M Tech in Pharmaceutical Biotechnology Syllabus
M Tech in Pharmaceutical Biotechnology Syllabus
Pharmaceutical
Biotechnology
Semester- I
5. Elective II (2+1) 50 3
TOTAL 39 450 3
Semester- II
5. Elective IV (2+1) 50 3
PBL 2002 Laboratory –II
6. Practical (Microbiology 6 50 3
and Molecular
biology)
PBT 2116 Research II
7. Research II 18 150 9
TOTAL 39 450 27
Semester- III
TOTAL 40 450 30
Semester- IV
TOTAL 40 450 30
3. Research Methodology
Research
1. Meaning of Research, Purpose of Research, Types of Research (Educational, Clinical,
Experimental, Historical, Descriptive, Basic applied and Patent Oriented Research) –
Objective of research-
2. Literature survey – Use of Library, Books, & Journals – Medline – Internet, getting
patents and reprints of articles as sources for literature survey.
3. Selecting a problem and preparing research proposal for different types of research
mentioned above.
4. Methods and tools used in Research
• Qualitative studies, Quantitative Studies
• Simple data organization, Descriptive data analysis
• Limitations and sources of Error
• Inquiries in form of Questionnaire, Opinionnaire or by interview
• Statistical analysis of data including variance, standard deviation, students ‘t’ test and
annova, correlation data and its interpretation, computer data analysis,
5. Documentation
• “How” of Documentation
• Techniques of Documentation
• Importance of Documentation
• Uses of computer packages in Documentation
6. The Research Report / Paper writing / thesis writing
• Different parts of the Research paper
• Title – Title of project with author’s name
• Abstract – Statement of the problem Background list in brief and purpose and scope
• Key-words-
• Methodology-Subject, Apparatus / Instrumentation, (if necessary) and procedure
• Results – tables, Graphs, Figures, and statistical presentation
• Discussion – Support or non- support of hypothesis – practical & theoretical implications,
conclusions
• Acknowledgements
• References
• Errata
• Importance of spell check for Entire project
• Use of footnotes
7. Presentation (Specially for oral)
• Importance, types, different skills
• Content of presentation, format of model, Introduction and ending
• Posture, Genstures, Eye contact, facial expressions stage fright
• Volume- pitch, speed, pauses & language
• Visual aids and seating
• Questionnaire
8. Protection of patents and trade marks, Designs and copyrights
• The patent system in India – Present status Intellectual property Rights (IPR), Future
changes expected in Indian Patents
• Advantages
• The Science in Law, Turimetrics (Introduction)
• What may be patented
• Who may apply for patent
• Preparation of patent proposal
• Registration of patent in foreign countries and vice-versa
9. Sources for procurement of Research Grants
10. Industrial- Institution Interaction
• Industrial projects – Their feasibility reports
• Research in Education – Johan V. Best James V. Kahn
• Presentation skills- Michael Halton- Indian Society for Institute Education
• A Practical Introduction to copy right – Gavin Mcfarlane
• Thesis projects in Science and Engineering – Richard M. Davis
• Scientists in legal system – Ann labor science
• Thesis and Assignment writing – Jonathan Anderson
• Writing a technical paper- Donald Menzel
• Effective Business Report writing – Leland Brown
• Protection of Industrial property rights- Purushottam Das and Gokul Das
• Spelling for the million – Edna furmess
• Preparing for publication – King Edwards Hospital fund for London
• Information technology – The Hindu speaks
• Documentation – Genesis & Development 3792
• Manual for evaluation of Industrial projects – United Nations
• Manual for the preparation of Industrial feasibility studies
4. Pharmaceutical Biotechnology II
1. Animal Cell Culture: Historical Background, Importance of and progress in Animal Cell
Culture, Technology, Biology of Animal Cell; Cellular Interactions, Importance of Serum
and Serum Free Media, Culturing and Sub-Culturing of Animal Cells, InVitro
Transformation of Animal Cells, Cell Differentiation & Cell Movement, Cloning of
Animal Cells, Cell Line Preservation, Cell Line Characterization, Chromosome
Spreading and Karyotype Analysis, Mycoplasma: Detection and Control, Monoclonal
Antibody Production, Insect Cell Culture: An Overview
2. Plant cell culture: History and evolution, Basics of aseptic culture, In vitro propagation,
use of plant growth regulators in tissue culture, plant regeneration, organogenesis,
somatic embryogenesis, protoplast isolation and culture, somaclonal variation, in vitro
mutagenesis, in vitro selection, secondary metabolite production and cell transformation
techniques (including protoplast fusion, direct DNA uptake and plant/ bacterial co-
cultivation), use of in vitro techniques for crop improvement.
3. Omics: Proteomics, Genomics and Metabolomics: Introduction to the definitions of
various ‘omics’, introduction to the general field of genomics and proteomics,
introduction to some methods used in analyzing gene expression at the mRNA and
protein level, basic principles of DNA/Protein microarrays and their applications.
4. Physical aspects of the genome. Construction and study of various types of genome maps
and large-scale sequencing. The human genome project and the plant genome program.
Structural genomics and gene discovery, isolation, localization and characterization.
