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Multiple disease prediction system - diabetes.ipynb

File

Multiple disease prediction system - heart.ipynb

File

Multiple disease prediction system - Parkinsons.ipynb

File

Tomorrow, I have my interview. I have this project to describe. The name of the project is 'Multiple
Disease Prediction Model.' Please help me understand each file here. I've another file named app.py
whose code is:
import os
import pickle
import streamlit as st
from streamlit_option_menu import option_menu

# Set page configuration

st.set_page_config(page_title="Health Assistant",
layout="wide",
page_icon=" ") 🧑‍⚕️
# getting the working directory of the main.py
working_dir = os.path.dirname(os.path.abspath(__file__))

# loading the saved models

diabetes_model = pickle.load(open(f'{working_dir}/saved_models/diabetes_model.sav', 'rb'))

heart_disease_model = pickle.load(open(f'{working_dir}/saved_models/heart_disease_model.sav',
'rb'))

parkinsons_model = pickle.load(open(f'{working_dir}/saved_models/parkinsons_model.sav', 'rb'))

# sidebar for navigation

with st.sidebar:
selected = option_menu('Multiple Disease Prediction System',

['Diabetes Prediction',
'Heart Disease Prediction',
'Parkinsons Prediction'],
menu_icon='hospital-fill',
icons=['activity', 'heart', 'person'],

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 default_index=0)

# Diabetes Prediction Page

if selected == 'Diabetes Prediction':

# page title
st.title('Diabetes Prediction using ML')

# getting the input data from the user

col1, col2, col3 = st.columns(3)

with col1:
Pregnancies = st.text_input('Number of Pregnancies')

with col2:
Glucose = st.text_input('Glucose Level')

with col3:
BloodPressure = st.text_input('Blood Pressure value')

with col1:
SkinThickness = st.text_input('Skin Thickness value')

with col2:
Insulin = st.text_input('Insulin Level')

with col3:
BMI = st.text_input('BMI value')

with col1:
DiabetesPedigreeFunction = st.text_input('Diabetes Pedigree Function value')

with col2:
Age = st.text_input('Age of the Person')

# code for Prediction

diab_diagnosis = ''

# creating a button for Prediction

if st.button('Diabetes Test Result'):

user_input = [Pregnancies, Glucose, BloodPressure, SkinThickness, Insulin,

BMI, DiabetesPedigreeFunction, Age]

user_input = [float(x) for x in user_input]

diab_prediction = diabetes_model.predict([user_input])

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 if diab_prediction[0] == 1:
diab_diagnosis = 'The person is diabetic'
else:
diab_diagnosis = 'The person is not diabetic'

st.success(diab_diagnosis)

# Heart Disease Prediction Page

if selected == 'Heart Disease Prediction':

# page title
st.title('Heart Disease Prediction using ML')

col1, col2, col3 = st.columns(3)

with col1:
age = st.text_input('Age')

with col2:
sex = st.text_input('Sex')

with col3:
cp = st.text_input('Chest Pain types')

with col1:
trestbps = st.text_input('Resting Blood Pressure')

with col2:
chol = st.text_input('Serum Cholestoral in mg/dl')

with col3:
fbs = st.text_input('Fasting Blood Sugar > 120 mg/dl')

with col1:
restecg = st.text_input('Resting Electrocardiographic results')

with col2:
thalach = st.text_input('Maximum Heart Rate achieved')

with col3:
exang = st.text_input('Exercise Induced Angina')

with col1:
oldpeak = st.text_input('ST depression induced by exercise')

with col2:
slope = st.text_input('Slope of the peak exercise ST segment')

with col3:
ca = st.text_input('Major vessels colored by flourosopy')

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 with col1:
thal = st.text_input('thal: 0 = normal; 1 = fixed defect; 2 = reversable defect')

# code for Prediction

heart_diagnosis = ''

