Lecture 3. the Cell 1
Lecture 3. the Cell 1
1.
A Tour of the Cell
2. Membrane Structure
and Function
2
OUTLINES
1. A Tour of the Cell
3
1.4. The endomembrane system regulates
protein traffic and performs metabolic
functions in the cell
1.5. Mitochondria and chloroplasts change
energy from one form to another
4
1.1. To study cells, biologists use microscopes
and the tools of biochemistry kính hiển vi
10 m
Human height
1m Length of some
Unaided eye
nerve and
muscle cells
0.1 m
Chicken egg
1 cm
Frog egg
1 mm
Light microscope
100 µm
Most plant and
animal cells
10 µm Nucleus
Electron microscope
Most bacteria
Mitochondrion
1 µm
Smallest bacteria
100 nm
Viruses
Ribosomes
10 nm
Proteins
Lipids
1 nm
Small molecules
0.1 nm Atoms 5
Cell Fractionation
Tissue Homogenization
cells
Takes cells apart and Homogenate
separates the major 1,000 g
(1,000 times the
organelles from one force of gravity) Differential centrifugation
10 min
another Supernatant poured
into next tube
Enables scientists 20,000 g
to determine the 20 min
functions of
organelles Pellet rich in
80,000 g
60 min
nuclei and
cellular debris
150,000 g
3 hr
Pellet rich in
mitochondria
(and chloro-
plasts if cells
are from a plant) Pellet rich in
“microsomes”
(pieces of plasma
membranes and
cells’ internal Pellet rich in
membranes) ribosomes
1.2. Eukaryotic cells have internal membranes
that compartmentalize their functions
7
Prokaryotic cells are characterized by having
– No nucleus
– DNA in an unbound region called the nucleoid
– No membrane-bound organelles
– Cytoplasm bound by the plasma membrane
– Include: Bacteria
Fimbriae
Nucleoid
Ribosomes
Plasma membrane
Bacterial Cell wall
chromosome Capsule
0.5 µm
(a) A typical Flagella (b) A thin section
rod-shaped through the
bacterium bacterium
Bacillus 8
coagulans (TEM)
Eukaryotic cells are characterized by having
– DNA in a nucleus that is bounded by a
membranous nuclear envelope
– Membrane-bound organelles
– Cytoplasm in the region between the plasma
membrane and nucleus
– Include: Protists, fungi, animals, and plants
A Panoramic View of the Eukaryotic Cell
• A eukaryotic cell has internal membranes that
partition the cell into organelles
• Plant and animal cells have most of the same
organelles
9
Nuclear
envelope
ENDOPLASMIC RETICULUM (ER) nhân con
Nucleolus NUCLEUS
Rough ER Smooth ER
Flagellum Chromatin
Centrosome
Plasma
membrane
CYTOSKELETON:
Microfilaments
Intermediate
filaments
Microtubules
Ribosomes
Microvilli
Golgi
Peroxisome apparatus
Mitochondrion
Lysosome
10
Nuclear envelope Rough endoplasmic
reticulum
NUCLEUS Nucleolus
Chromatin
Smooth endoplasmic
reticulum
Ribosomes
Central vacuole
Golgi
apparatus
Microfilaments
Intermediate
filaments CYTO-
SKELETON
Microtubules
Mitochondrion
Peroxisome
Chloroplast
Plasma where ATP from
membrane
Cell wall
Plasmodesmata
Wall of adjacent cell
11
Secretion process for proteins synthesized by ER
3
Rough ER
Secretory
2 4 vesicles
Rough ER
lumen 6
Golgi complex
5
Lysosome
7
Cytoplasm
12
1.3. The eukaryotic cell’s genetic instructions
are housed in the nucleus and carried out by
the ribosomes
13
taken photo by light microscope
Nucleus
1 µm Nucleolus
Chromatin
Nuclear envelope:
Inner membrane
Outer membrane
Nuclear pore
Pore
complex
Rough ER
Surface of
nuclear envelope
Ribosome 1 µm
0.25 µm
Close-up of nuclear
envelope
15
1.4. The endomembrane system regulates
protein traffic and performs metabolic
functions in the cell
16
The Endoplasmic Reticulum:
Biosynthetic Factory
17
Smooth ER
Rough ER Nuclear
envelope
ER lumen
Cisternae
Ribosomes Transitional ER
Transport vesicle 200 nm
Smooth ER Rough ER
18
Functions of Smooth ER
– Synthesizes lipids
– Metabolizes carbohydrates
– Detoxifies poison
– Stores calcium
Functions of Rough ER
– Has bound ribosomes, which secrete
glycoproteins (proteins covalently bonded to
carbohydrates)
– Distributes transport vesicles, proteins
surrounded by membranes
– Is a membrane factory for the cell
19
The Golgi Apparatus: Shipping
and Receiving Center
20
cis face
