Lab 12 Human Genetics
Lab 12 Human Genetics
including blue) for easier grading. Points will be deducted if you do not
distinguish your answers.
Vocabulary:
Genotype
Phenotype
Autosomal dominant
Autosomal recessive
Heterozygous
Homozygous
Probability
X-linked recessive
X-linked dominant
Multiple alleles
Codominance
Karyotype
Pedigree
Introduction:
Just like in pea plants, Mendel’s laws of inheritance also apply to humans.
Humans inherit 46 chromosomes that occur in 23 pairs, 22 pairs of autosomes and
one pair of sex chromosomes (either XX or XY). This means that all autosomal
genes exist in two forms, called alleles. These alleles may be genetically identical,
called homozygous (AA or aa) or they may be genetically different (Aa or aA). The
fact that one allele may be dominant over the other determines what phenotype is
exhibited. Dominant alleles are represented by capital letters (A) and recessive
are represented by lower case (a). Thus, you can have homozygous dominant
(AA) or homozygous recessive (aa) and of course heterozygous (Aa).
When a gene follows Mendel’s laws of inheritance (MOST genes do not), it is
easy to predict the ratios of potential offspring using Punnett squares, or for
example to determine the genotypes of parents from the genotype or phenotype of
the offspring. In this section of the lab, we will practice determining the genotype
given information about the gene and inheritance of it.
Figure 1: Left – Widow's peak (dominant) versus Right– straight hairline (recessive).
Figure 2: Left – No Hitchhiker’s thumb (dominant) versus Right– Hitchhiker’s thumb (recessive).
Figure 3: Right – attached earlobes (recessive) versus Left– unattached earlobes (dominant).
Figure 4: Left– freckles (dominant) versus Right– no freckles (recessive).
Questions:
1. What is the homozygous recessive genotype for dimples? What is the
phenotype?
The dd without any dimples
4. Two people who are heterozygous for earlobes unattached have a child.
List the genotypes possible for their children regarding earlobe
attachment. Show your work. UU, Uu, uu
U u
U UU Uu
u Uu uu
5. Ryann does not have freckles, but both their parent’s do. Deduce the genotype
of their parents. What is Ryann’s genotype?
The parents Ff, Ryan ff,
6. Godric is heterozygous for widow’s peak and has no hair on the back of his hand.
His partner has a straight hairline and is heterozygous for hair on the back of
their hand.
a. What is Godric’s genotype? Ww, hh
b. What is his partner’s genotype? Ww, Hh
c. What possible genotypes will their children have for hair lines? Ww, ww
d. What possible genotypes will their children have for hair on the back of
the hand? Hh, hh
Part 2: A Taste of Genetics – Life Example with Taste
Every organism on Earth has a different way to perceive the world due
to their individual life experiences as well as their genetic make-up. Humans
are no different; every individual has their own experiences that shapes their
world perception but so too does their DNA. You may be surprised to learn
that 99.9% of the human genome is identical from one individual to the next,
and it is the 0.1% difference that makes each individual unique.
Some of these differences can affect our sensory systems and how we
perceive the natural world. For example, over time we have learned which
things taste good and are good for us while simultaneously learning which
things taste bad or are bad for us. Specifically, bitter compounds are closely
associated to toxic substances in nature. The way we know things taste
bitter, or any other flavor for that matter, is because we have special
chemical receptors in our mouth and nose that bind molecules in our food
and send signals to the brain telling it what the food tastes like.
The ability to taste PTC comes from the gene TAS2R38 which encodes
one of the chemical receptors in our mouth that binds to PTC. By comparing
PTC tasters to non-tasters, scientists have found three single nucleotide
polymorphisms (SNPs) that differentiate the taster allele (T) from the non-
taste allele (t). A SNP is a genetic mutation where one nucleotide in DNA is
different from one individual to the next. The word mutation sounds scary,
but a mutation is not always bad; there are nearly 10 million SNPs in humans
which means SNPs are common. The three SNPs (see table 1) found in
the TAS2R38 gene leads to changes in the amino acid sequence which can
potentially change the proteins’ function.
In this section of the lab, you will use a set of data that was collected
from a previous class. This data has not yet been analyzed, therefore you will
have to sort through it and determine what conclusions, if any, can be made.
To collect this data, 35 participants were asked to place a strip of PTC
paper (paper coated with phenylthiocabamide) on their tongue. As soon as they
detected a taste, they were instructed to remove the paper and report what the
taste was, or if they never detected any taste. Those who reported that it was
extremely bitter, “to the point of almost not being able to take it” as several
commented, were also recorded. It is normal that some individuals who are tasters
are also much more sensitive to PTC and thus sense the bitterness much more
strongly than normal tasters. We call these individuals “Super tasters”.
Data:
Table 3: Results from one class (35 different individuals) who
conducted a PTC taste test.