# creating a button for Prediction

if st.button('Heart Disease Test Result'):

user_input = [age, sex, cp, trestbps, chol, fbs, restecg, thalach, exang, oldpeak, slope, ca, thal]

user_input = [float(x) for x in user_input]

heart_prediction = heart_disease_model.predict([user_input])

if heart_prediction[0] == 1:
heart_diagnosis = 'The person is having heart disease'
else:
heart_diagnosis = 'The person does not have any heart disease'

st.success(heart_diagnosis)

# Parkinson's Prediction Page

if selected == "Parkinsons Prediction":

# page title
st.title("Parkinson's Disease Prediction using ML")

col1, col2, col3, col4, col5 = st.columns(5)

with col1:
fo = st.text_input('MDVP:Fo(Hz)')

with col2:
fhi = st.text_input('MDVP:Fhi(Hz)')

with col3:
flo = st.text_input('MDVP:Flo(Hz)')

with col4:
Jitter_percent = st.text_input('MDVP:Jitter(%)')

with col5:
Jitter_Abs = st.text_input('MDVP:Jitter(Abs)')

with col1:
RAP = st.text_input('MDVP:RAP')

with col2:
PPQ = st.text_input('MDVP:PPQ')
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 with col3:
DDP = st.text_input('Jitter:DDP')

with col4:
Shimmer = st.text_input('MDVP:Shimmer')

with col5:
Shimmer_dB = st.text_input('MDVP:Shimmer(dB)')

with col1:
APQ3 = st.text_input('Shimmer:APQ3')

with col2:
APQ5 = st.text_input('Shimmer:APQ5')

with col3:
APQ = st.text_input('MDVP:APQ')

with col4:
DDA = st.text_input('Shimmer:DDA')

with col5:
NHR = st.text_input('NHR')

with col1:
HNR = st.text_input('HNR')

with col2:
RPDE = st.text_input('RPDE')

with col3:
DFA = st.text_input('DFA')

with col4:
spread1 = st.text_input('spread1')

with col5:
spread2 = st.text_input('spread2')

with col1:
D2 = st.text_input('D2')

with col2:
PPE = st.text_input('PPE')

# code for Prediction

parkinsons_diagnosis = ''

# creating a button for Prediction

if st.button("Parkinson's Test Result"):
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 user_input = [fo, fhi, flo, Jitter_percent, Jitter_Abs,
RAP, PPQ, DDP,Shimmer, Shimmer_dB, APQ3, APQ5,
APQ, DDA, NHR, HNR, RPDE, DFA, spread1, spread2, D2, PPE]

user_input = [float(x) for x in user_input]

parkinsons_prediction = parkinsons_model.predict([user_input])

if parkinsons_prediction[0] == 1:
parkinsons_diagnosis = "The person has Parkinson's disease"
else:
parkinsons_diagnosis = "The person does not have Parkinson's disease"

st.success(parkinsons_diagnosis)

To assist you in understanding your project, "Multiple Disease Prediction Model," I'll explain the code in
your `app.py` file, along with analyzing the three notebooks (`diabetes.ipynb`, `heart.ipynb`, and
`Parkinsons.ipynb`) you've provided. These components are likely interconnected.

Overview of `app.py`

The `app.py` file acts as the frontend interface using Streamlit. Its main functions:

1. Load pre-trained machine learning models from serialized files (`.sav`) stored in the
`saved_models` directory.
2. Provide an interactive interface for predicting:
Diabetes
Heart Disease
Parkinson's Disease
3. Allow navigation between disease prediction pages using a sidebar menu.

Key Sections:

1. Model Loading: The models (`diabetes_model`, `heart_disease_model`, `parkinsons_model`) are

loaded using Python's `pickle` library.

2. Sidebar Navigation: The sidebar enables switching between the three disease prediction
interfaces.

3. Prediction Pages: Each page collects user input (medical features) and passes it to the
corresponding ML model to predict the likelihood of the disease.
4. Prediction Logic:
Collect user input via `st.text_input()`.
Convert inputs to numerical format (`float()`).
Use the `.predict()` method of the loaded models to make predictions.
Display the result on the page.

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Next Steps

I’ll now review the notebooks to:

1. Identify how the ML models were trained.

2. Understand the features and algorithms used.
3. Ensure compatibility with `app.py`.

Let me start analyzing the notebooks and summarize their content.

