2.1 Cell Structure OCR A Level Biology Revision Notes
2.1 Cell Structure OCR A Level Biology Revision Notes
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Light microscopes
Light, or optical, microscopes use light to form an image
The maximum resolution of a light microscope is around 0.2 micrometres (µm), meaning that the
maximum useful magnification of optical microscopes is about ×1500
Light microscopes can only be used to observe larger structures, e.g.:
entire cells
nuclei
mitochondria and chloroplasts
While light microscopes have limited resolution, they do have advantages, such as:
they are small and relatively cheap
specimen preparation can be straightforward enough to perform in a school laboratory
they can be used to produce colour images
they allow the observation of living specimens
Light microscope image
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Light microscope images allow the observation of cell shape, as well as larger internal structures, e.g,
here chloroplasts can be seen within a series of plant cells
Your notes
Kelvinsong, via Wikimedia Commons
Electron microscopes
Electron microscopes use electrons to form an image
Electron microscopes have a maximum resolution of around 0.0002 µm, or 0.2 nm, and a maximum
magnification that range from around ×1,000,000 up to many millions
Electron microscopes can be used to observe small structures inside cells, such as:
cell membranes
ribosomes
the endoplasmic reticulum
lysosomes
While electron microscopes are essential tools in the study of cell biology, they do have some
limitations
They are very large and expensive
Specimens must be prepared using a highly complex process
Specimens must be viewed in a vacuum, meaning that live specimens cannot be observed
Images are always black and white, though they can be artificially coloured during processing
There are two types of electron microscope:
transmission electron microscopes (TEMs)
scanning electron microscopes (SEMs)
Transmission electron microscopes
TEMs use electromagnets to transmit a beam of electrons through a specimen; denser parts of the
specimen absorb more electrons, meaning that denser parts appear darker on the final image
TEMs produce images that:
are high-resolution
allow the internal structures within cells, and within organelles to be seen
are two-dimensional
TEM image
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Your notes
TEM images allow the internal structures within cells and organelles to be studied
Klingm01, via Wikimedia Commons
Scanning electron microscopes
SEMs pass a beam of electrons across the surface of a specimen and then detect the rate at which the
electrons bounce back
This means that SEMs produce images that:
are three-dimensional
show the surface of specimens
SEMs have a lower maximum resolution than TEMs
SEM image
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Your notes
SEM images are three-dimensional and show the surface of objects, e.g. here E. coli bacteria can be
seen
NIAID, via Flickr
Examiner Tip
In an exam you could be shown an image and asked to identify the microscope used to produce it, so
make sure that you understand the differences between the images produced by the different types
of microscope.
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Your notes
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This involves fixing the specimen using formaldehyde (preservative), dehydrating it using a series
of ethanol solutions, impregnating it in paraffin/resin for support then cutting thin slices from the
specimen using a microtome Your notes
The paraffin is removed from the slices/specimen, a stain is applied and the specimen is mounted
using a resin and a coverslip is applied
Or
Freeze the specimen in carbon dioxide or liquid nitrogen
Cut the specimen into thin slices using a cryostat
Place the specimen on the slide and add a stain
Gently place a coverslip on top and press down to remove any air bubbles
When using an optical microscope always start with the low power objective lens:
It is easier to find what you are looking for in the field of view
This helps to prevent damage to the lens or coverslip in case the stage has been raised too high
Preventing the dehydration of tissue:
The thin layers of material placed on slides can dry up rapidly
Adding a drop of water to the specimen (beneath the coverslip) can prevent the cells from being
damaged by dehydration
Unclear or blurry images:
Switch to the lower power objective lens and try using the coarse focus to get a clearer image
Consider whether the specimen sample is thin enough for light to pass through to see the
structures clearly
There could be cross-contamination with foreign cells or bodies
Using a graticule to take measurements of cells:
A graticule is a small disc that has an engraved ruler
It can be placed into the eyepiece of a microscope to act as a ruler in the field of view
As a graticule has no fixed units it must be calibrated for the objective lens that is in use. This is
done by using a scale engraved on a microscope slide (a stage micrometer)
By using the two scales together the number of micrometers each graticule unit is worth can be
worked out
After this is known the graticule can be used as a ruler in the field of view
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The stage micrometer scale is used to find out how many micrometers each graticule unit represents
Limitations
The size of cells or structures of tissues may appear inconsistent in different specimen slides
Cell structures are 3D and the different tissue samples will have been cut at different planes
resulting in this inconsistencies when viewed on a 2D slide
Optical microscopes do not have the same magnification power as other types of microscopes and so
there are some structures that can not be seen
The treatment of specimens when preparing slides could alter the structure of cells
Examiner Tip
Remember the importance of calibration when using a graticule. If it is not calibrated then the
measurements taken will be completely arbitrary!