(“receiving” side of 0.1 µm
Golgi apparatus) Cisternae
trans face
(“shipping” side of TEM of Golgi apparatus
Golgi apparatus)
21
Lysosomes: Digestive Compartments
22
(a) Phagocytosis (b) Autophagy
Nucleus 1 µm Vesicle containing 1 µm
two damaged organelles
Mitochondrion
fragment
Peroxisome
fragment
Lysosome
Digestive
enzymes Lysosome
Lysosome
Plasma Peroxisome
membrane
Digestion
Nucleus Central
vacuole
Cell wall
Chloroplast
5 µm 24
Nucleus
Rough ER
Smooth ER
cis Golgi
Plasma
trans Golgi membrane
26
Mitochondria: Chemical Energy
Conversion
Outer and inner membrane folded into cristae
Cristae present a large surface area for enzymes
that synthesize ATP
The inner membrane creates two compartments:
intermembrane space and mitochondrial matrix
Intermembrane
space Outer
membrane
Free ribosomes
in the mitochondrial
matrix Inner
membrane
Cristae
Matrix
27
0.1 µm
Chloroplasts: Capture of Light Energy
Is a member of a family of organelles called plastids
Contains enzymes & green pigments for Photosynthesis
Are found in leaves and other green organs of plants
Chloroplast structure includes:
•Thylakoids, membranous sacs, stacked to form a
granum
•Stroma, the internal fluid
Ribosomes
Stroma
Inner and outer
membranes
Granum
1 µm
Thylakoid 28
Peroxisomes: Oxidation
Are specialized metabolic compartments bounded
by a single membrane
Produce hydrogen peroxide and convert it to water
Oxygen is used to break down different types of
molecules
Chloroplast
Lysosome and peroxisome
work togerther: Peroxisome
- Lysosome use enzim to work
- Peroxisome use oxygen
Mitochondrion
1 µm 29
1.6. The cytoskeleton is a network of
fibers that organizes structures and
activities in the cell
moving
30
Components of the Cytoskeleton
Microtubules are the thickest of the three components
of the cytoskeleton
Microfilaments, also called actin filaments, are the
thinnest components
Intermediate filaments are fibers with diameters in a
middle range
Microtubules Microfilaments Intermediate filaments
10 µm 10 µm 10 µm
Functions of microtubules:
• Shaping the cell
• Guiding movement of organelles
• Separating chromosomes during cell division
Centrosomes and Centrioles
• The centrosome is a “microtubule-organizing
center”
• In animal cells, the centrosome has a pair of
centrioles, each with nine triplets of microtubules
arranged in a ring
32
Centrosome
Microtubule
Centrioles
0.25 µm
Power
Recovery
stroke
stroke
Muscle cell
Actin filament
Myosin filament
Myosin arm
35
Intermediate Filaments
• Support cell shape and fix organelles in place
• Are more permanent cytoskeleton fixtures than the
other two classes
Microvillus
Plasma membrane
Microfilaments
(actin filaments)
Intermediate filaments
0.25 µm 36
1.7. Extracellular components and
connections between cells help
coordinate cellular activities
37
Cell Walls of Plants
• Prokaryotes, fungi, and some protists also have cell
walls
• The cell wall protects the plant cell, maintains its
shape, and prevents excessive uptake of water
Middle
lamella
1 µm
Central vacuole
Cytosol
Plasma membrane
Plasmodesmata 39
The Extracellular Matrix (ECM) of
Animal Cells
• The ECM is made up of glycoproteins such as collagen,
proteoglycans, and fibronectin
• ECM proteins bind to receptor proteins in the plasma
membrane called integrins
Polysaccharide molecule
Proteoglycan
Collagen complex Carbo-
EXTRACELLULAR
FLUID hydrates
Core
Fibronectin protein
Integrins
Plasma
membrane Proteoglycan
molecule
CYTOPLASM Microfilaments
Proteoglycan complex
40
Intercellular Junctions
Plasmodesmata in Plant Cells
Are channels that perforate plant cell walls
Water and small solutes (and sometimes proteins
and RNA) can pass from cell to cell
Cell walls
Interior
of cell
Interior
of cell
0.5 µm Plasmodesmata Plasma membranes
41
Tight Junctions, Desmosomes, and Gap
Junctions in Animal Cells
42
Intercellular junctions in animal tissues
Tight junctions prevent Tight
fluid from moving junction
across a layer of cells
cell 1
cell 2
0.5 µm
Gap 1 µm
junctions
Space
