UNIT 1 _ Microbiota of the Human Body and Introduction to (1)
UNIT 1 _ Microbiota of the Human Body and Introduction to (1)
TYPES
Transmission of Usually non pathogenic + not associated with Pathogenic + usually associated with transmission
infection transmission of infection ( sometimes of infection
opportunistic pathogen )+ bacterial interference
Immune response Tolerated by the host immune system May trigger immune response if recognized as
foreign
Microbiota of skin
1. skin
- Physical & immunologic barrier
- Large no. of microbes colonize here (most of which are harmless or even beneficial to the host)
- Because of its constant exposure to and contact with the environment, the skin is particularly apt to contain transient
microorganisms. ( can’t be removed )
- there is a constant and well-defined resident flora, modified in different anatomic areas
- Extent of skin microflora depend on individuals personal hygiene, clothing, work, environment
2. Factors discouraging microbial colonization on skin-
- Dryness
- inhibit growth
- Some region lie toes, armpit have high no. of microflora as compared to dry area- 10^6 Cfu/m^2
- Low PH (3-5) - acid production
- Antimicrobial compound
- Lysosome- produced by sweat gland
- secretion of sebum/complex lipids - by sebaceous gland - which can be degraded by certain bacteria(
propionibacterium acnes ) to produce long chain fatty acid- toxic to other bacteria
- salts
3. Pathogen- infection- transmission
- Injury
- Needle
- Mosquito bite
4. mechanism for this selectivity-
- Despite being constantly exposed to large no. of microbes- skin can distinguish between harmless and harmful
pathogenic microbe
- Keratinocytes
(continuously sample the microbiota colonizing the skin surface through pattern recognition receptors (eg, Toll-like
receptors, mannose receptors)
- activation of keratinocyte PRR (pattern recognition receptor)→by PAMP (pathogen-associated molecular
patterns)-->PAMP initiates the innate immune response→ resulting in the secretion of antimicrobial peptides, cytokines,
and chemokines.
5. Microflora
- Staphylococcus epidermidis
- Staphylococcus aureus
- Propionibacterium acnes ( aerobic and anaerobic diphtheroid bacilli )
- streptococcus viridans ( α-hemolytic )
- Enterococcus species
- Acinetobacter
- candida
2. facts
- sterile at birth, but colonization begins soon after with introduction of organisms through food and environmental
exposure
- Microbial populations vary across gastrointestinal sections, influenced by factors like pH and oxygen availability.
- Antibiotic use or medical conditions altering stomach pH can significantly impact microbial flora.
- Imbalance in gut microbiota associated with inflammatory bowel diseases and possibly intestinal malignancies.
3. Mouth
- Favorable condition- humid, exposed envt, nutrients availability ( saliva )- lipid, AA, water, etc
- Microflora-
- streptococcus salivarius ( uniformly present in large no on dorsal surface of tongue )
- strepto, staph, lactobacillus, nisseria, candida
- Change in flora
- Teeth aane se pahele- aerobic condition- aerobic/ facultative aerobes
- Teeth aane ke baad- anaerobic condition ( in between the teeth)- obligate anaerobes
- At puberty-
- Treponema
- bacteroides, melaninogenicus ( colonize b/w teeth & gum )- anaerobic cond.
- Trichomonas tenax (protozoa)- in gingival margins & teeth cavity
5. Small intestine-
- Duodenum-10^3-10^6 bact/g
- Jejunum- 10^5-10^8 bact/g
- Ileum- 10^5-10^8 bact/g
6. Large intestine- colon- 10^11 bact/g
7. Microbes are removed-
- Peristalsis
- Mucous
- Desquamation
8. Microbe-
- E.coli, kleb, candida albicans
- Lactobacilli
- Bifidobacterium
- Trichomonas hominis, iodamoeba, entamoeba
Koch’s postulates
1. The microorganism should be found in all cases of the disease in question, and its distribution in the body should be in accordance with the
lesions observed.
2. The microorganism should be grown in pure culture in vitro (or outside the body of the host) for several generations.
3. When such a pure culture is inoculated into susceptible animal species, the typical disease must result.
4. The microorganism must again be isolated from the lesions of such experimentally produced disease.
D=nV/R DOSE
Virulence mechanism
2 possible mechanism-
Many factors determine bacterial virulence or the ability to cause infection and disease.