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Your notes
Toluidine blue and phloroglucinol have been used to stain this tissue specimen taken from a leaf
Staining for electron microscopy
When using Transmission electron microscopes (TEMs) the specimen must be stained in order to
absorb the electrons
Unlike light, electrons have no colour
The dyes used for staining cause the tissues to show up black or different shades of grey
Heavy-metal compounds are commonly used as dyes because they absorb electrons well
Osmium tetroxide and ruthenium tetroxide are examples
Any of the colour present in electron micrographs is not natural and it is also not a result of the staining
Colours are added to the image using an image-processing software
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The internal structure of the mitochondrion can be seen using a TEM and staining
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A spiracle found on the exoskeleton of an insect. No colours have been added to this image using
image-processing software.
Your notes
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Your notes
An example of a tissue plan drawn from a low-power image of a transverse section of a root. There is no
cell detail present.
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Examiner Tip
Your notes
When producing a biological drawing, it is vital that you only ever draw what you see and not what you
think you see.To accurately reflect the size and proportions of structures you see under the
microscope, you should get used to using the eyepiece graticule.You should be able to describe and
interpret photomicrographs, electron micrographs and drawings of typical animal cells.
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Worked example
An image of an animal cell is 30 mm in size and it has been magnified by a factor of ×3000.
What is the actual size of the cell?
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Worked example
Your notes
= 25
So the magnification is ×25 Your notes
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Resolution
Resolution can be defined as:
The ability to distinguish separate points on an image as two separate objects
The higher the resolution, the shorter the distance at which the two objects can be clearly
distinguished
The ability of a microscope to resolve two objects as separate points is dependent on the method of
image generation:
Light microscopes: the resolution is limited by the wavelength of light
As light passes close to physical structures it is diffracted, meaning that light waves spread
out
The closer the structures are to each other, the more the light waves overlap each other as
they are diffracted
Points that are closer together than half the wavelength of visible light cannot be clearly
distinguished from each other
Electron microscopes: the resolution is much higher because electrons have a smaller
wavelength than visible light
The objects past which the electrons travel can therefore be much closer together before the
diffracted beams overlap
Resolution diagram
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Your notes
The resolving power of an electron microscope is much greater than that of a light microscope; this is
because electrons have a smaller wavelength than visible light
Comparing light and electron microscopes
Light microscopes:
have a maximum resolution of 200 nm
have a maximum useful magnification of around ×1500-2000
can be used for viewing living or dead specimens
are useful for looking at whole cells, small organisms and tissues within organs such as in leaves or
skin
Electron microscopes:
have a maximum resolution of 0.5 nm (TEM) or 3-10 nm (SEM)
are capable of generating images with a magnification of more than ×500 000
TEMs are capable of higher magnification than SEMs due to their higher resolution
can only be used for viewing dead specimens
are useful for looking at organelles and viruses, as well as looking at whole cells in more detail
Light and electron microscopes comparison table
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Your notes
Examiner Tip
You do not need to be able to recall the exact numbers for resolution and magnification in different
types of microscope, but you must have an appreciation of how the values differ between light
microscopes, TEMs and SEMs.
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The structure of the cell surface membrane – although the structure looks static the phospholipids and
proteins forming the bilayer are constantly in motion
All cells are surrounded by a cell surface membrane which controls the exchange of materials between
the internal cell environment and the external environment
The membrane is described as being ‘partially permeable’
The cell membrane is formed from a phospholipid bilayer of phospholipids spanning a diameter of
around 10 nm
Cell wall
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Your notes
The cell wall is freely permeable to most substances (unlike the plasma membrane)
Found in plant cells but not in animal cells
Cell walls are formed outside of the cell membrane and offer structural support to cell
Structural support is provided by the polysaccharide cellulose in plants, and peptidoglycan in most
bacterial cells
Narrow threads of cytoplasm (surrounded by a cell membrane) called plasmodesmata connect the
cytoplasm of neighbouring plant cells
Nucleus
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The nucleus of a cell contains chromatin (a complex of DNA and histone proteins) which is the genetic
material of the cell
Present in all eukaryotic cells (except red blood cells), the nucleus is relatively large and separated
from the cytoplasm by a double membrane (the nuclear envelope) which has many pores
Nuclear pores are important channels for allowing mRNA and ribosomes to travel out of the nucleus, as
well as allowing enzymes (eg. DNA polymerases) and signalling molecules to travel in
The nucleus contains chromatin (the material from which chromosomes are made)
Chromosomes are made of sections of linear DNA tightly wound around proteins called histones
