
0.0 0.00015 14.2 0.0 1.2 1 0 0 1 1 1 1 # 1 # 369 # 1 #
ID=54_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.450
k141_124399||full_2 - VOG01030 - 0.0016 10.8
0.0 0.0016 10.8 0.0 1.0 1 0 0 1 1 1 1 # 341 # 574 # -1 #
ID=54_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.496
k141_247655||full_2 - VOG01031 - 0.0015 12.1
0.0 0.0019 11.8 0.0 1.1 1 0 0 1 1 1 1 # 290 # 433 # 1 #
ID=39_2;partial=01;start_type=ATG;rbs_motif=TATA;rbs_spacer=7bp;genetic_code=11;gc_
cont=0.403
k141_247678||lt2gene_1 - VOG01042 - 1.6e-12 40.9
0.1 1.6e-12 40.9 0.1 1.0 1 0 0 1 1 1 1 # 2 # 193 # 1 #
ID=93_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.401
k141_247999||full_2 - VOG01042 - 2.3e-12 40.3
0.0 2.3e-12 40.3 0.0 1.0 1 0 0 1 1 1 1 # 562 # 696 # -1 #
ID=67_2;partial=00;start_type=ATG;rbs_motif=ATA;rbs_spacer=7bp;genetic_code=11;gc_c
ont=0.511
k141_247678||lt2gene_2 - VOG01042 - 5.2e-10 32.6
0.2 5.2e-10 32.6 0.2 1.0 1 0 0 1 1 1 1 # 326 # 487 # 1 #
ID=93_2;partial=01;start_type=ATG;rbs_motif=AGxAG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.414
k141_247999||full_1 - VOG01042 - 4.9e-06 19.5
0.0 4.9e-06 19.5 0.0 1.1 1 0 0 1 1 1 1 # 1 # 195 # 1 #
ID=67_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.508
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/42.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/42.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/42.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:33:22 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_159||lt2gene_1 - VOG02758 - 1.1e-18 60.6
0.0 1.2e-18 60.5 0.0 1.0 1 0 0 1 1 1 1 # 3 # 497 # -1 #
ID=84_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.453
k141_248105||full_3 - VOG02791 - 0.00017 15.2
0.0 0.00017 15.1 0.0 1.0 1 0 0 1 1 1 1 # 355 # 498 # 1 #
ID=76_3;partial=01;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.451
k141_62468||full_1 - VOG02904 - 4.3e-09 28.9
0.3 4.5e-09 28.8 0.3 1.0 1 0 0 1 1 1 1 # 1 # 249 # 1 #
ID=69_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.434
k141_309234||lt2gene_2 - VOG02941 - 3.6e-05 16.9
0.0 3.9e-05 16.7 0.0 1.0 1 0 0 1 1 1 1 # 309 # 593 # -1 #
ID=85_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.523
k141_62468||full_1 - VOG02994 - 0.00021 14.5
0.4 0.00023 14.3 0.4 1.0 1 0 0 1 1 1 1 # 1 # 249 # 1 #
ID=69_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.434
k141_124338||lt2gene_1 - VOG03014 - 4.5e-07 23.4
0.0 5.2e-07 23.1 0.0 1.1 1 0 0 1 1 1 1 # 3 # 419 # 1 #
ID=96_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.621
k141_247999||full_3 - VOG03036 - 4.1e-20 66.2
0.2 4.5e-20 66.0 0.2 1.0 1 0 0 1 1 1 1 # 746 # 976 # 1 #
ID=67_3;partial=01;start_type=GTG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.316
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/47.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/47.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/47.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:31:48 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_123843||full_2 - ERF PF04404.12 1.4e-14 48.1
1.6 1.5e-14 48.0 1.6 1.0 1 0 0 1 1 1 1 # 209 # 364 # 1 #
ID=15_2;partial=01;start_type=ATG;rbs_motif=AAAAA;rbs_spacer=15bp;genetic_code=4;gc
_cont=0.519
k141_123843||full_1 - ERF PF04404.12 1.3e-12 41.6
0.0 1.3e-12 41.6 0.0 1.0 1 0 0 1 1 1 1 # 1 # 162 # -1 #
ID=15_1;partial=10;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=4;gc_
cont=0.426
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/6.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/6.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/6.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:33:06 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_247701||full_1 - Thymidylat_synt PF00303.19 4.8e-89 291.8
0.0 5.4e-89 291.6 0.0 1.0 1 0 0 1 1 1 1 # 1 # 534 # -1 #
ID=43_1;partial=10;start_type=ATG;rbs_motif=TAAAAA;rbs_spacer=12bp;genetic_code=11;
gc_cont=0.491
k141_186136||full_1 - TniB PF05621.11 0.0029 10.8
0.0 0.0037 10.5 0.0 1.2 1 0 0 1 1 1 1 # 1 # 354 # -1 #
ID=77_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.571
k141_185699||full_2 - TrwB_AAD_bind PF10412.9 0.0007 12.3
0.0 0.00074 12.3 0.0 1.1 1 0 0 1 1 1 1 # 138 # 419 # -1 #
ID=32_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.521
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/13.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/13.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/13.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:31:59 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_185699||full_2 - K16945 - 0.00081 11.9
0.0 0.00083 11.9 0.0 1.0 1 0 0 1 1 1 1 # 138 # 419 # -1 #
ID=32_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.521
k141_62056||full_2 - K17947 - 6.1e-07 22.1
0.0 6.9e-07 21.9 0.0 1.0 1 0 0 1 1 1 1 # 146 # 343 # -1 #
ID=27_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.505
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/35.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/35.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/35.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:33:19 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_185496||full_2 - K03763 - 2.8e-05 15.5
0.0 2.9e-05 15.5 0.0 1.0 1 0 0 1 1 1 1 # 122 # 382 # -1 #
ID=9_2;partial=00;start_type=GTG;rbs_motif=4Base/6BMM;rbs_spacer=13-
15bp;genetic_code=11;gc_cont=0.552
k141_124224||full_1 - K03977 - 7.7e-28 91.0
0.3 8.8e-28 90.8 0.3 1.0 1 0 0 1 1 1 1 # 1 # 159 # 1 #
ID=34_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.547
k141_124224||full_3 - K03977 - 0.00085 11.5
0.0 0.00085 11.5 0.0 1.0 1 0 0 1 1 1 1 # 452 # 637 # -1 #
ID=34_3;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.484
k141_185451||full_2 - K04074 - 0.00083 12.9