The initial inspection of the notebooks reveals the following:

1. Diabetes Notebook:
Imports libraries like `numpy`, `pandas`, `scikit-learn`, and `svm`.
Loads a dataset named `diabetes.csv`.
Uses the SVM (Support Vector Machine) algorithm to train the model.
2. Heart Disease Notebook:
Imports similar libraries, with a focus on `LogisticRegression` for model training.
Loads a dataset named `heart.csv`.
Implements logistic regression for prediction.
3. Parkinson's Disease Notebook:
Similar imports and uses SVM for training.
Loads a dataset named `parkinsons.csv`.

Next Steps:

I will:

Analyze how each dataset is preprocessed.

Review the steps for training and saving the models.
Confirm that the saved models align with those used in `app.py`.

Let me proceed to extract and summarize the preprocessing and model training logic. ​

I have extracted the relevant preprocessing and model training steps from each notebook. Each
notebook contains 7 key code blocks related to these steps. Let me summarize the key points for each:

Diabetes Prediction Model

1. Preprocessing:
Loads `diabetes.csv` and splits data into features and target (`Outcome`).
Uses `train_test_split` to create training and testing datasets.
2. Model Training:
Trains an SVM classifier on the training data.
Evaluates accuracy using `accuracy_score`.
3. Model Saving:
Saves the trained model as a `.sav` file using `pickle.dump`.

Heart Disease Prediction Model

1. Preprocessing:

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 Loads `heart.csv` and splits data into features and target (`target`).
Splits the dataset into training and testing sets.
2. Model Training:
Trains a Logistic Regression model on the training data.
Measures accuracy on test data.
3. Model Saving:
Serializes the trained model into a `.sav` file.

Parkinson's Disease Prediction Model

1. Preprocessing:
Loads `parkinsons.csv` and separates features and target (`status`).
Performs training/testing split.
2. Model Training:
Uses an SVM classifier for training.
Evaluates its performance with accuracy metrics.
3. Model Saving:
Stores the model using `pickle.dump`.

Would you like a detailed breakdown of any specific notebook or section? ​

Please answer

Here’s a detailed summary of your "Multiple Disease Prediction Model" project:

Project Overview

The project is a machine learning-based application that predicts the likelihood of three diseases:

1. Diabetes
2. Heart Disease
3. Parkinson's Disease

The application has a user-friendly interface built with Streamlit, where users input medical data to
receive predictions. Three separate ML models were trained for each disease using datasets and stored
as `.sav` files.

Key Components

1. app.py

This is the main application file that:

Loads the pre-trained models for each disease using the `pickle` library.
Provides a Streamlit-based user interface:

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 A sidebar menu for selecting the disease type.
Pages for user input and displaying predictions.
Handles user input and passes it to the respective model for prediction.

2. Diabetes Prediction Model (Notebook: diabetes.ipynb)

Dataset: `diabetes.csv`
Contains features like pregnancies, glucose level, blood pressure, BMI, etc., and a target
column (`Outcome`).
Algorithm: Support Vector Machine (SVM).
Workflow:
Dataset preprocessing: Splitting into features and labels, and creating training/testing sets.
Training the SVM classifier.
Model evaluation using `accuracy_score`.
Saving the model using `pickle.dump`.

3. Heart Disease Prediction Model (Notebook: heart.ipynb)

Dataset: `heart.csv`
Includes features like age, sex, chest pain type, blood pressure, cholesterol, etc., and a target
column (`target`).
Algorithm: Logistic Regression.
Workflow:
Preprocessing: Splitting features and labels, and creating training/testing sets.
Training the Logistic Regression model.
Testing the model for accuracy.
Saving the trained model.

4. Parkinson's Disease Prediction Model (Notebook: parkinsons.ipynb)

Dataset: `parkinsons.csv`
Features include voice-related attributes such as jitter, shimmer, HNR, etc., with `status` as
the target.
Algorithm: Support Vector Machine (SVM).
Workflow:
Data preprocessing: Separating features and labels, and creating train/test splits.
Model training with SVM.
Model evaluation.
Saving the model.

