BIO 9700 Notes
BIO 9700 Notes
● Characteristics:
○ No nucleus; DNA is free in the cytoplasm (nucleoid region).
○ No membrane-bound organelles.
○ Small ribosomes (70S).
○ Cell wall made of peptidoglycan.
○ Examples: Bacteria and Archaea.
Eukaryotic Cells
● Characteristics:
○ DNA enclosed within a nucleus.
○ Contains membrane-bound organelles (e.g., mitochondria, chloroplasts).
○ Larger ribosomes (80S).
○ Cell walls present in plants (cellulose) and fungi (chitin).
○ Examples: Plant, animal, and fungal cells.
Mitochondria
● Structure: Double membrane; inner membrane folded into cristae; contains matrix.
● Function: Site of aerobic respiration; produces ATP.
● Structure: Double membrane; contains thylakoids stacked into grana; stroma surrounds
grana.
● Function: Site of photosynthesis; converts light energy into chemical energy.
Ribosomes
● Structure: Small (70S in prokaryotes, 80S in eukaryotes); made of RNA and proteins.
● Function: Site of protein synthesis.
● Rough ER:
○ Studded with ribosomes.
○ Synthesizes and transports proteins.
● Smooth ER:
○ Lacks ribosomes.
○ Synthesizes lipids and detoxifies chemicals.
Golgi Apparatus
Lysosomes
Vacuoles
Cell Membrane
Animal Cells
● Light Microscope:
Magnification Formula
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7. Key Definitions
● Organelle: A specialized structure within a cell that performs a specific function.
● Cytoplasm: Jelly-like substance where chemical reactions occur.
● Nucleoid: Region in prokaryotes containing circular DNA.
● Plasmid: Small circular DNA in prokaryotes.
Study Tips
2. Water
● Structure:
○ Polar molecule with hydrogen bonding.
○ High specific heat capacity and latent heat of vaporization.
● Functions:
○ Solvent for biochemical reactions.
○ Medium for transport (e.g., blood, xylem).
○ Temperature regulation.
3. Carbohydrates
Monosaccharides
Disaccharides
Polysaccharides
● Examples: Starch, glycogen, cellulose.
● Functions:
○ Starch: Energy storage in plants.
○ Glycogen: Energy storage in animals.
○ Cellulose: Structural support in plant cell walls.
4. Lipids
● Structure:
○ Made of glycerol and fatty acids.
○ Triglycerides: One glycerol + three fatty acids.
○ Phospholipids: One glycerol, two fatty acids, and a phosphate group.
● Functions:
○ Energy storage.
○ Insulation and protection.
○ Structural component of cell membranes (phospholipid bilayer).
5. Proteins
Structure:
Functions:
6. Enzymes
● Structure:
○ Globular proteins with an active site.
○ Specific to substrates (lock-and-key model).
● Factors Affecting Activity:
○ Temperature, pH, substrate concentration, enzyme concentration.
● Inhibition:
○ Competitive: Inhibitor competes with substrate for the active site.
○ Non-competitive: Inhibitor binds elsewhere, altering active site shape.
7. Nucleic Acids
DNA (Deoxyribonucleic Acid)
● Structure:
○ Double helix; two strands held by hydrogen bonds between complementary
bases (A-T, C-G).
○ Sugar-phosphate backbone.
● Function: Stores genetic information.
● Structure:
○ Single-stranded; bases include A, U, C, G.
● Function: Transfers genetic information; involved in protein synthesis (mRNA, tRNA,
rRNA).
Proteins
● Biuret Test: Add sodium hydroxide and copper sulfate (purple color).
9. Key Definitions
● Monomer: Single unit that forms polymers (e.g., glucose).
● Polymer: Large molecule made of repeating units (e.g., starch).
● Condensation Reaction: Forms bonds with the removal of water.
● Hydrolysis Reaction: Breaks bonds with the addition of water.
Study Tips
2. Structure of Enzymes
● Active Site: The region of the enzyme where the substrate binds.
● Enzyme-Substrate Complex: Temporary complex formed when the substrate binds to
the active site.
● Lock-and-Key Model: Substrate fits exactly into the active site like a key in a lock.