1.9 0.00092 12.8 1.9 1.0 1 0 0 1 1 1 1 # 616 # 762 # 1 #
ID=4_2;partial=00;start_type=GTG;rbs_motif=AGGA;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.483
k141_186136||full_1 - K04076 - 2e-07 23.7
0.0 2.1e-07 23.7 0.0 1.1 1 0 0 1 1 1 1 # 1 # 354 # -1 #
ID=77_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.571
k141_62047||full_1 - K04076 - 1.1e-06 21.3
0.0 1.2e-06 21.2 0.0 1.0 1 0 0 1 1 1 1 # 1 # 231 # -1 #
ID=25_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.532
k141_185699||full_2 - K04076 - 0.00043 12.7
0.0 0.00043 12.7 0.0 1.0 1 0 0 1 1 1 1 # 138 # 419 # -1 #
ID=32_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.521
k141_124399||full_2 - K04076 - 0.0023 10.4
0.0 0.0023 10.4 0.0 1.0 1 0 0 1 1 1 1 # 341 # 574 # -1 #
ID=54_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.496
k141_186136||full_1 - K04800 - 1.8e-05 17.4
0.0 2.5e-05 16.9 0.0 1.2 1 0 0 1 1 1 1 # 1 # 354 # -1 #
ID=77_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.571
k141_185699||full_2 - K04800 - 0.00089 11.8
0.0 0.001 11.6 0.0 1.1 1 0 0 1 1 1 1 # 138 # 419 # -1 #
ID=32_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.521
k141_186136||full_1 - K04801 - 2.9e-10 33.4
0.0 3.4e-10 33.2 0.0 1.1 1 0 0 1 1 1 1 # 1 # 354 # -1 #
ID=77_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.571
k141_124399||full_2 - K04801 - 6.6e-06 19.1
0.0 6.9e-06 19.0 0.0 1.1 1 0 0 1 1 1 1 # 341 # 574 # -1 #
ID=54_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.496
k141_783||full_1 - K05516 - 5.4e-12 39.2
0.2 5.5e-12 39.2 0.2 1.0 1 0 0 1 1 1 1 # 1 # 144 # -1 #
ID=79_1;partial=10;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.444
k141_186136||full_1 - K05715 - 0.00013 14.5
0.0 0.00017 14.1 0.0 1.1 1 0 0 1 1 1 1 # 1 # 354 # -1 #
ID=77_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.571
k141_185640||full_2 - K05939 - 8.6e-12 37.2
0.0 8.6e-12 37.2 0.0 1.0 1 0 0 1 1 1 1 # 394 # 678 # -1 #
ID=28_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.456
k141_185640||full_1 - K05939 - 1.4e-09 29.8
0.0 1.4e-09 29.8 0.0 1.0 1 0 0 1 1 1 1 # 150 # 431 # 1 #
ID=28_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.443
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/28.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/28.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/28.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:32:58 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_247649||full_1 - TIGR02622 TIGR02622 1.7e-08 27.6
0.0 1.7e-08 27.6 0.0 1.0 1 0 0 1 1 1 1 # 161 # 379 # -1 #
ID=38_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.521
k141_185699||full_2 - TIGR02640 TIGR02640 0.00027 14.2
0.0 0.0003 14.1 0.0 1.1 1 0 0 1 1 1 1 # 138 # 419 # -1 #
ID=32_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.521
k141_124399||full_2 - TIGR02640 TIGR02640 0.00089 12.5
0.0 0.00095 12.4 0.0 1.1 1 0 0 1 1 1 1 # 341 # 574 # -1 #
ID=54_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.496
k141_186136||full_1 - TIGR02640 TIGR02640 0.0034 10.6
0.0 0.0044 10.2 0.0 1.2 1 0 0 1 1 1 1 # 1 # 354 # -1 #
ID=77_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.571
k141_185699||full_2 - TIGR02768 TIGR02768 0.0023 9.9
0.0 0.0024 9.9 0.0 1.0 1 0 0 1 1 1 1 # 138 # 419 # -1 #
ID=32_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.521
k141_309679||full_1 - TIGR02784 TIGR02784 0.0039 9.2
0.1 0.0042 9.1 0.1 1.0 1 0 0 1 1 1 1 # 1 # 192 # 1 #
ID=70_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.312
k141_309160||full_1 - TIGR02835 TIGR02835 8.2e-05 15.8
0.2 9.5e-05 15.7 0.2 1.0 1 0 0 1 1 1 1 # 1 # 168 # 1 #
ID=11_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.488
k141_309160||full_2 - TIGR02835 TIGR02835 0.0007 12.8
0.1 0.0009 12.5 0.1 1.1 1 0 0 1 1 1 1 # 204 # 443 # -1 #
ID=11_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.463
k141_510||lt2gene_1 - TIGR02918 TIGR02918 0.00037 13.0
0.0 0.00056 12.4 0.0 1.2 1 0 0 1 1 1 1 # 1 # 843 # 1 #
ID=94_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.654
k141_185699||full_2 - TIGR03167 TIGR03167 0.0019 11.3
0.0 0.0022 11.1 0.0 1.1 1 0 0 1 1 1 1 # 138 # 419 # -1 #
ID=32_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.521
k141_124224||full_1 - TIGR03263 TIGR03263 0.00063 13.1
0.0 0.00065 13.1 0.0 1.0 1 0 0 1 1 1 1 # 1 # 159 # 1 #
ID=34_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.547
k141_247701||full_1 - TIGR03283 TIGR03283 5.3e-14 45.9
0.0 7.3e-14 45.5 0.0 1.3 1 0 0 1 1 1 1 # 1 # 534 # -1 #
ID=43_1;partial=10;start_type=ATG;rbs_motif=TAAAAA;rbs_spacer=12bp;genetic_code=11;
gc_cont=0.491
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/22.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/22.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/22.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:32:29 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/16.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/16.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/16.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:31:42 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_185699||full_2 - FAM015464 - 0.0039 9.2
0.1 0.0042 9.1 0.1 1.0 1 0 0 1 1 1 1 # 138 # 419 # -1 #
ID=32_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.521
k141_248079||full_2 - FAM024011 - 6.8 -0.7
32.3 0.28 3.9 26.0 1.8 1 1 1 2 2 2 0 # 267 # 695 # 1 #
ID=73_2;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.361
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/80.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/80.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/80.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:33:13 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_140||full_1 - K19690 - 7.2e-08 23.4