1. Defensive strategy ( vo strategy jo bacterial cell ko immune system se bachata hai )
a. Capsule→ bacteria produce outer layer of polysaccharides or proteins
- a protective barrier around the cell.
- Also help in adhesion
- enhance bacterial survival by preventing phagocytosis, as they inhibit recognition and engulfment by host immune cells.
- Ex- anthrax, yersinia pestis
b. Biofilm formation
- bacteria adhering to surfaces and producing an extracellular matrix, resulting in the formation of complex microbial
communities.
- provide protection against host immune responses and antimicrobial agents, facilitating bacterial persistence and colonization
of host tissues.
c. Antigenic variation
- refers to the ability of bacteria to alter surface antigens, such as proteins or polysaccharides, to evade host immune
recognition.
- Ex- influenza, african sleeping sickness ( treponema bruce )
d. Adhesins (Adherence factor)
- When bacteria enter the body of the host, they must adhere to cells of a tissue surface. If they did not adhere, they would be
swept away by mucus and other fluids
- Bacteria also have specific surface molecules that interact with host cells- pili, fimbriae
- Ex- spikes, hooks, suction disc ( in giardia )
e. Miscellaneous protein
- M protein in streptococcus
- Waxy coat in tuberculosis
- Toxin classification
- Based on activity
(i) enterotoxin
- Travelers diarrhea- E.coli
- Cholera
- Clostridial food poisoning
(ii) neurotoxin
- Interfere with transmission of nerve impulse
- Botulism
- Tetanus
- Outcome→ paralysis (2 types- flacid & spastic )
(iii) cytotoxin
- Toxic shock syndrome
- E.coli 0157 ( deadly strain )
b. Tissue invasion
- Tissue invasion–the ability of bacteria to penetrate and enter host tissues–facilitated by adherence to host cells and subsequent
cellular uptake.
- By invading host tissues, bacteria can establish infection at specific sites, evade immune surveillance, and initiate pathogenic
processes leading to disease.
c. Enzymatic degradation
Many species of bacteria produce enzymes that are not toxic but do play important roles in the infectious process
- Tissue degrading
- Allow spread of infection ( spreading factors )
(i) hyaluronidase- act on hyaluronic acid ( part of connective tissue )
(ii) collagenase - act on collagenase ( framework of connective tissue )
(iii) haemolysin- act on RBC
(iv) leukocidins- act on WBC
(v) kinases - breakdown/ remove clots→ allowing trapped bacteria to cause infection
Ex- staphylokinase, DNAse ( DNAse dna ko cleave karega- viscosity kam pus ki
Helicobacter pylori- produce urease
Ex- streptokinase- Streptokinase has been used in treatment of acute myocardial infarction to dissolve fibrin clots.
Transmission of infection
1. It is the passing of infection- causing communicable disease from the infected host individual to the healthy person.
2. Transmission-
- Bacteria exhibit adaptability to diverse environments ensuring their survival and enhancing transmission.
- Some bacteria employ strategies such as causing asymptomatic or mild infections within hosts, rather than fatal outcomes, to increase
the likelihood of transmission.
- Example-
Clostridium in the environment, transmitted through ingestion or wounds, aided by spore formation for survival.
- Clinical Manifestations and Transmission
- Vibrio cholerae induces diarrhea, contaminating water sources or seafood, facilitating transmission through ingestion.
- Mycobacterium tuberculosis spreads primarily through respiratory droplets expelled during coughing, emphasizing
person-to-person transmission.
- Many bacteria responsible for nosocomial infections are transmitted via hands, underlining the importance of hand hygiene in
infection control.
3. infection-
- Bacteria initiate disease by attaching to host cells
- multiply
- spread directly through tissues or via the lymphatic system into the bloodstream (bacteremia)
- Example-
Vibrio cholerae ingested→attracted to gut epithelium→ adheres to the mucosal surface→Production of cholera toxin disrupts
electrolyte balance→inducing watery diarrhea
LPS of gram -ve bact - are bact cell wall component- often liberated when bacterial cell lyse.