Participa No Tasted Extremely Bitter (Super
nt Taste Bitter Taster)
1 x
2 x
3 x
4 x x
5 x
6 x x
7 x
8 x
9 x x
10 x
11 x
12 x x
13 x
14 x
15 x
16 x x
17 x
18 x
19 x
20 x
21 x
22 x
23 x
24 x x
25 x
26 x
27 x
28 x
29 x
30 x x
31 x
32 x
33 x x
34 x
35 x
Questions:
7. What is the total number of non-tasters in the class?
9
8. What is the percent of the class that are non-tasters of PTC?
25%
9. What is the genotype on non-tasters?
Tt
10. What is the total number of tasters in the class?
26
11. What is the percent of the class that are tasters of PTC?
74%
12. What is the genotype(s) of tasters?
TT, Tt
13. Given that some tasters are super-tasters, what is the percentage of
the class that are super tasters?
22%
14. Individuals that are known as “Super tasters” are thought to have more of
the protein which binds to and detects PTC on their tongues compared to
tasters. Given this information, what genotype do you think that Supertasters
are and why?
TT, as they are homozygous testers due to their increased sensitivity to PTC.
15. If two parents, one heterozygote and one homozygous dominant for
PTC tasting were to have children, what are all the possible genotypes
and phenotypes?
tasters that are homozygous for TT and heterozygous for Tt.
Recall that using a Punnett square allows you to determine all the
possible genotype combinations that offspring could inherit from two
parents. In a Punnett square all possible types of sperm are lined up on one
side of the square and all types of eggs are lined up on the other. Then the
squares are filled in according to what each sperm and egg would give to the
resulting zygote. By analyzing all the resulting genotypes, it is possible to
calculate the probability of each genotype occurring.
Figure 7 shows two Punnett squares with all possible sperm displayed
on the vertical edge and all possible eggs on the horizontal edge. All boxes
have been filled in according to the alleles contributed by the sperm and egg
for that box. We can now calculate the probabilities of each genotype and
phenotype. All probabilities are out of 4, as this is a 4 square box.
For the left Punnett square, the single box filled with genotype bb is
highlighted in red. As this is the only bb present it has a probability of 1 in 4,
¼, or 25%. This is both the genotypic and phenotypic ratio.
For the right Punnett square there are three boxes highlighted in red,
indicating the dominant phenotypes. Because there are three of the four
boxes the phenotypic ratio is 3 of 4, ¾, or 75%. This is not the genotypic
ratio however as there are two genotypes included in these three selected
squares. The genotypic ratio for that Punnett square would be a 1:2:1 ratio.
Questions:
16. Fill in the Punnett square:
a a
A Aa Aa
a aa aa
17. Refer to question 16 above.
a. What is the probability of having offspring with a genotype of aa?
50%
b. What is the probability of having offspring with a genotype of
AA?
0%
c. What is the probability of dominant phenotype?
0%
18. In guinea pigs, the allele for short hair is dominant to long hair.
d. What genotype would a heterozygous short haired guinea pig
have?
Aa
e. What genotype would a homozygous short haired guinea pig
have?
AA
f. What genotype would a long-haired guinea pig have?
aa
g. Show the cross for two heterozygous guinea pigs.
A A
A A A
A a
a A a
a a
19. In guinea pigs curly hair is dominant to straight. Show the cross
between two homozygous curly haired guinea pigs.
A A
A A A
A A
A A A
A A
20. Punnett squares can also be used to predict genotypes of the parents.
A guinea pig with short hair is crossed to one that has long hair. Over a
period of years, a scientist keeps records of the offspring and finds that 44
of them have curly hair and 46 of them have straight hair. Based on this
data, what are the genotypes of the parents:
Aa x aa
Show the Punnett square of this cross to explain your reasoning.
A a
a A a
a a
a a a
a a
Genetic counselors are trained to detect inheritance patterns of genetic
diseases based on information they obtain from the family. Imagine that you
are a genetic counselor, and you must solve the following cases based on
the information provided. Use the following steps to solve each problem:
Create a legend that indicates the gene pairs (alleles) involved. Use a
capital letter to denote the dominant allele and lowercase letter to
denote the recessive allele.
Example: D= dimples d= no dimples
Write the genotype and phenotype of the parents. Example: DD →
dimples
Use a Punnett Square to cross the potential gametes of the parents.
Determine the probability based on the Punnett Square.
Autosomal Disorders:
21. Autosomal Recessive Inheritance (trait only expressed if
homozygous recessive)
An albino man (nn) marries a normally pigmented woman (N_) who has an
albino mother (nn). What is the chance that their children will be albino?
50%
X-Linked Disorders:
Recall that in many organisms, the determination of sex involves a pair
of chromosomes that differ in length and genetic content. These
chromosomes are called the sex chromosomes. Different organisms have
different systems. For today we will focus on the human system where males
are XY and females are XX. The X chromosome carries hundreds of genes
which are not necessary for sex determination but are necessary for correct
development and viability of the offspring. These genes are not present on
the Y chromosome and so display the characteristic pattern of inheritance
called sex-linkage or more commonly X-linkage.
Any XY individual that inherits an X-linked recessive disease allele
will be affected by it, because they do not have a second copy of the X
chromosome to provide a dominant allele. Therefore, in X-linked recessive
inheritance, XY individuals, commonly males, tend to be affected more
frequently than XX individuals, commonly females, in a population (see
Figure 8).