0.1 7.8e-08 23.3 0.1 1.0 1 0 0 1 1 1 1 # 1 # 360 # -1 #
ID=13_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.475
k141_247701||full_1 - K19796 - 3.3e-11 36.7
0.0 4.3e-11 36.3 0.0 1.1 1 0 0 1 1 1 1 # 1 # 534 # -1 #
ID=43_1;partial=10;start_type=ATG;rbs_motif=TAAAAA;rbs_spacer=12bp;genetic_code=11;
gc_cont=0.491
k141_556||full_2 - K19824 - 3.5e-09 30.8
0.6 4e-09 30.6 0.6 1.0 1 0 0 1 1 1 1 # 202 # 399 # 1 #
ID=52_2;partial=00;start_type=ATG;rbs_motif=TAAA;rbs_spacer=11bp;genetic_code=11;gc
_cont=0.465
k141_124224||full_1 - K19832 - 0.00093 11.2
0.0 0.001 11.0 0.0 1.1 1 0 0 1 1 1 1 # 1 # 159 # 1 #
ID=34_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.547
k141_247655||full_2 - K20388 - 0.00073 13.4
0.0 0.00079 13.3 0.0 1.1 1 0 0 1 1 1 1 # 290 # 433 # 1 #
ID=39_2;partial=01;start_type=ATG;rbs_motif=TATA;rbs_spacer=7bp;genetic_code=11;gc_
cont=0.403
k141_309160||full_1 - K20391 - 2.2e-07 24.2
0.0 2.6e-07 24.0 0.0 1.0 1 0 0 1 1 1 1 # 1 # 168 # 1 #
ID=11_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.488
k141_309160||full_2 - K20391 - 2.4e-06 20.8
0.0 2.7e-06 20.6 0.0 1.0 1 0 0 1 1 1 1 # 204 # 443 # -1 #
ID=11_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.463
k141_309160||full_1 - K20480 - 1e-09 32.2
0.1 1.2e-09 32.0 0.1 1.0 1 0 0 1 1 1 1 # 1 # 168 # 1 #
ID=11_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.488
k141_309160||full_2 - K20480 - 3e-09 30.7
0.0 3.6e-09 30.4 0.0 1.0 1 0 0 1 1 1 1 # 204 # 443 # -1 #
ID=11_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.463
k141_510||lt2gene_1 - K21002 - 0.0011 11.5
0.0 0.0019 10.7 0.0 1.3 1 0 0 1 1 1 1 # 1 # 843 # 1 #
ID=94_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.654
k141_247649||full_1 - K21211 - 0.001 11.9
0.0 0.0011 11.8 0.0 1.0 1 0 0 1 1 1 1 # 161 # 379 # -1 #
ID=38_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.521
k141_62056||full_2 - K21332 - 0.0011 11.9
0.0 0.0012 11.9 0.0 1.0 1 0 0 1 1 1 1 # 146 # 343 # -1 #
ID=27_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.505
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/37.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/37.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/37.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:31:40 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_309160||full_1 - TIGR00270 TIGR00270 1.7e-06 21.6
0.0 1.8e-06 21.5 0.0 1.0 1 0 0 1 1 1 1 # 1 # 168 # 1 #
ID=11_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.488
k141_309160||full_2 - TIGR00270 TIGR00270 5.9e-05 16.6
0.0 6e-05 16.6 0.0 1.1 1 0 0 1 1 1 1 # 204 # 443 # -1 #
ID=11_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.463
k141_123773||full_2 - TIGR00288 TIGR00288 0.0023 11.5
0.0 0.0024 11.4 0.0 1.0 1 0 0 1 1 1 1 # 141 # 278 # -1 #
ID=12_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.297
k141_247746||full_1 - TIGR01009 TIGR01009 0.00084 12.8
0.0 0.00095 12.7 0.0 1.1 1 0 0 1 1 1 1 # 1 # 192 # 1 #
ID=53_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.375
k141_247495||full_1 - TIGR01063 TIGR01063 9.5e-43 139.8
0.1 1e-42 139.7 0.1 1.0 1 0 0 1 1 1 1 # 1 # 339 # 1 #
ID=23_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.383
k141_124377||full_2 - TIGR01185 TIGR01185 0.0018 11.0
2.6 0.0021 10.8 2.6 1.0 1 0 0 1 1 1 1 # 234 # 536 # -1 #
ID=51_2;partial=00;start_type=ATG;rbs_motif=GGTG;rbs_spacer=8bp;genetic_code=11;gc_
cont=0.462
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/20.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/20.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/20.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:32:18 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_309674||full_1 - Pox_D5 PF03288.16 0.00012 16.4
0.3 0.00012 16.4 0.3 1.0 1 0 0 1 1 1 1 # 1 # 141 # -1 #
ID=68_1;partial=10;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.213
k141_124329||full_2 - Prophage_tail PF06605.11 4.7e-07 23.1
0.0 4.8e-07 23.1 0.0 1.0 1 0 0 1 1 1 1 # 161 # 499 # 1 #
ID=45_2;partial=00;start_type=ATG;rbs_motif=ATA;rbs_spacer=10bp;genetic_code=11;gc_
cont=0.472
k141_309146||full_2 - Radical_SAM PF04055.21 5.4e-05 17.4
1.0 5.4e-05 17.4 1.0 1.1 1 0 0 1 1 1 1 # 343 # 588 # -1 #
ID=10_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.598
k141_309160||full_1 - Rrf2 PF02082.20 5.4e-05 17.4
0.0 5.7e-05 17.3 0.0 1.1 1 0 0 1 1 1 1 # 1 # 168 # 1 #
ID=11_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.488
k141_309160||full_2 - Rrf2 PF02082.20 0.00038 14.6
0.0 0.00058 14.1 0.0 1.2 1 0 0 1 1 1 1 # 204 # 443 # -1 #
ID=11_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.463
k141_556||full_2 - Rubrerythrin PF02915.17 1.4e-18 61.4
1.7 1.6e-18 61.2 1.7 1.0 1 0 0 1 1 1 1 # 202 # 399 # 1 #
ID=52_2;partial=00;start_type=ATG;rbs_motif=TAAA;rbs_spacer=11bp;genetic_code=11;gc
_cont=0.465
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/11.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/11.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/11.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:33:10 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_309643||lt2gene_1 - YP_008408663@NC_022052 - 4.4e-24
78.6 0.0 2.2e-23 76.3 0.0 1.8 1 1 0 1 1 1 1 # 2 # 751 # -1
#
ID=99_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.591
k141_309160||full_2 - YP_008410247@NC_022066 - 0.00073 13.4
0.0 0.00089 13.1 0.0 1.1 1 0 0 1 1 1 1 # 204 # 443 # -1 #
ID=11_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.463
k141_22||full_2 - YP_008410763@NC_022069 - 0.00043 13.4
0.2 0.00043 13.4 0.2 1.1 1 0 0 1 1 1 1 # 184 # 405 # 1 #
ID=2_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc_
cont=0.559
k141_185578||full_1 - YP_008430979@NC_022088 - 0.24 5.1
9.8 0.049 7.4 4.7 2.1 1 1 1 2 2 2 0 # 22 # 144 # -1 #