● Induced Fit Model: Active site changes shape slightly to accommodate the substrate.
3. Properties of Enzymes
● Reusable: Not consumed in the reaction.
● Specific: Act on one type of substrate.
● Affected by Conditions: Temperature, pH, and substrate concentration.
● Saturation: At high substrate concentrations, all active sites are occupied.
2. pH
● Effect: Enzymes have an optimum pH at which they function best.
● Denaturation: Extreme pH levels disrupt bonds, altering the enzyme's shape.
3. Substrate Concentration
● Effect: Increases rate of reaction until all active sites are occupied (saturation point).
4. Enzyme Concentration
5. Enzyme Inhibition
1. Competitive Inhibition
● Mechanism: Inhibitor competes with the substrate for the active site.
● Effect: Reduces reaction rate but can be overcome by increasing substrate
concentration.
2. Non-Competitive Inhibition
6. Enzyme Cofactors
● Definition: Non-protein molecules that assist enzyme activity.
● Types:
○ Prosthetic Groups: Permanently bound to the enzyme (e.g., heme in catalase).
○ Coenzymes: Organic molecules that temporarily bind (e.g., NAD, FAD).
○ Inorganic Cofactors: Metal ions (e.g., Mg²⁺, Zn²⁺).
7. Examples of Enzymes
● Amylase: Breaks down starch into maltose.
● Lipase: Breaks down lipids into glycerol and fatty acids.
● Protease: Breaks down proteins into amino acids.
● Catalase: Breaks down hydrogen peroxide into water and oxygen.
9. Enzyme Kinetics
Michaelis-Menten Curve
● Vmax: Maximum rate of reaction when all active sites are saturated.
● Km (Michaelis constant): Substrate concentration at half Vmax; indicates enzyme
affinity for substrate.
Study Tips
● Components:
○ Phospholipid Bilayer:
■ Hydrophilic (water-attracting) heads face outward.
■ Hydrophobic (water-repelling) tails face inward.
○ Proteins:
■ Intrinsic (integral): Span the bilayer (e.g., carrier and channel proteins).
■ Extrinsic (peripheral): Found on the surface.
○ Cholesterol: Provides stability and fluidity.
○ Glycoproteins and Glycolipids: Involved in cell recognition and signaling.
● Properties:
2. Active Transport
3. Bulk Transport
● Endocytosis:
○ Process of taking in substances via vesicle formation.
○ Types:
■ Phagocytosis: Uptake of solid particles.
■ Pinocytosis: Uptake of liquids.
● Exocytosis:
○ Process of expelling substances via vesicle fusion with the membrane.
4. Water Potential
● Definition: Measure of the potential energy of water molecules.
● Key Points:
○ Pure water has the highest water potential (0 kPa).
○ Adding solutes lowers water potential (negative value).
○ Water moves from a region of higher (less negative) water potential to lower
(more negative) water potential.
● Hypotonic Solution: Water enters; cell swells and may burst (lysis).
● Hypertonic Solution: Water exits; cell shrinks (crenation).
● Isotonic Solution: No net movement; cell remains the same.
Plant Cells
7. Practical Investigations
● Osmosis:
○ Use potato cylinders in solutions of varying concentrations to observe changes in
mass.
● Diffusion:
○ Use agar blocks with pH indicators to observe diffusion of acids or bases.
● Permeability:
○ Use beetroot cells to measure pigment leakage under different conditions (e.g.,
temperature, solvents).
8. Key Definitions
● Diffusion: Movement of molecules from high to low concentration.
● Osmosis: Diffusion of water across a semi-permeable membrane.
● Active Transport: Movement of substances against the concentration gradient using
energy.
● Water Potential: Potential energy of water in a system.
Study Tips
2. Interphase
● Longest phase of the cell cycle.
● Stages:
○ G1 Phase (Gap 1):
■ Cell grows and synthesizes proteins.
■ Organelles are replicated.
○ S Phase (Synthesis):
■ DNA replication occurs.
■ Each chromosome forms two identical sister chromatids.
○ G2 Phase (Gap 2):
■ Cell prepares for mitosis by synthesizing more proteins and organelles.
