3
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Sugandha Singh
Department of Computer Science
Babasaheb Bhimrao Ambedkar University
Vidya Vihar, Rae Bareli Road, Lucknow (U.P.) 226025, INDIA
[email protected]
Vipin Saxena
Department of Computer Science
Babasaheb Bhimrao Ambedkar University
Vidya Vihar, Rae Bareli Road, Lucknow (U.P.) 226025, INDIA
[email protected]
Abstract – Manual prediction of brain tumors is a time-consuming and subjective task, reliant on radiologists' expertise, leading to
potential inaccuracies. In response, this study proposes an automated solution utilizing a Convolutional Neural Network (CNN) for brain
tumor classification, achieving an impressive accuracy of 98.89%. Following classification, a hybrid approach, integrating graph-based
and threshold segmentation techniques, accurately locates the tumor region in magnetic resonance (MR) brain images across sagittal,
coronal, and axial views. Comparative analysis with existing research papers validates the effectiveness of the proposed method, and
similarity coefficients, including a Bfscore of 1 and a Jaccard similarity of 93.86%, attest to the high concordance between segmented
images and ground truth.
Keywords: tumor images, graph-based approach, threshold segmentation, CNN, tumor identification, meningioma
3. PROBLEM STATEMENT
Table 1. Dataset specification The FLAIR image in MRI is notable for its similarities
Data Specification
to T2-weighted imaging regarding brain tissue inten-
sities, with the key distinction being the appearance
Dataset source Safdarjung, Medanta and SGPGI Hospitals
of cerebrospinal fluid (CSF) as dark rather than bright.
Image Format DICOM It achieves this by selectively suppressing the signals
Size of Images 224 x 224 from fluids through the use of long echo (TE) and rep-
No. of Classes Two
etition (TR) times.
Name of Classes Tumor, No-tumor In FLAIR images, grey matter appears brighter than
Name of Sequence T1, T2, FLAIR, T1+C
white matter, and CSF stands out as dark. This particular
characteristic makes FLAIR sequences a valuable tool
Train 80%
for the assessment of various brain disorders, including
Test 20% infarction, hemorrhage, and head traumas. Addition-
ally, FLAIR imaging has the added benefit of reducing
In Table 2 the demographic details of patients with cerebrospinal fluid production. An illustrative example
three brain tumor categories including atypical menin- of the axial view of a FLAIR image is depicted in Fig. 3.
gioma, glioma, and schwannoma, along with normal
brain MRI images. The patient data has been collected
from radiologists, accompanied by authorized reports Tumor
and the consent of both patients and, their attendants. (bright) CSF
(dark)
Table 2. Demographic details of patients
Patient Hospital Age Gender Category Fig. 3. Axial view of FLAIR sequence
Patient#1 Medanta 58 Female Glioma
4.2.2. T1 image
Patient#2 SGPGI 54 Male Schwannoma
Patient#3 Safdarjung 62 Female Atypical Meningioma In the T1 sequence, tissue intensities reflect T1, which is
the long relaxation time. On T1 scans, fatty tissue appears
Patient#4 SGPGI 45 Female Normal brain
bright, but CSF with no fat appears dark. The T1 sequence
produces short TE and TR times, which darkens the CSF.
4.2. MRI imaging sequences The axial view of the T1 image is represented in Fig. 4.
Very Long/
FLAIR Hypointense Grey White
Very Long
Start
[Step 1] Input MRI brain image (I) from datasets
[Step 2] Check for the presence of a tumor
(Classification)
[Tumor Present]
[Step 3] Partition Image (I1, I2, ..., In)
[Step 4] Determine the number of partitions
(n) using felzenswalb()
[Step 5] Cluster the Partition Images based on
Image grid (k) [300 <= k <= 1000]
[Step 6] Set Parameters (S):
- Image (Height, Width), Scale: 350
- Sigma: 0.2, Min_Size: 20
- Threshold T >= 80
[Step 7] Compute the approximate distance (a) (b) (c)
(D_T) of Pixels of Tumors Image
Fig. 12. Brain tumor segmentation using a hybrid
[Step 8] Return the final segmentation result approach: (a) Original images, (b) Graph-based
[No Tumor] segmentation, (c) Hybrid approach
[Step 9] Return the result “No Tumor Detected”
End 5. EVALUATION METRICS AND RESULTS
In the algorithm, select MRI brain images as input The proposed method of classification and segmen-
from the dataset for tumor segmentation. The input tation is implemented on a computer with an intel core
image is partitioned into ‘n’ numbers of segments us- i5 11th generation processor unit with 8GB RAM, oper-
ing the Felzenszwalb() module. The partitioned image ating at a frequency of 2.40 GHz, and NVIDIA GEFORCE
is clustered based on the image grid (k) with a range GTX, using Python programming language. The results
of 300 >= k <= 1000 and set parameters (S) for image in the research work are discussed.
(I) such as to scale indicate the largeness of clusters, To calculate accuracy, a confusion matrix is created
sigma for smoothening of the image, min_size defines for classifying models and evaluating the segmenta-
the size of the output image and set threshold T >= 80 tion outcomes of the proposed method.
for segmentation. After setting parameters, compute
the approximate distance (D_T) of pixels of the tumor (7)
image. Finally, the result of Z is computed.
The observation result of testing images is shown in (8)
Fig. 12 column-wise.
(9)
(10)
5.1. Results
0.92236 0.88438
0.88353 0.88912
0.56858 0.6722
0.87662 0.72371
6. DISCUSSION
Table 5. Performance comparison between the proposed method and previous work
Author Total images Classification method Classifier Segmentation Accuracy F1 Score Recall Precision
Zhang et al. 2D-DWT level 3
66 BPNN NA 98.02% x X x
[20] decomposition, DWT
Selvaraj et al.
1100 GLCM-4 LS-SVM KNN NA 96% x X x
[21]
Al Kadi et al. Histopathological
320 FCM NA 92% x X x
[22] features
Muezzinoglu Multi feature
3264 ResNet50 NA 98.10% 98.01% 98.15% 97.91
et al. [23] selector and KNN
Georgiardis et Histogram 4, LCM-22, 93%,
67 LSFT-PNN NA 75.65% 79% 88%
al. [24] GRLM-10 83.33%
Proposed Graph-based
884 CNN Binary 98.89% - 98.14% 98.43%
Method and Threshold
7. CONCLUSION AND FUTURE WORK Dilated Convolution Filter", IEEE Access, Vol. 9,
2021, pp. 168703-168714.
The proposed segmentation technique, the hybrid
approach, aims to more accurately locate tumor re- [3] D. Deb, S. Roy, “Brain tumor detection based on
gions while achieving high classification accuracy. The
hybrid deep neural network in MRI by adaptive
presented work utilized an MRI brain tumor dataset,
achieving a notable 98.89% accuracy using a 2D CNN squirrel search optimization”, Multimedia Tools
model. Segmentation similarity coefficients, includ- and Applications, Vol. 80, 2021, pp. 2621-2645.
ing a Bfscore of 1 and a Jaccard coefficient of 93.86%,
underscore the effectiveness of our approach in tu- [4] R. Ranjbarzadeh, K. A. Bagherian, G. S. Jafarzadeh
mor detection and segmentation. This method offers et al. “Brain tumor segmentation based on deep
a promising avenue for future research, with plans to learning and an attention mechanism using MRI
expand the dataset, incorporate more samples, and ex-
multi-modalities brain images”, Scientific Reports,
plore additional techniques for enhancing brain tumor
location and diagnosis. Vol. 11, 2021, p. 10930.