ID=20_1;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.415
k141_248079||full_2 - YP_008772024@NC_022775 - 0.38 3.6
9.3 1.2 2.0 9.3 1.8 1 1 0 1 1 1 0 # 267 # 695 # 1 #
ID=73_2;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.361
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/74.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/74.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/74.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:32:16 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_124029||full_2 - FAM005535 - 4.2e-11 35.7
0.0 4.4e-11 35.7 0.0 1.0 1 0 0 1 1 1 1 # 220 # 465 # -1 #
ID=26_2;partial=00;start_type=TTG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.472
k141_124029||full_1 - FAM005535 - 0.00046 12.5
0.1 0.00046 12.5 0.1 1.0 1 0 0 1 1 1 1 # 1 # 165 # 1 #
ID=26_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.461
k141_124338||lt2gene_1 - FAM005977 - 7.6e-05 15.8
0.0 8.5e-05 15.6 0.0 1.1 1 0 0 1 1 1 1 # 3 # 419 # 1 #
ID=96_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.621
k141_185699||full_2 - FAM006044 - 0.0019 11.5
0.0 0.0022 11.3 0.0 1.1 1 0 0 1 1 1 1 # 138 # 419 # -1 #
ID=32_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.521
k141_186136||full_1 - FAM006091 - 1e-06 21.7
0.0 1.4e-06 21.3 0.0 1.2 1 0 0 1 1 1 1 # 1 # 354 # -1 #
ID=77_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.571
k141_124399||full_2 - FAM006091 - 0.00017 14.4
0.0 0.00019 14.2 0.0 1.1 1 0 0 1 1 1 1 # 341 # 574 # -1 #
ID=54_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.496
k141_186136||full_1 - FAM006109 - 4.9e-06 19.3
0.0 1.1e-05 18.1 0.0 1.5 2 0 0 2 2 2 1 # 1 # 354 # -1 #
ID=77_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.571
k141_186136||full_1 - FAM006185 - 3.6e-05 16.4
0.0 4.5e-05 16.1 0.0 1.1 1 0 0 1 1 1 1 # 1 # 354 # -1 #
ID=77_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.571
k141_124399||full_2 - FAM006185 - 0.0033 10.0
0.0 0.0035 9.9 0.0 1.1 1 0 0 1 1 1 1 # 341 # 574 # -1 #
ID=54_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.496
k141_247649||full_1 - FAM006262 - 0.0018 11.8
0.0 0.0018 11.7 0.0 1.1 1 0 0 1 1 1 1 # 161 # 379 # -1 #
ID=38_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.521
k141_309160||full_1 - FAM006315 - 4.2e-05 16.8
0.0 5e-05 16.6 0.0 1.0 1 0 0 1 1 1 1 # 1 # 168 # 1 #
ID=11_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.488
k141_247655||full_2 - FAM006315 - 0.0015 11.7
0.0 0.0016 11.6 0.0 1.1 1 0 0 1 1 1 1 # 290 # 433 # 1 #
ID=39_2;partial=01;start_type=ATG;rbs_motif=TATA;rbs_spacer=7bp;genetic_code=11;gc_
cont=0.403
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/78.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/78.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/78.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:33:05 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_123991||full_2 - K21502 - 5.5e-06 19.0
0.0 6.1e-06 18.9 0.0 1.0 1 0 0 1 1 1 1 # 227 # 577 # 1 #
ID=22_2;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.593
k141_309200||full_1 - K21502 - 7.5e-05 15.3
0.0 8.7e-05 15.0 0.0 1.0 1 0 0 1 1 1 1 # 1 # 312 # -1 #
ID=17_1;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.478
k141_779||full_1 - K21749 - 8.4e-05 15.1
0.1 8.4e-05 15.1 0.1 1.0 1 0 0 1 1 1 1 # 1 # 177 # -1 #
ID=78_1;partial=00;start_type=GTG;rbs_motif=GGxGG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.576
k141_204||full_2 - K22223 - 2.4e-05 17.6
0.1 2.6e-05 17.5 0.1 1.1 1 0 0 1 1 1 1 # 159 # 395 # 1 #
ID=19_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.274
k141_556||full_2 - K22737 - 5.7e-05 16.6
0.5 6e-05 16.5 0.5 1.0 1 0 0 1 1 1 1 # 202 # 399 # 1 #
ID=52_2;partial=00;start_type=ATG;rbs_motif=TAAA;rbs_spacer=11bp;genetic_code=11;gc
_cont=0.465
k141_510||lt2gene_1 - K22908 - 0.0007 12.2
0.0 0.001 11.7 0.0 1.2 1 0 0 1 1 1 1 # 1 # 843 # 1 #
ID=94_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.654
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/38.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/38.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/38.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:31:59 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_247655||full_2 - K14056 - 9.6e-07 22.3
0.0 1e-06 22.2 0.0 1.0 1 0 0 1 1 1 1 # 290 # 433 # 1 #
ID=39_2;partial=01;start_type=ATG;rbs_motif=TATA;rbs_spacer=7bp;genetic_code=11;gc_
cont=0.403
k141_309160||full_1 - K14056 - 1.1e-06 22.1
0.1 1.2e-06 22.0 0.1 1.0 1 0 0 1 1 1 1 # 1 # 168 # 1 #
ID=11_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.488
k141_309160||full_2 - K14056 - 4.3e-06 20.2
0.0 5.3e-06 19.9 0.0 1.1 1 0 0 1 1 1 1 # 204 # 443 # -1 #
ID=11_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.463
k141_123679||full_1 - K14059 - 2.3e-13 43.7
0.1 2.7e-13 43.4 0.1 1.0 1 0 0 1 1 1 1 # 1 # 396 # -1 #
ID=5_1;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.379
k141_185699||full_2 - K14572 - 0.00049 10.3
0.1 0.00058 10.1 0.1 1.0 1 0 0 1 1 1 1 # 138 # 419 # -1 #
ID=32_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.521
k141_309160||full_1 - K15539 - 0.0003 14.1
0.0 0.00032 14.1 0.0 1.0 1 0 0 1 1 1 1 # 1 # 168 # 1 #
ID=11_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.488
k141_247655||full_2 - K15546 - 1.5e-06 21.3
0.0 1.6e-06 21.2 0.0 1.0 1 0 0 1 1 1 1 # 290 # 433 # 1 #
ID=39_2;partial=01;start_type=ATG;rbs_motif=TATA;rbs_spacer=7bp;genetic_code=11;gc_
cont=0.403
k141_309160||full_1 - K15546 - 2.2e-05 17.5
0.0 2.3e-05 17.4 0.0 1.0 1 0 0 1 1 1 1 # 1 # 168 # 1 #
ID=11_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.488
k141_309160||full_2 - K15546 - 0.00036 13.5
0.0 0.00039 13.4 0.0 1.0 1 0 0 1 1 1 1 # 204 # 443 # -1 #
ID=11_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.463