3. Mitosis
Purpose
Stages of Mitosis
1. Prophase:
○ Chromosomes condense and become visible.
○ Nuclear envelope breaks down.
○ Spindle fibers form from centrioles.
2. Metaphase:
4. Cytokinesis
● Division of the cytoplasm to form two separate daughter cells.
● Animal Cells: Cleavage furrow forms and pinches the cell in two.
● Plant Cells: Cell plate forms, leading to the formation of a new cell wall.
8. Key Definitions
● Chromatid: One of two identical halves of a replicated chromosome.
● Centromere: Region where two chromatids are joined.
● Spindle Fibers: Microtubules that help separate chromatids.
● Cleavage Furrow: Indentation that begins the process of cytokinesis in animal cells.
● Cell Plate: Structure that forms during cytokinesis in plant cells.
Study Tips
2. Structure of DNA
● Components:
○ Nucleotide: Basic unit consisting of:
■ A phosphate group.
■ A deoxyribose sugar.
■ A nitrogenous base (Adenine, Thymine, Cytosine, Guanine).
○ Double Helix: Two strands coiled around each other.
○ Base Pairing:
■ Adenine (A) pairs with Thymine (T).
■ Cytosine (C) pairs with Guanine (G).
■ Held together by hydrogen bonds.
3. Structure of RNA
● Components:
○ Single-stranded molecule.
○ Ribose sugar instead of deoxyribose.
○ Uracil (U) replaces Thymine (T).
● Types:
○ mRNA (Messenger RNA): Carries genetic code from DNA to ribosomes.
○ tRNA (Transfer RNA): Brings amino acids to ribosomes.
○ rRNA (Ribosomal RNA): Forms part of the ribosome.
4. DNA Replication
● Definition: Process of copying DNA before cell division.
● Steps:
1. Unwinding: DNA helicase unwinds the double helix.
2. Complementary Base Pairing: Free nucleotides pair with exposed bases.
3. Joining: DNA polymerase forms new strands by joining nucleotides.
● Result: Two identical DNA molecules, each with one original and one new strand
(semi-conservative replication).
5. Protein Synthesis
Stages
1. Transcription:
6. Genetic Code
● Features:
○ Triplet code: Three bases (codon) code for one amino acid.
○ Universal: Same in all organisms.
○ Degenerate: Multiple codons can code for the same amino acid.
● Start and Stop Codons:
○ Start codon: AUG (Methionine).
○ Stop codons: UAA, UAG, UGA.
7. Mutations
● Definition: Changes in the DNA sequence.
● Types:
○ Substitution: One base is replaced by another.
○ Insertion/Deletion: Addition or removal of a base, causing a frameshift.
● Effects:
○ Silent: No effect on the protein.
○ Missense: Changes one amino acid.
○ Nonsense: Introduces a stop codon, truncating the protein.
8. Practical Investigations
● DNA Extraction:
○ Use simple materials (e.g., from fruit) to extract DNA.
● Protein Synthesis Models:
○ Use models or diagrams to simulate transcription and translation.
Key Definitions
● Gene: A segment of DNA that codes for a protein.
● Codon: A sequence of three bases on mRNA that codes for an amino acid.
● Anticodon: A sequence of three bases on tRNA complementary to a codon.
● Polypeptide: A chain of amino acids linked by peptide bonds.
Study Tips
2. Water Transport
Water Uptake by Roots
● Cohesion-Tension Theory:
○ Water molecules stick together (cohesion).
○ Adhesion helps water stick to xylem walls.
○ Transpiration creates tension, pulling water upwards.
● Root Pressure:
○ Osmotic pressure in roots pushes water upwards.
3. Transpiration
● Definition: Loss of water vapor from leaves through stomata.
● Process:
○ Water evaporates from mesophyll cells into air spaces.
○ Diffuses out through stomata.
● Factors Affecting Transpiration:
○ Light intensity.
○ Temperature.
○ Humidity.
○ Wind speed.
● Adaptations to Reduce Water Loss:
○ Waxy cuticle.
○ Stomata closure.
○ Reduced leaf surface area.