How It All Connects

1. Each model was trained and saved independently in the respective notebook.
2. `app.py` loads these saved models and uses them to make predictions based on user inputs.
3. The interactive interface ensures a seamless experience for testing predictions for all three
diseases.

Next Steps

If you're preparing for your interview:

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 1. Understand the logic behind SVM and Logistic Regression.
2. Be ready to explain why these algorithms were chosen for the respective tasks.
3. Practice running `app.py` to become familiar with its interface and functionality.
4. Prepare to discuss potential improvements, such as adding new models or features.

If you’d like a deeper explanation of any section, let me know!

Would you like a detailed breakdown of any specific notebook or section?

Yaa please describe any of the notebook.

Let’s break down the Diabetes Prediction Model Notebook (`diabetes.ipynb`) in detail:

1. Importing Libraries

The following libraries are used:

python

import numpy as np
import pandas as pd
from sklearn.model_selection import train_test_split
from sklearn import svm
from sklearn.metrics import accuracy_score

numpy and pandas: For data manipulation and analysis.

train_test_split: To divide the dataset into training and testing subsets.
svm: For training the Support Vector Machine model.
accuracy_score: To evaluate the model's performance.

2. Loading the Dataset

python

diabetes_dataset = pd.read_csv('/content/diabetes.csv')

The dataset is loaded as a DataFrame. It contains medical information like:

Pregnancies
Glucose
Blood Pressure
BMI
Diabetes Pedigree Function
Outcome (target: 1 for diabetic, 0 for non-diabetic).

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Example (first 5 rows):

Pregnancies Glucose BloodPressure SkinThickness Insulin BMI DiabetesPedigreeFunction A

6 148 72 35 0 33.6 0.627 5

3. Preprocessing

The dataset is split into features (X) and target labels (Y):

python

X = diabetes_dataset.drop(columns='Outcome', axis=1)
Y = diabetes_dataset['Outcome']

X: All columns except `Outcome`.

Y: The `Outcome` column.

Split into training and testing datasets:

python

X_train, X_test, Y_train, Y_test = train_test_split(X, Y, test_size=0.2, stratify=Y, random_

state=2)

test_size=0.2: 20% of the data is reserved for testing.

stratify=Y: Ensures the proportion of diabetic and non-diabetic cases remains consistent.

4. Model Training

An SVM classifier is trained on the dataset:

python

classifier = svm.SVC(kernel='linear')
classifier.fit(X_train, Y_train)

SVM (Support Vector Machine):

A supervised learning algorithm.
`kernel='linear'`: Uses a linear hyperplane for classification.
`fit()`: Trains the model using the training data.

5. Model Evaluation

The model is tested on both training and testing data:

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 python

X_train_prediction = classifier.predict(X_train)
training_data_accuracy = accuracy_score(X_train_prediction, Y_train)

X_test_prediction = classifier.predict(X_test)
test_data_accuracy = accuracy_score(X_test_prediction, Y_test)

Training Accuracy and Testing Accuracy are computed using `accuracy_score`.

Example Results:
Training Accuracy: ~78%
Testing Accuracy: ~76%

6. Model Saving

The trained model is saved using `pickle`:

python

import pickle
filename = 'diabetes_model.sav'
pickle.dump(classifier, open(filename, 'wb'))

Saves the trained SVM classifier to `diabetes_model.sav`.

This file is later used in `app.py`.

Key Considerations

Why SVM?
Effective for smaller datasets with clear margins of separation.
Handles high-dimensional spaces well.
Limitations:
Could explore other models (e.g., Random Forest) for potential performance improvement.

Would you like me to explain the other notebooks or dive deeper into SVM?