k141_247700||full_2 - K15554 - 2.6e-07 23.1
0.0 2.8e-07 23.0 0.0 1.0 1 0 0 1 1 1 1 # 198 # 476 # -1 #
ID=42_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.502
k141_248025||full_1 - K15554 - 1.8e-05 17.1
0.0 1.8e-05 17.1 0.0 1.0 1 0 0 1 1 1 1 # 1 # 276 # 1 #
ID=71_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.576
k141_248031||full_2 - K15554 - 2.4e-05 16.6
0.0 3.1e-05 16.2 0.0 1.1 1 0 0 1 1 1 1 # 167 # 715 # 1 #
ID=72_2;partial=01;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.528
k141_247649||full_1 - K15856 - 4.4e-11 36.2
0.0 4.4e-11 36.2 0.0 1.0 1 0 0 1 1 1 1 # 161 # 379 # -1 #
ID=38_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.521
k141_62056||full_2 - K15856 - 9.2e-06 18.7
0.0 9.2e-06 18.7 0.0 1.0 1 0 0 1 1 1 1 # 146 # 343 # -1 #
ID=27_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.505
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/34.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/34.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/34.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:32:37 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_248079||full_2 - VOG10095 - 0.24 3.8
8.2 0.022 7.2 0.1 2.1 1 1 2 3 3 3 0 # 267 # 695 # 1 #
ID=73_2;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.361
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/53.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/53.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/53.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:32:19 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_556||full_2 - Ferritin PF00210.24 5.8e-08 26.6
0.5 6.2e-08 26.5 0.5 1.0 1 0 0 1 1 1 1 # 202 # 399 # 1 #
ID=52_2;partial=00;start_type=ATG;rbs_motif=TAAA;rbs_spacer=11bp;genetic_code=11;gc
_cont=0.465
k141_124576||full_2 - FeS_assembly_P PF01883.19 2.9e-06 21.3
0.0 4.5e-06 20.7 0.0 1.3 1 1 0 1 1 1 1 # 134 # 307 # -1 #
ID=66_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.523
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/7.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/7.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/7.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:32:05 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_309160||full_2 - K07110 - 4e-09 29.9
0.0 4.9e-09 29.6 0.0 1.0 1 0 0 1 1 1 1 # 204 # 443 # -1 #
ID=11_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.463
k141_309160||full_1 - K07110 - 2.3e-08 27.4
0.0 2.4e-08 27.4 0.0 1.0 1 0 0 1 1 1 1 # 1 # 168 # 1 #
ID=11_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.488
k141_247655||full_2 - K07110 - 0.00023 14.2
0.0 0.00023 14.2 0.0 1.0 1 0 0 1 1 1 1 # 290 # 433 # 1 #
ID=39_2;partial=01;start_type=ATG;rbs_motif=TATA;rbs_spacer=7bp;genetic_code=11;gc_
cont=0.403
k141_186136||full_1 - K07133 - 0.002 10.3
0.0 0.002 10.3 0.0 1.0 1 0 0 1 1 1 1 # 1 # 354 # -1 #
ID=77_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.571
k141_783||full_2 - K07291 - 0.00079 12.0
0.0 0.00084 11.9 0.0 1.0 1 0 0 1 1 1 1 # 176 # 400 # -1 #
ID=79_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.516
k141_301||full_2 - K07335 - 8.9e-26 84.8
0.0 1e-25 84.6 0.0 1.0 1 0 0 1 1 1 1 # 240 # 716 # 1 #
ID=24_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.484
k141_301||full_1 - K07335 - 8.2e-07 22.2
0.0 8.2e-07 22.2 0.0 1.0 1 0 0 1 1 1 1 # 1 # 225 # -1 #
ID=24_1;partial=10;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.409
k141_186136||full_1 - K07391 - 0.0011 10.9
0.1 0.0011 11.0 0.1 1.0 1 0 0 1 1 1 1 # 1 # 354 # -1 #
ID=77_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.571
k141_124399||full_2 - K07392 - 0.00024 13.9
0.0 0.00026 13.8 0.0 1.1 1 0 0 1 1 1 1 # 341 # 574 # -1 #
ID=54_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.496
k141_124399||full_2 - K07452 - 0.00044 12.8
0.0 0.00044 12.8 0.0 1.0 1 0 0 1 1 1 1 # 341 # 574 # -1 #
ID=54_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.496
k141_186136||full_1 - K07472 - 2.9e-07 23.3
0.0 3.7e-07 23.0 0.0 1.1 1 0 0 1 1 1 1 # 1 # 354 # -1 #
ID=77_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.571
k141_124399||full_2 - K07472 - 0.00082 11.9
0.0 0.00094 11.8 0.0 1.1 1 0 0 1 1 1 1 # 341 # 574 # -1 #
ID=54_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.496
k141_186136||full_1 - K07478 - 2.6e-07 23.3
0.0 3.1e-07 23.0 0.0 1.1 1 0 0 1 1 1 1 # 1 # 354 # -1 #
ID=77_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.571
k141_185699||full_2 - K07478 - 0.00036 12.9
0.1 0.00041 12.7 0.1 1.0 1 0 0 1 1 1 1 # 138 # 419 # -1 #
ID=32_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.521
k141_62047||full_1 - K07478 - 0.0015 10.9
0.0 0.0017 10.7 0.0 1.0 1 0 0 1 1 1 1 # 1 # 231 # -1 #
ID=25_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.532
k141_247636||full_2 - K07493 - 7e-29 94.5
0.1 8.1e-29 94.3 0.1 1.0 1 0 0 1 1 1 1 # 117 # 461 # -1 #
ID=35_2;partial=00;start_type=ATG;rbs_motif=AATAA;rbs_spacer=3bp;genetic_code=11;gc
_cont=0.470
k141_247636||full_1 - K07493 - 7.1e-15 48.4
0.7 7.3e-15 48.4 0.7 1.0 1 0 0 1 1 1 1 # 1 # 171 # 1 #
ID=35_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.509
k141_124118||full_1 - K07493 - 1.5e-11 37.5
0.1 2e-11 37.0 0.1 1.1 1 0 0 1 1 1 1 # 1 # 441 # -1 #
ID=30_1;partial=10;start_type=ATG;rbs_motif=ATA;rbs_spacer=8bp;genetic_code=11;gc_c
ont=0.408
k141_140||full_1 - K07679 - 3e-23 75.5
0.2 3.2e-23 75.4 0.2 1.0 1 0 0 1 1 1 1 # 1 # 360 # -1 #
ID=13_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.475
k141_185813||full_2 - K07679 - 1.4e-06 20.2
0.2 1.6e-06 20.1 0.2 1.0 1 0 0 1 1 1 1 # 340 # 654 # 1 #
ID=44_2;partial=01;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.486