5. Phloem Transport
Translocation
Key Definitions
Study Tips
2. The Heart
● Structure:
○ Four chambers: two atria (upper), two ventricles (lower).
○ Valves prevent backflow: bicuspid, tricuspid, semilunar.
○ Blood vessels: vena cava, pulmonary artery, pulmonary vein, aorta.
● Cardiac Cycle:
○ Atrial systole: Atria contract, blood flows to ventricles.
○ Ventricular systole: Ventricles contract, blood flows to arteries.
○ Diastole: Heart relaxes, chambers fill with blood.
● Control of Heartbeat:
○ SAN (pacemaker) initiates heartbeat.
○ Impulses pass through AVN, Bundle of His, and Purkinje fibers.
3. Blood Vessels
● Arteries:
○ Carry blood away from the heart.
○ Thick walls, narrow lumen, high pressure.
● Veins:
○ Carry blood to the heart.
○ Thin walls, wide lumen, valves prevent backflow.
● Capillaries:
○ One cell thick for exchange of substances.
4. Blood Composition
● Plasma: Transports nutrients, hormones, waste.
● Red Blood Cells:
○ Contain hemoglobin for oxygen transport.
○ Biconcave shape, no nucleus.
● White Blood Cells:
○ Immune response.
● Platelets:
○ Blood clotting.
5. Oxygen Transport
● Hemoglobin binds oxygen to form oxyhemoglobin.
● Releases oxygen in tissues where needed (low oxygen partial pressure).
● Bohr Effect: High CO2 reduces hemoglobin's oxygen affinity.
Key Terms
Study Tips
● Label diagrams of the heart and blood vessels.
● Memorize blood flow through the heart.
● Understand the cardiac cycle and oxygen transport.
● Practice past paper questions.
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Ventilation
● Inhalation:
○ Diaphragm contracts and flattens.
○ External intercostal muscles contract, lifting the ribcage.
○ Thoracic volume increases, pressure decreases, air enters.
● Exhalation:
○ Diaphragm relaxes and domes.
○ External intercostal muscles relax, ribcage moves down.
○ Thoracic volume decreases, pressure increases, air exits.
3. Gas Exchange in Alveoli
● Oxygen Diffusion:
○ O2 diffuses from alveoli into blood (high to low concentration).
○ Binds to hemoglobin in red blood cells.
● Carbon Dioxide Diffusion:
○ CO2 diffuses from blood into alveoli (high to low concentration).
○ Removed during exhalation.
4. Adaptations of Alveoli
● Large surface area for diffusion.
● Thin walls (short diffusion distance).
● Rich blood supply to maintain concentration gradient.
● Moist lining to dissolve gases.
● Countercurrent Flow:
○ Blood and water flow in opposite directions, maintaining a steep O2 gradient.
● Gill Structure:
○ Gill filaments and lamellae increase surface area.
Key Terms
Study Tips
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3. Immune Response
● Primary Defense:
○ Skin, mucus, cilia, stomach acid.
● Secondary Defense:
○ White blood cells (phagocytes, lymphocytes).
○ Antibodies target specific antigens.
4. Antibiotics
● Effective against bacteria, not viruses.
● Overuse/misuse can lead to antibiotic resistance.
Key Terms
Study Tips
2. Active Immunity
● Natural Active Immunity: Gained after infection; memory cells produced.
● Artificial Active Immunity: Gained through vaccination; stimulates immune response
without causing disease.
3. Passive Immunity
● Natural Passive Immunity: Antibodies passed from mother to baby via placenta or
breast milk.
● Artificial Passive Immunity: Antibodies injected for immediate protection (e.g.,
antitoxins).
4. Immune Response
● Primary Response: Slow; body produces specific antibodies and memory cells.
● Secondary Response: Faster and stronger due to memory cells.
5. Vaccination
● Vaccines contain weakened or dead pathogens.
● Stimulate the production of memory cells for long-term immunity.
6. Key Terms
● Antigen: Molecule on pathogen surface triggering immune response.
● Antibody: Protein targeting specific antigens.
● Memory Cells: Long-lived cells enabling faster secondary response.
Study Tips