between Extracellular
cells Gap
matrix junction
Plasma membranes
of adjacent cells 43
0.1 µm
Similarities between plant cells
and animal cells
44
Differences between plant cells
and animal cells
2. Membrane Structure
and Function
2.1. Cellular membranes are fluid mosaics of
lipids and proteins
2.2. Membrane structure results in selective
permeability
46
2.1. Cellular membranes are fluid mosaics of
lipids and proteins
47
The fluid mosaic model for membranes
Phospholipid
bilayer
WATER
Hydrophilic
head
Hydrophobic
tail
WATER 48
• Freeze-fracture studies of the plasma membrane
supported the fluid mosaic model
• Freeze-fracture is a specialized preparation
technique that splits a membrane along the middle
of the phospholipid bilayer
TECHNIQUE RESULTS
Extracellular
layer
49
The Fluidity of Membranes
Phospholipids in the plasma membrane can move
within the bilayer two ways
Fluid Viscous
51
The steroid cholesterol has different effects on
membrane fluidity at different temperatures:
- Reduce fluidity at moderate temp
- Enhance fluidity at low temp
Cholesterol
Glyco- Carbohydrate
protein Glycolipid
EXTRACELLULAR
SIDE OF MEMBRANE
Cholesterol
Microfilaments Peripheral
of cytoskeleton proteins Integral
protein CYTOPLASMIC
SIDE OF MEMBRANE 53
Six major functions of membrane proteins:
– Transport
– Enzymatic activity
– Signal transduction
– Cell-cell recognition
– Intercellular joining
– Attachment to the cytoskeleton and extracellular
matrix (ECM)
54
a) Transport. (left) Provide a hydrophilic channel
across the membrane that is selective for a
particular solute.
(right) Shuttle a substance from one side to the
other by changing shape. ATP: an energy source ATP
Enzymes
b) Enzymatic activity. Active site exposed to
substances in the adjacent solution. In some
cases, several enzymes in a membrane are
organized as a team that carries out sequential
steps of a metabolic pathway.
Signaling molecule
c) Signal transduction. A binding site with a
Receptor
specific shape that fits the shape of a
chemical messenger. => conformational
change in the protein (receptor) => relays the
message to the inside of the cell.
Signal transduction 55
d) Cell-cell recognition. Some glyco-proteins
serve as identification tags that are specifically
recognized by other cells. Glyco-
Membrane carbohydrates: Interact with the protein
surface molecules of other cells, facilitating cell-
cell recognition
57
Synthesis and Sidedness of Membranes
ER
1
Membranes have Transmembrane
distinct inside and glycoproteins
Secretory
outside faces protein
This affects the Glycolipid
Membrane glycolipid
58
2.2. Membrane structure results in selective
permeability tính thấm chọn lọc
59
The Permeability of the Lipid Bilayer
60
Transport Proteins
Transport proteins allow passage of hydrophilic
substances across the membrane
• Some transport proteins, called channel proteins,
have a hydrophilic channel that certain molecules
or ions can use as a tunnel
• Other transport proteins, called carrier proteins,
bind to molecules and change shape to shuttle
them across the membrane
• A transport protein is specific for the substance it
moves
61
2.3. Passive transport is diffusion of a
substance across a membrane with no
energy investment
Diffusion
62
Molecules of dye Membrane (cross section)
WATER
H 2O
Selectively
permeable
membrane
Osmosis 64
Water Balance of Cells Without Walls
65
water go out water go in
Hypotonic solution Isotonic solution Hypertonic solution
(a) Animal
cell
(b) Plant
cell
66
Water Balance of Cells with Walls
67
Facilitated Diffusion:
Passive Transport Aided by Proteins
A channel protein
Provide corridors that allow a specific molecule or
ion to cross the membrane
EXTRACELLULAR
FLUID
70
EXTRACELLULAR
[Na+] high Na+
FLUID [K+] low Na+
Na+ Na+
Na+
[Na+] low ATP
Na+ P P
[K+] high
CYTOPLASM ADP
1 2 3 Phosphorylation
Cytoplasmic Na+ Na+ binding stimulates
binds to the sodium- phosphorylation by ATP. causes the protein to+
potassium pump. change its shape. Na is
expelled to the outside.