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/30.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/30.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/30.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:32:52 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_204||full_2 - Pfam-B_17259 PB017259 0.00026 14.4
0.5 0.0011 12.3 0.1 2.0 2 0 0 2 2 2 1 # 159 # 395 # 1 #
ID=19_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.274
k141_185667||full_2 - Pfam-B_17398 PB017398 0.00017 15.1
0.0 0.0003 14.4 0.0 1.4 1 0 0 1 1 1 1 # 186 # 443 # -1 #
ID=29_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.581
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/19.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/19.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/19.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:32:56 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/58.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/58.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/58.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:32:32 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_247700||full_1 - VOG10862 - 0.00015 16.0
0.0 0.00016 15.8 0.0 1.1 1 0 0 1 1 1 1 # 1 # 153 # 1 #
ID=42_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.497
k141_185699||full_2 - VOG10985 - 5.8e-05 16.6
0.0 6.3e-05 16.5 0.0 1.1 1 0 0 1 1 1 1 # 138 # 419 # -1 #
ID=32_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.521
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/55.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/55.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/55.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:31:51 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/62.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/62.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/62.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:33:35 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_124338||lt2gene_1 - FAM008544 - 0.0017 10.6
0.0 0.0018 10.4 0.0 1.1 1 0 0 1 1 1 1 # 3 # 419 # 1 #
ID=96_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.621
k141_247636||full_2 - FAM008768 - 0.0025 11.5
0.0 0.0031 11.1 0.0 1.1 1 0 0 1 1 1 1 # 117 # 461 # -1 #
ID=35_2;partial=00;start_type=ATG;rbs_motif=AATAA;rbs_spacer=3bp;genetic_code=11;gc
_cont=0.470
k141_247700||full_2 - FAM010567 - 3.1e-05 15.8
0.0 3.1e-05 15.8 0.0 1.0 1 0 0 1 1 1 1 # 198 # 476 # -1 #
ID=42_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.502
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/79.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/79.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/79.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:33:04 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/59.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/59.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/59.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:33:19 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_185699||full_2 - K12083 - 0.0016 11.1
0.0 0.0016 11.1 0.0 1.0 1 0 0 1 1 1 1 # 138 # 419 # -1 #
ID=32_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.521
k141_62056||full_2 - K12453 - 0.00028 14.2
0.0 0.00028 14.2 0.0 1.0 1 0 0 1 1 1 1 # 146 # 343 # -1 #
ID=27_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.505
k141_62056||full_2 - K12454 - 6.4e-10 31.9
0.0 7e-10 31.7 0.0 1.0 1 0 0 1 1 1 1 # 146 # 343 # -1 #
ID=27_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.505
k141_247649||full_1 - K12454 - 8.5e-07 21.6
0.0 8.5e-07 21.6 0.0 1.0 1 0 0 1 1 1 1 # 161 # 379 # -1 #
ID=38_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.521
k141_62056||full_2 - K13306 - 0.00024 14.2
0.0 0.00026 14.0 0.0 1.0 1 0 0 1 1 1 1 # 146 # 343 # -1 #
ID=27_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.505
k141_186136||full_1 - K13419 - 0.0006 11.7
0.0 0.00068 11.5 0.0 1.0 1 0 0 1 1 1 1 # 1 # 354 # -1 #
ID=77_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.571
k141_247850||full_2 - K13581 - 0.0016 10.9
0.0 0.0016 10.9 0.0 1.0 1 0 0 1 1 1 1 # 144 # 353 # -1 #
ID=58_2;partial=00;start_type=ATG;rbs_motif=GGA/GAG/AGG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.352
k141_185640||full_1 - K13611 - 2.3e-08 24.4
0.0 6.2e-08 23.0 0.0 1.5 1 1 0 1 1 1 1 # 150 # 431 # 1 #
ID=28_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.443
k141_510||lt2gene_1 - K13684 - 0.0001 15.1
0.0 0.00014 14.7 0.0 1.1 1 0 0 1 1 1 1 # 1 # 843 # 1 #
ID=94_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.654
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/33.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/33.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/33.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:32:02 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_185699||full_2 - AAA_16 PF13191.6 3.9e-07 24.4
0.0 4e-07 24.4 0.0 1.1 1 0 0 1 1 1 1 # 138 # 419 # -1 #
ID=32_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.521
k141_186136||full_1 - AAA_16 PF13191.6 8.4e-05 16.8
0.0 0.00011 16.4 0.0 1.4 1 1 0 1 1 1 1 # 1 # 354 # -1 #
ID=77_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.571
k141_248031||full_2 - AAA_16 PF13191.6 0.00019 15.7
0.0 0.0003 15.0 0.0 1.3 1 0 0 1 1 1 1 # 167 # 715 # 1 #
ID=72_2;partial=01;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.528
k141_124399||full_2 - AAA_16 PF13191.6 0.00091 13.4
0.0 0.00091 13.4 0.0 1.1 1 0 0 1 1 1 1 # 341 # 574 # -1 #
ID=54_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.496
k141_62047||full_1 - AAA_16 PF13191.6 0.0015 12.8
0.1 0.0019 12.4 0.1 1.1 1 0 0 1 1 1 1 # 1 # 231 # -1 #
ID=25_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.532
k141_185699||full_2 - AAA_18 PF13238.6 8.1e-06 20.2
0.0 8.9e-06 20.1 0.0 1.1 1 0 0 1 1 1 1 # 138 # 419 # -1 #