- Heat stable
- Mol wt b/w 3000-5000D
- There are 3 main components-
1) Lipid A- recognized by immune system- responsible for cytokine stimulation
2) Oligosaccharide core
3) Outermost O ag polysaccharide
Endotoxin- Mainly these are LPS→in blood→ detected by Macrophage, monocytes, etc→ reaction/ effects ( listed below )
1. Can bind to TLR→ innate immunity active ( PRR-PAMP )
2. Antigen directly activating complement pathway ( alternative pathway )--> membrane + tissue damage→ MAC formation→ lysis + inflammation
3. Activate immune system
4. Detection by macrophage or monocyte→ secretion of IL & TNF→ inflammation
5. Activate factor 12→
- Activate plasminogen- make plasmin- plasmin breakdown fibrin→ fibrin split product→ decrease in platelet & fibrinogen level
- Activate coagulation cascade→ fibrinogen converted to fibrin→fibrin production→ fibrin clots formed
6. Symptoms like Fever + leukopenia + hypotension + Shock
- Hypoglycemia ( endotoxin leads to high sugar consumption by cell- low sugar in blood - hypoglycemia )
- All these Result in impaired perfusion of organs ( proper o2 & nutrients nhi pahuchta organ tak )--> Result in DIC ( disseminated
intravascular coagulation )--> organ failure→ death
7. Cause- platelets adherence to endothelial→ occlusion of small blood vessel→ causing Ischemic or haemolytic necrosis→ blood is not able to
reach organ properly→ organ failure→ death
8. Bacteremia- presence of bacteria in blood
Result→
- Leukopenia + fever + hypoglycemia
- Maybe widespread atreolar & venulor constriction→ vascular dilation + increased vascular permeability + decrease in venous return→
lower cardiac output→ peripheral vascconstriction
Endotoxin in general are not that toxic but when in large quantity→ highly toxic
secretion Component of outer membrane of gram -ve organism Excreted out of living cell
( retained inside the cell- released when cell lyse )
Specific receptors not found on cells ( PRR-PAMP Usually bind to specific receptors on cells
interaction) ( innate immunity in action wohoo!! )
receptor Effects - due to - binding to TLR, IL, complement Usually have specific receptor on cell
Jarisch-Herxheimer Reaction
- two dermatologists who independently described it: Adolf Jarisch and Karl Herxheimer
- reaction that can occur shortly after initiating antibiotic treatment for certain infections
- reaction typically manifests within hours of antibiotic administration and is characterized by fever, chills, headache, myalgias, exacerbation of
skin lesions, and sometimes hypotension.
- result from the release of endotoxins or other microbial components following rapid killing ( cell lysis ) of bacteria by antibiotics, triggering an
exaggerated immune response.
UNIT 2 : Human diseases caused by bacterial pathogens
Bacillus anthracis
1. Properties
- Aerobic
- Spore forming ( centrally located spores- endospore )
- Non motile
- Rods ( with square end )
- Blood agar- medusa head colony ( round ) + non hemolytic
2. Pathogenesis
- Anthrax
- Affect both humans & animals ( usually herbivore- goat, sheep, horse, etc )- mainly gazing animal
- Entrance- mouth / soil spore
In humans-
( when comes in contact with infected person/animal or contaminated animal product )
a. Cutaneous anthrax
b. Pulmonary anthrax
c. Intestinal anthrax
3. Virulence factor
- Majorly capsules- polysaccharide
- Toxin
- Component of toxin= edema factor + lethal factor + protective factor
4. Vaccine available
5. Transmission -
- Spore→ mouth→vegetative form→ edema→ lymphatic & blood stream → germinate & multiply in blood → death
6. Virulence of anthracis
a. Capsule
- Mostly polysaccharide but for bacillus anthracis → poly D-glutamic acid ( anti phagocytic )
- Capsule encoded by plasmid pX02
- Spores phagocytize ho jate hai but cell nhi.