P
P
6 5 Loss of the 4 K+ binds on the
K+ is released, and phosphate restores extracellular side and
the cycle repeats. the protein’s triggers release of the
original shape. phosphate group. 71
Passive transport. Substances diffuse Active transport. Some transport
spontaneously down their concentration proteins act as pumps, moving
gradients, crossing a membrane with no substances across a membrane
expenditure of energy by the cell. against their concentration
The rate of diffusion can be greatly increased gradients. Energy for this work is
by transport proteins in the membrane. usually supplied by ATP
Diffusion. ATP
Hydrophobic Facilitated diffusion.
molecules and very Many hydrophilic substances
small uncharged diffuse through membranes
polar molecules can with the assistance of
diffuse through the transport proteins, either
lipid bilayer. channel or carrier proteins.
72
How Ion Pumps Maintain
Membrane Potential
– + EXTRACELLULAR
FLUID
ATP – + H+
Proton pump H+
H+
– + H+
H+
– +
CYTOPLASM
H+
– +
74
Cotransport: Coupled Transport by
a Membrane Protein
Cotransport occurs when active transport of a
solute indirectly drives transport of another solute
– +
ATP H+
H+
– +
Proton pump H+
H+
– +
H+ – H+
+
H+ Diffusion
Sucrose-H+ of H+
cotransporter
Sucrose H+
– +
Cotransport: Active transport driven by
a concentration–gradient + Sucrose 75
Bulk transport across the plasma
membrane occurs by exocytosis
and endocytosis
76
Exocytosis
• Transport vesicles migrate to the membrane, fuse
with it, and release their contents
• Many secretory cells use exocytosis to export their
products
77
Endocytosis
• In endocytosis, the cell takes in macromolecules
by forming vesicles from the plasma membrane
• Endocytosis is a reversal of exocytosis, involving
different proteins
There are three types of endocytosis:
– Phagocytosis (“cellular eating”)
– Pinocytosis (“cellular drinking”)
– Receptor-mediated endocytosis
78
Phagocytosis
• a cell engulfs a particle in a vacuole
• The vacuole fuses with a lysosome to digest the
particle
PHAGOCYTOSIS
EXTRACELLULAR CYTOPLASM 1 µm
FLUID
Pseudopodium
Pseudopodium
of amoeba
“Food” or
other particle Bacterium
Food
vacuole Food vacuole
An amoeba engulfing a bacterium
via phagocytosis (TEM)
79
Pinocytosis
80
Receptor-Mediated Endocytosis
82
Knowledge Testing 1 (Cont.)
5. Compare the structure and functions of
microtubules, microfilaments, and intermediate
filaments
6. Describe the structure and roles of the
extracellular matrix in animal cells
7. Describe four different intercellular junctions
83
Knowledge Testing 2
1. Explain how membrane fluidity is influenced by
temperature and membrane composition
2. Distinguish between the following pairs or sets of
terms: peripheral and integral membrane
proteins; channel and carrier proteins; osmosis,
facilitated diffusion, and active transport;
hypertonic, hypotonic, and isotonic solutions.
3. Explain how an electrogenic pump creates
voltage across a membrane, and name two
electrogenic pumps. Explain how large
molecules are transported across a cell
membrane
84