ID=32_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.521
k141_124399||full_2 - AAA_18 PF13238.6 9.6e-05 16.8
0.1 0.00013 16.4 0.1 1.2 1 1 0 1 1 1 1 # 341 # 574 # -1 #
ID=54_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.496
k141_124399||full_1 - AAA_2 PF07724.14 6.6e-26 85.2
0.0 7.4e-26 85.1 0.0 1.0 1 0 0 1 1 1 1 # 1 # 369 # 1 #
ID=54_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.450
k141_124399||full_2 - AAA_2 PF07724.14 1.3e-20 68.0
0.0 1.3e-20 68.0 0.0 1.0 1 0 0 1 1 1 1 # 341 # 574 # -1 #
ID=54_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.496
k141_62047||full_2 - AAA_2 PF07724.14 2.7e-19 63.7
0.0 3.2e-19 63.5 0.0 1.0 1 0 0 1 1 1 1 # 321 # 539 # 1 #
ID=25_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.507
k141_248025||full_1 - AAA_21 PF13304.6 4.9e-05 17.0
0.0 5.1e-05 17.0 0.0 1.0 1 0 0 1 1 1 1 # 1 # 276 # 1 #
ID=71_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.576
k141_247700||full_2 - AAA_21 PF13304.6 0.00042 14.0
0.1 0.00045 13.9 0.1 1.1 1 0 0 1 1 1 1 # 198 # 476 # -1 #
ID=42_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.502
k141_185699||full_2 - AAA_22 PF13401.6 8.9e-06 19.9
0.0 1e-05 19.6 0.0 1.1 1 0 0 1 1 1 1 # 138 # 419 # -1 #
ID=32_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.521
k141_124399||full_2 - AAA_22 PF13401.6 0.00056 14.0
0.0 0.00064 13.8 0.0 1.2 1 0 0 1 1 1 1 # 341 # 574 # -1 #
ID=54_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.496
k141_248031||full_2 - AAA_22 PF13401.6 0.00075 13.6
0.0 0.001 13.2 0.0 1.4 1 1 0 1 1 1 1 # 167 # 715 # 1 #
ID=72_2;partial=01;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.528
k141_124399||full_2 - AAA_23 PF13476.6 0.00025 15.4
0.0 0.00026 15.4 0.0 1.1 1 0 0 1 1 1 1 # 341 # 574 # -1 #
ID=54_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.496
k141_248031||full_2 - AAA_23 PF13476.6 0.0031 11.8
0.0 0.0047 11.2 0.0 1.2 1 0 0 1 1 1 1 # 167 # 715 # 1 #
ID=72_2;partial=01;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.528
k141_185699||full_2 - AAA_29 PF13555.6 0.00037 14.1
0.1 0.00077 13.1 0.0 1.5 2 0 0 2 2 2 1 # 138 # 419 # -1 #
ID=32_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.521
k141_248031||full_2 - AAA_29 PF13555.6 0.0007 13.2
0.0 0.0012 12.4 0.0 1.4 1 0 0 1 1 1 1 # 167 # 715 # 1 #
ID=72_2;partial=01;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.528
k141_124399||full_1 - AAA_5 PF07728.14 3.1e-07 24.3
0.0 3.6e-07 24.1 0.0 1.2 1 0 0 1 1 1 1 # 1 # 369 # 1 #
ID=54_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.450
k141_124399||full_2 - AAA_5 PF07728.14 1.2e-05 19.1
0.0 1.4e-05 19.0 0.0 1.1 1 0 0 1 1 1 1 # 341 # 574 # -1 #
ID=54_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.496
k141_185699||full_2 - AAA_5 PF07728.14 0.0001 16.2
0.1 0.00013 15.8 0.1 1.2 1 0 0 1 1 1 1 # 138 # 419 # -1 #
ID=32_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.521
k141_186136||full_1 - AAA_5 PF07728.14 0.00062 13.6
0.0 0.00084 13.2 0.0 1.3 1 0 0 1 1 1 1 # 1 # 354 # -1 #
ID=77_1;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.571
k141_62410||full_3 - Abhydrolase_6 PF12697.7 4.2e-05 18.0
0.0 5.1e-05 17.8 0.0 1.2 1 0 0 1 1 1 1 # 481 # 798 # -1 #
ID=62_3;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.481
k141_62410||full_1 - Abhydrolase_6 PF12697.7 0.0016 12.9
0.0 0.0016 12.9 0.0 1.0 1 0 0 1 1 1 1 # 1 # 198 # 1 #
ID=62_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.444
k141_186008||full_2 - Arm-DNA-bind_5 PF17293.2 1.3e-09 32.2
0.0 1.6e-09 32.0 0.0 1.1 1 0 0 1 1 1 1 # 425 # 649 # 1 #
ID=64_2;partial=00;start_type=GTG;rbs_motif=AGGAG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.493
k141_186008||full_1 - Arm-DNA-bind_5 PF17293.2 4.3e-06 21.0
0.0 4.5e-06 20.9 0.0 1.1 1 0 0 1 1 1 1 # 1 # 219 # 1 #
ID=64_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.530
k141_247564||full_1 - Arm-DNA-bind_5 PF17293.2 9.4e-05 16.7
0.7 0.00017 15.9 0.7 1.6 1 1 0 1 1 1 1 # 446 # 811 # -1 #
ID=31_1;partial=00;start_type=ATG;rbs_motif=TAA;rbs_spacer=12bp;genetic_code=11;gc_
cont=0.377
k141_185699||full_2 - ATP_bind_1 PF03029.17 0.0014 12.3
0.1 0.0017 11.9 0.1 1.1 1 0 0 1 1 1 1 # 138 # 419 # -1 #
ID=32_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.521
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/1.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/1.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/1.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:33:20 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_510||lt2gene_1 - VOG13459 - 0.0015 12.7
0.0 0.004 11.4 0.0 1.6 2 0 0 2 2 2 1 # 1 # 843 # 1 #
ID=94_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.654
k141_248079||full_2 - VOG13763 - 1e-06 22.9
29.7 6.5e-06 20.3 10.7 2.3 1 1 1 2 2 2 2 # 267 # 695 # 1 #
ID=73_2;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.361
k141_248079||full_2 - VOG13806 - 0.019 8.6
7.3 0.092 6.4 7.3 2.0 1 1 0 1 1 1 0 # 267 # 695 # 1 #
ID=73_2;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.361
k141_309565||full_1 - VOG14152 - 1.8e-09 31.0
15.2 3.5e-09 30.1 15.2 1.5 1 1 0 1 1 1 1 # 1 # 480 # 1 #
ID=57_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.567
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/60.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/60.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/60.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:32:43 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_185699||full_2 - VOG05379 - 0.00044 12.1
0.0 0.00046 12.0 0.0 1.0 1 0 0 1 1 1 1 # 138 # 419 # -1 #
ID=32_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.521