Usually, at least one or more darkly stained regions can be observed – these regions are individually
termed ‘nucleolus’ (plural: nucleoli) and are the sites of ribosome production
Mitochondria
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A single mitochondrion is shown – the inner membrane has protein complexes vital for the later stages
of aerobic respiration embedded within it
The site of aerobic respiration within all eukaryotic cells, mitochondria are just visible with a light
microscope
Surrounded by double-membrane with the inner membrane folded to form cristae
The matrix formed by the cristae contains enzymes needed for aerobic respiration, producing ATP
Small circular pieces of DNA (mitochondrial DNA) and ribosomes are also found in the matrix (needed
for replication)
Chloroplasts
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Chloroplasts are found in the green parts of a plant – the green colour a result of the photosynthetic
pigment chlorophyll
Found in plant cells
Larger than mitochondria, also surrounded by a double-membrane
Membrane-bound compartments called thylakoids containing chlorophyll stack to form structures
called grana
Grana are joined together by lamellae (thin and flat thylakoid membranes)
Chloroplasts are the site of photosynthesis:
The light-dependent stage takes place in the thylakoids
The light-independent stage (Calvin Cycle) takes place in the stroma
Also contain small circular pieces of DNA and ribosomes used to synthesise proteins needed in
chloroplast replication and photosynthesis
Ribosomes
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Ribosomes are formed in the nucleolus and are composed of almost equal amounts of RNA and protein
Found in all cells
Found freely in the cytoplasm of all cells or as part of the rough endoplasmic reticulum in eukaryotic
cells
Each ribosome is a complex of ribosomal RNA (rRNA) and proteins
80S ribosomes (composed of 60S and 40S subunits) are found in eukaryotic cells
70S ribosomes (composed of 50S and 30S subunits) in prokaryotes, mitochondria and chloroplasts
Site of translation (protein synthesis)
Endoplasmic reticulum
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The RER and ER are visible under the electron microscope - the presence or absence of ribosomes helps
to distinguish between them
Rough Endoplasmic Reticulum (RER)
Found in plant and animal cells
Surface covered in ribosomes
Formed from continuous folds of membrane continuous with the nuclear envelope
Processes proteins made by the ribosomes
Smooth Endoplasmic Reticulum (ER)
Found in plant and animal cells
Does not have ribosomes on the surface, its function is distinct to the RER
Involved in the production, processing and storage of lipids, carbohydrates and steroids
Golgi apparatus (golgi complex)
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The ultrastructure of an animal cell shows a densely packed cell – the ER and RER and ribosomes form
extensive networks throughout the cell in reality.
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Your notes
Plant cells have a larger, more regular structure in comparison to animal cells.
Describing and interpreting photomicrographs, electron micrographs and drawings of typical
animal/plant cells is an important skill
The organelles and structures within cells have a characteristic shape and size which can be helpful
when having to identify and label them in an exam
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TEM electron micrograph of an animal cell showing key features. Notice the lack of a cell wall.
TEM electron micrograph of a plant cell showing key features. Notice the presence of a cell wall and
vacuole.
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More detailed structures can be seen and identified in electron micrographs compared to
photomicrographs
This is because electron microscopes have greater maximum magnification and resolution than light Your notes
(optical) microscopes
Mucus producing goblet cells (found in the lining of trachea, bronchi and larger bronchioles) are shown
in a photomicrograph
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Your notes
Details of the structures inside the goblet cell can be seen in an electron micrograph
Examiner Tip
Make sure to learn the key identifying features of animal cells vs plant cells! It might also help to
familiarise yourself with the shapes and sizes of important structures and organelles found in cells by
finding some more photomicrographs and electron micrographs.
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Multiple cellular structures are involved in the production and secretion of proteins
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The cytoskeleton provides mechanical strength to cells, aids transport within cells and enables cell
movement
Examiner Tip
For the exam, you only need to be aware of the two main types of protein fibres within the
cytoskeleton: microfilaments and microtubules. The third type (intermediate filaments) are shown here
to give extra detail on the composition of the cytoskeleton.
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Your notes
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Prokaryotic cells are often described as being ‘simpler’ than eukaryotic cells, and they are believed to
have emerged as the first living organisms on Earth.
There are a number of important structural and physiological differences between prokaryotic and
eukaryotic cells
These differences affect their metabolic processes and how they reproduce
Prokaryotic & Eukaryotic Cells Comparison Table
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Your notes
Examiner Tip
You will need to know all the differences between prokaryotic and eukaryotic cells. Remember - the
features in the table above are not present in all prokaryotes so keep this in mind when answering exam
questions. Also, size is not a structural feature so if you are asked for a structural difference between a
prokaryotic and eukaryotic cell don't include size in your answer.
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