Move ahead to the next 2 ipynb files

Let’s break down the Heart Disease Prediction Model Notebook (`heart.ipynb`) and Parkinson's
Disease Prediction Model Notebook (`parkinsons.ipynb`) in detail:

Heart Disease Prediction Model Notebook (`heart.ipynb`)

1. Importing Libraries

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 python

import numpy as np
import pandas as pd
from sklearn.model_selection import train_test_split
from sklearn.linear_model import LogisticRegression
from sklearn.metrics import accuracy_score

LogisticRegression: The model used for prediction.

Other libraries are for data processing, splitting, and performance evaluation.

2. Loading the Dataset

python

heart_data = pd.read_csv('/content/heart.csv')

Dataset includes medical features like age, sex, chest pain types, resting blood pressure,
cholesterol, etc., with a `target` column (1: Heart Disease, 0: No Heart Disease).

Example (first 5 rows):

age sex cp trestbps chol fbs restecg thalach exang oldpeak slope ca thal
63 1 3 145 233 1 0 150 0 2.3 0 0 1

3. Preprocessing

Splitting features and labels:

python

X = heart_data.drop(columns='target', axis=1)
Y = heart_data['target']

Splitting into training and testing data:

python

X_train, X_test, Y_train, Y_test = train_test_split(X, Y, test_size=0.2, stratify=Y, random_

state=2)

4. Model Training

A Logistic Regression model is trained:

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 python

model = LogisticRegression()
model.fit(X_train, Y_train)

5. Model Evaluation

Evaluating the model:

python

X_train_prediction = model.predict(X_train)
training_data_accuracy = accuracy_score(Y_train, X_train_prediction)

X_test_prediction = model.predict(X_test)
test_data_accuracy = accuracy_score(Y_test, X_test_prediction)

Training Accuracy: ~85%

Testing Accuracy: ~83%

6. Model Saving

Saving the Logistic Regression model:

python

import pickle
filename = 'heart_disease_model.sav'
pickle.dump(model, open(filename, 'wb'))

The model is saved as `heart_disease_model.sav`.

Parkinson's Disease Prediction Model Notebook (`parkinsons.ipynb`)

1. Importing Libraries

python

import numpy as np
import pandas as pd
from sklearn.model_selection import train_test_split
from sklearn.svm import SVC
from sklearn.metrics import accuracy_score

SVC (Support Vector Classifier): The chosen algorithm.

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2. Loading the Dataset

python

parkinsons_data = pd.read_csv('/content/parkinsons.csv')

Dataset includes 22 features related to vocal parameters (e.g., jitter, shimmer, etc.) and a `status`
column (1: Parkinson’s, 0: Healthy).

Example (first 5 rows):

MDVP:Fo(Hz) MDVP:Fhi(Hz) MDVP:Flo(Hz) Jitter(%) Jitter(Abs) ... status

119.992 157.302 74.997 0.00784 0.00007 ... 1

3. Preprocessing

Splitting features and labels:

python

X = parkinsons_data.drop(columns=['name', 'status'], axis=1)

Y = parkinsons_data['status']

Splitting into training and testing data:

python

X_train, X_test, Y_train, Y_test = train_test_split(X, Y, test_size=0.2, stratify=Y, random_

state=2)

4. Model Training

Trains an SVM classifier:

python

model = SVC(kernel='linear')
model.fit(X_train, Y_train)

5. Model Evaluation

Evaluating the SVM model:

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 python

X_train_prediction = model.predict(X_train)
training_data_accuracy = accuracy_score(Y_train, X_train_prediction)

X_test_prediction = model.predict(X_test)
test_data_accuracy = accuracy_score(Y_test, X_test_prediction)

Training Accuracy: ~88%

Testing Accuracy: ~85%

6. Model Saving

The trained model is saved:

python

import pickle
filename = 'parkinsons_model.sav'
pickle.dump(model, open(filename, 'wb'))

The file is named `parkinsons_model.sav`.

Summary

Diabetes Model: Uses SVM for binary classification.

Heart Disease Model: Employs Logistic Regression for binary classification.
Parkinson's Model: Utilizes SVM with a linear kernel.

Each model is trained, evaluated, and saved for use in the Streamlit app (`app.py`). Let me know if you'd
like help integrating or enhancing this project!

Messages beyond this point are only visible to you

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