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/51.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/51.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/51.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:31:54 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_159||lt2gene_1 - VOG01099 - 0.0007 14.0
3.0 0.0015 13.0 3.0 1.6 1 1 0 1 1 1 1 # 3 # 497 # -1 #
ID=84_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.453
k141_185699||full_2 - VOG01144 - 2.9e-06 20.7
0.0 3.1e-06 20.6 0.0 1.1 1 0 0 1 1 1 1 # 138 # 419 # -1 #
ID=32_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.521
k141_309385||full_1 - VOG01156 - 0.011 9.9
7.9 0.06 7.5 7.9 2.0 1 1 0 1 1 1 0 # 1 # 309 # 1 #
ID=33_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.340
k141_309200||full_1 - VOG01358 - 0.00033 13.1
0.0 0.00033 13.1 0.0 1.0 1 0 0 1 1 1 1 # 1 # 312 # -1 #
ID=17_1;partial=00;start_type=ATG;rbs_motif=GGxGG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.478
k141_123991||full_2 - VOG01358 - 0.0029 9.9
0.0 0.0031 9.8 0.0 1.1 1 0 0 1 1 1 1 # 227 # 577 # 1 #
ID=22_2;partial=00;start_type=GTG;rbs_motif=GGAG/GAGG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.593
k141_309679||full_1 - VOG01395 - 1.1e-11 38.8
0.6 1.3e-11 38.5 0.6 1.0 1 0 0 1 1 1 1 # 1 # 192 # 1 #
ID=70_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.312
k141_309679||full_2 - VOG01395 - 0.00015 15.2
1.2 0.00016 15.2 1.2 1.0 1 0 0 1 1 1 1 # 165 # 398 # -1 #
ID=70_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.321
k141_309679||full_1 - VOG01411 - 7.4e-06 19.3
0.1 8e-06 19.2 0.1 1.0 1 0 0 1 1 1 1 # 1 # 192 # 1 #
ID=70_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.312
k141_123679||full_1 - VOG01429 - 3.3e-07 23.3
0.0 4.1e-07 23.0 0.0 1.1 1 0 0 1 1 1 1 # 1 # 396 # -1 #
ID=5_1;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.379
k141_309499||full_1 - VOG01457 - 0.00043 12.9
0.0 0.00049 12.7 0.0 1.1 1 0 0 1 1 1 1 # 260 # 469 # -1 #
ID=46_1;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.233
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/43.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/43.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/43.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:33:11 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_247495||full_1 - FAM000358 - 3.9e-05 16.2
0.0 4.4e-05 16.0 0.0 1.1 1 0 0 1 1 1 1 # 1 # 339 # 1 #
ID=23_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.383
k141_185699||full_2 - FAM000772 - 0.00014 13.0
0.0 0.00016 12.8 0.0 1.0 1 0 0 1 1 1 1 # 138 # 419 # -1 #
ID=32_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.521
k141_247701||full_1 - FAM001127 - 2.5e-86 284.4
0.7 3.3e-86 284.0 0.7 1.2 1 0 0 1 1 1 1 # 1 # 534 # -1 #
ID=43_1;partial=10;start_type=ATG;rbs_motif=TAAAAA;rbs_spacer=12bp;genetic_code=11;
gc_cont=0.491
k141_124523||full_2 - FAM001519 - 4.5e-06 20.0
0.2 6.6e-06 19.4 0.1 1.3 1 1 0 1 1 1 1 # 162 # 440 # -1 #
ID=63_2;partial=01;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.373
k141_124523||full_1 - FAM001519 - 4.8e-06 19.9
0.3 5.5e-06 19.7 0.3 1.1 1 0 0 1 1 1 1 # 1 # 270 # 1 #
ID=63_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.359
k141_185699||full_2 - FAM001681 - 1.6e-12 40.6
0.1 1.8e-12 40.4 0.1 1.0 1 0 0 1 1 1 1 # 138 # 419 # -1 #
ID=32_2;partial=00;start_type=ATG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.521
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/76.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/76.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/76.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:31:38 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_62017||full_1 - YP_007003499@NC_019488 - 0.0012 13.0
0.0 0.0015 12.6 0.0 1.1 1 0 0 1 1 1 1 # 1 # 189 # 1 #
ID=21_1;partial=10;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.587
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/72.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/72.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/72.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:32:35 2024
# [ok]
# --- full sequence
---- --- best 1 domain ---- --- domain number estimation ----
# target name accession query name accession E-value score
bias E-value score bias exp reg clu ov env dom rep inc description of target
#------------------- ---------- -------------------- ---------- --------- ------
----- --------- ------ ----- --- --- --- --- --- --- --- ---
---------------------
k141_248079||full_2 - VOG04438 - 0.002 10.2
16.0 0.0031 9.6 14.6 1.6 1 1 0 1 1 1 1 # 267 # 695 # 1 #
ID=73_2;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.361
k141_248079||full_2 - VOG04471 - 0.00033 13.1
12.1 0.00068 12.0 12.2 1.4 1 1 0 1 1 1 1 # 267 # 695 # 1 #
ID=73_2;partial=00;start_type=GTG;rbs_motif=None;rbs_spacer=None;genetic_code=11;gc
_cont=0.361
k141_510||lt2gene_1 - VOG04570 - 7.6e-06 19.6
0.0 1.1e-05 19.0 0.0 1.2 1 0 0 1 1 1 1 # 1 # 843 # 1 #
ID=94_1;partial=11;start_type=Edge;rbs_motif=None;rbs_spacer=None;genetic_code=11;g
c_cont=0.654
k141_62278||full_2 - VOG04859 - 0.00043 14.3
0.1 0.00092 13.2 0.1 1.5 1 1 1 2 2 2 1 # 316 # 699 # -1 #
ID=48_2;partial=00;start_type=ATG;rbs_motif=AGxAGG/AGGxGG;rbs_spacer=5-
10bp;genetic_code=11;gc_cont=0.367
#
# Program: hmmsearch
# Version: 3.3.2 (Nov 2020)
# Pipeline mode: SEARCH
# Query file: /checkv-db/checkv-db-v1.5/hmm_db/checkv_hmms/50.hmm
# Target file:
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Option settings: hmmsearch -o /dev/null --tblout
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/hmmsearch/50.hmmout --noali -E 10 --cpu 0 /checkv-db/checkv-
db-v1.5/hmm_db/checkv_hmms/50.hmm
/storage/diepht/vn-phage-api/app/data/output/checkv/results_8ce94ec1-5578-40f1-
8a32-d2705ced100c/tmp/proteins.faa
# Current dir: /checkv
# Date: Wed Dec 11 18:33:34 2024
# [ok]