Figure 8: Some forms of color blindness are inherited as X-linked recessive traits.
Color blindness is diagnosed using tests such as this. Ishihara Test. (Wikipedia-
unknown-PD) (right) A pedigree consistent with XR inheritance. (Original-Deyholos-
CC:AN)
The reverse is true for X-linked dominant inheritance, where the
gene responsible for the disease is located on the X-chromosome, and the
allele that causes the disease is dominant. In this case XX individuals, tend
to be more frequently affected than XY individuals in the population because
they have two copies of the X chromosome (see Figure 9).
Keep in mind that in autosomal dominant and recessive traits, the sex
of the individual does not change the probability of being affected, because
all individuals have two copies of autosomes.
Questions:
26. In humans, hemophilia is a sex-linked trait. Females can be normal,
carriers, or have the disease. Males will either have the disease or not
(but they won’t ever be carriers).
Show the cross of a man who has hemophilia with a woman who is a
carrier.
XH Xh
Xh XHXh XhXh
Y XHY XhY
What is the probability that their children will have the disease? 50%
XB Xb
XB XBXB XBXb
Y XBY XbY
What is the probability that their children will have color blindness? 25%
30. A woman with normal vision, whose father was color blind, marries a
man with normal vision. What genotypes are possible in their offspring?
50%
XB XR XR Y
32. An orange male is crossed with a calico female. Show the Punnett
square and list the phenotypes and
proportions.
25% black male, 25% orange male, 25% calico female, and
25% orange female
34. A black male is crossed with a calico female. Show the Punnett square
and list the phenotypes and proportions.
XB XR XR Y
XB XR
Part 4: Human Traits not Governed XR YMendelian Genetics
by
- Multiple Alleles and Codominance
Figure 10: Representation of red blood cells and the antigens they carry. " Human
Inheritance" by LibreTexts is licensed under CC BY-NC-SA 3.0.
Questions:
35. If two individuals with blood type AB marry, what are the odds that
each of their children will have the AB blood type? 50%
36. A disputed paternity case! Hermione’s new baby has a blood type of O.
Her blood type is B and Ron Weasley’s is A. Harry Potter (blood type AB)
insists he is the child’s father. CAN THIS BE TRUE?
Half of the babies have Type O. That being said, there would have been little chance of being
Type O if the father had been AB.
37. A woman and her son are both blood type O. The woman claims that a
man with blood type A is the father of the boy. Is this possible? Explain
your answer.
Although there is a 25% chance that the child will be Type O, the father makes Type A more
likely.
39. It was suspected that two babies had been exchanged in a hospital.
Mr. and Mrs. Jones received baby #1 and Mr. and Mrs. Simon received
baby #2. Blood typing tests on the parents and the babies showed the
following:
1. Mr. Jones: Type A
2. Mrs. Jones: Type O
3. Baby #1: Type A
4. Mr. Simon: Type AB
5. Mrs. Simons: Type O
6. Baby #2 Type O
Key Points:
42. Do a search of your results and determine what the syndrome the
patient had. Write it and some of its symptoms here.
Analyze this karyotype (above) and determine if there is an abnormality with
the sex chromosomes.
43. What is the sex chromosome makeup?
44. What syndrome does this individual exhibit?
a. Klinefelter syndrome
b. Turner Syndrome
c. Poly-X syndrome
d. Jacob syndrome
Part 6: Pedigree Analysis
Geneticists illustrate the inheritance of a gene within a family by using
a pedigree chart. In a pedigree chart, males are symbolized by a square (□)
and females are symbolized by a circle (○). People who are affected by a
condition or disease are symbolized by a dark/filled square or circle. Carriers
are often symbolized by a half filled square or circle.
The pedigree chart below shows the inheritance of albinism in three
generations of a family. The couple labeled 1 and 2 had five children,
including one albino daughter (5). One of the sons (3) and his wife (4) had
four children, including one albino son (6).
Questions:
45. You will write the genotypes of each individual who is labeled with a
number in the pedigree. Use 'A' to represent the dominant allele and 'a' to
represent the recessive allele. Begin by writing in the genotypes of 5 and
6. How do you know their genotypes?
46. Explain how you can determine the genotypes of 1 and 2. Include the
Punnett Square for these parents in your explanation. Write their
genotypes in the pedigree.
48. Explain how you can figure out the genotype of 7 and write her
genotype in the pedigree.
Many other conditions are the result of homozygous recessive alleles, so
these conditions are inherited in the same manner as albinism. These
include:
49. Think about 5 and 6 and their children. Based on this family, is the
allele that causes achondroplasia recessive or dominant? How do you
know? Include a Punnett square for 5 and 6 and their children in your
answer. Use 'D' to represent the dominant allele and 'd' to represent the
recessive allele.
53. Most people who have the achondroplasia allele did not inherit this
allele from their parents. For a person who has the achondroplasia allele,
but did not inherit it from his or her parents, what biological process is the
most likely explanation for this person’s achondroplasia allele?