( so spores phagocytize hue lungs mein→ lymph node mein aaye→ germinate→ cell formed→ can not be
phagocytized easily )
b. toxin
- A2B type toxin ( tripartite )
(i) protective - allows binding of toxin to surface
(ii) edema factor- cAMP production increase krta hai- increase in fluid secretion from cell
(iii) lethal factor- to kill host cell - hemorrhage or necrosis mechanism
# genes for these toxins encoded by plasmid pX011
Cutaneous anthrax
1. Anthrax of skin
2. Entry- skin ( face, neck, hand, arms, back, etc
3. Mechanism
- Formation of bumps called papules- pruritic papule ( fluid filled vesicle- itching ) - within 1-7 days after entry of spores
( papule resembles like insect bite )
- Papule changes into vesicle ( fluid secretion starts )
( sometimes small vesicles fuse → necrotic ulcer/ black ulcer )--> black eschar
- Eschar dries and separates from the skin ( sukh ke jhad jate hai )
( but scar remains )- many weeks - to heal this scar
# in 20% patients- it may lead to→ systemic infection or meningitis and death
4. Can also cause
- Lymphangitis and lymphadenopathy } swelling of lymph nodes/ increase in size
5. Least dangerous
Pulmonary anthrax
1. Fatal- deadliest form of anthrax
2. mechanism
- Dust from infected wool ( during wool sorting→ dust → spores→ spores phagocytized in lungs by macrophage→
transported to lymphatic drainage & lymph node ( mediastinal node )- chest area→
- germinate in lymph node→ toxin production
- RESULT-
- Hemorrhagic media stinitis
- Sepsis
- Hemorrhagic meningitis (brain)
- Hemorrhagic pneumonia
3. Early manifestation
- Hemorrhagic necrosis
- Edema of media stinal
- Sub sternum pain ( sternum bone ke niche )
- On x ray→ media stinal widening visible
Lungs enclosed within pleura →hemorrhagic pleural effusion ( inner and outer pleura ke beech fluid )--> X ray
RESULT- coughing + sepsis
- bact enter into blood stream now
- Can reach GI tract
4.
Intestinal anthrax
1. Symptoms- enteritis + bloody diarrhea + abdominal pain+ vomiting
Streptococcus pyogenes
1. Properties -
- Gram +ve
- Non motile
- Non spore forming
- Produce extracellular molecules
- aerobic/ facultative anaerobe
- 37 degree optimum
- Hemolytic bacteria
Can be identified by hemolysis on blood agar
(i) alpha hemolytic type- streptococcus viridans
(ii) beta- S. agalactiae- STREPTOCOCCUS PYOGENES
(iii) gamma- S. pneumoniae ( no hemolysis )
# hemolysis promoted in a 10% CO2 environment.
- Different strains-
- Virulence strain- matte colonies
- Non-virulent strain- glossy colony
2. Classification
- Based on colony morphology, hemolytic reaction, serological basis, biochemical feature.
- Based on capsule polysaccharide S.pneumoniae- classified into 90 antigenic type
LANCEFIELD CLASSIFICATION
- Based on cell wall carbohydrate composition
- 20 groups- [A-H] & [K-U]
- GroupA- rhamnose N acetyl glucosamine
- Group B- rhamnose glucosamine polysaccharide
- Group D- glycerol teichoic acid
3. Antigenic structure
a. Have M protein
- Play role in virulence
- Inhibit phagocytosis
- Appearance- hair like projection of cell wall
- Rod like coiled structure that separate functional domain
- Heat and acid stable
- Many immuno- antigenic determinant sites→ bohot sare M protein ban sakte hai→ reoccured infection
b. Enzyme
(i) streptokinase
- Convert plasminogen to plasmin→ it will digest fibrin and other protein
- Used to treat blood clots
- Anti streptokinase ab → in diagnostics→ to detect this infection
(ii) streptodornase
- DNAse ( pus ki viscosity kam )
- Combination of streptokinase & streptodornase used sometimes
(iii) hyaluronidase
- Also known as pedic factor
- Spreading factor
- Hyaluronic acid in tissue ( helps in joining/ adherence of cells ) degraded by this enzyme
(iv)NADase
- Works as leukosidase- kills leukocyte
(v) hemolysin
- 2 types of hemolysins produced
Streptolysin O Streptolysin S
Anti streptolysin O Ab used for standard Can’t be used for diagnosis→ antigenic nhi hai→ ab
serological process for retro specific diagnosis nhi banegi
Range - 160-200→ abnormally high–. Suggest
recent infection
c. Toxin
- Pyrogenic toxin ( pyrogenic- fever )
- Erythrogenic toxin
- Acts as superantigen
- 3 types- A, B & C
- Produced by group A streptococci when they have lysogenic bacteriophage→ associated with disease
- Streptococcal toxic shock syndrome
- Scarlet fever
- May cause skin infection
- Generally have M protein type I &II
4.