Developing diagnostic tests for plant, animal and human diseases. Identification of
biomarkers. Finding genetic markers for plant breeding purposes. Environmental impacts
on gene expression. Protein complex structures and amino acids. Protein shapes as
affecting its function. Amino acid sequencing. Cellular proteome changes in response to
environmental and neighbouring cells conditions. Cataloguing the proteins produced by
different cells. Discovering the function of a protein. Determining three-dimensional
structure of proteins. Protein crystallography.
5. Integrons and transposons
6. Regulatory aspects of biotechnology based products
4. Advanced Biochemistry
1. Proteins: Structures – primary, secondary, tertiary, motifs, structural and functional
domains, protein families and macromolecular assemblies.
2. Mechanisms for regulating protein function: Protein-protein interactions, interaction with
ligands, Ca¬+2 and GTP as modulators, cyclic phosphorylation and dephosphorylation,
proteolytic cleavage.
3. Purification and characterization of proteins: Electrophoresis, ultracentrifugation and
liquid chromatography, use of biological assays, use of radioisotopes and MS, X-ray
crystallography, NMR and Homology modeling, amino acid analysis, cleavage of
peptides, protein sequencing.
4. Protein biosynthesis: Translation machinery in prokaryotic and eukaryotic systems,
comparison of similarities and differences.
5. DNA and nucleic acids: DNA, RNA structure, nomenclature, double helix,
conformations, higher order packing and architecture of DNA, transcription and
replication of DNA – mechanisms in prokaryotic and eukaryotic systems, DNA repair
mechanisms.
6. Carbohydrates: Mono, di and polysaccharides and their nomenclature, stereochemistry,
linkages, conjugates of carbohydrates with other molecules - glycoproteins, glycolipids,
proteoglycans, lipopolysaccharides and their biological roles.
7. Lipids: Classification, nomenclature, stereochemistry, storage lipids, membrane lipids,
lipids as second messengers and cofactors, biological role of lipids
5.Advanced Bioinformatics
1. Motif and cis-Regulatory Module (CRM) Modeling: learning motif models, learning
models of cis-regulatory modules, Gibbs sampling, Dirichlet priors, parameter tying,
heuristic search, HMM structure search, sequence entropy and mutual information,
duration modeling, semi-Markov models
2. Gene Finding: the gene finding task, maximal dependence decomposition, interpolated
Markov models, back-off models, pairwise HMMs, Genscan, Twinscan, SLAM
3. RNA-Seq: RNA-Seq technology, transcript quantification with RNA-Seq
4. RNA Analysis: predicting RNA secondary structure, Nussinov/energy-minimization
algorithms, stochastic context free grammars, Inside/Inside-Outside/CYK algorithms,
searching sequences for a given RNA secondary structure, RSEARCH, RNA gene
recognition via comparative sequence analysis, microRNA gene/target prediction
5. Large-Scale and Whole-Genome Sequence Alignment: large-scale alignment, whole-
genome alignment, parametric alignment, suffix trees, locality sensitive hashing, k-mer
tries, sparse dynamic programming, longest increasing subsequence problem, Markov
random fields, MUMmer, LAGAN/MLAGAN, Mauve, Mercator
6. Biological network inference and evolution: Network inference, models of biological
network evolution, network alignment
7. Genotype Analysis: haplotype inference, genome-wide association studies (GWAS),
quantitative trait loci (QTL) mapping
8. Protein Structure Prediction: secondary structure prediction, threading, branch and bound
search, ROSETTA
6. Bio-statistics
1. Application of Statistics, bioinformatics and experimental design to biotech processes:
Sampling procedures, populations; types of data, data organization and presentation.
2. Correlation and Regression, linear and quadratic regression Analysis of variance.
3. Correlation coefficient; regression analysis; multivariate analysis; principal component
analysis. Probability. Probability distribution.
4. Testing of hypothesis. Experimental design and factorial design.
5. Concepts and use of software. RSM and ANN techniques for optimization of
fermentative processes
7. Drug Metabolism
1. Introduction to the different pathways of drug metabolism: Phase I and II reactions, sites
of drug metabolism, subcellular localization of drug metabolizing enzymes, cofactors
required for catalytic reactions
2. Cytochrome P450 oxidative system: Catalytic cycle of P450 reactions, mechanism of
P450 hydroxylation reactions, introduction to CYP450 superfamily of enzymes and their
classification, human CYP450s involved in drug metabolism and their typical substrates,
inhibitors and inducers.
3. Introduction to other drug metabolism enzyme isoforms/families
Glucuronosyltransferases, glutathione transferases, sulfotransferases, N-
acetyltransferases, FMO’s.
4. Methods for studying drug metabolism: Isolated enzymes, recombinant enzymes,
subcellular fractions, hepatocytes, perfused liver, in-vivo drug metabolism studies –
introduction to these methods, their utility, advantages and limitations
5. Introduction to in-silico methods for predicting drug metabolism: Principles behind
development of these systems, their potential and their limitations.
8. Environmental biotechnology
1. Application of biotechnology in agriculture e.g. pest control, herbicide resistance
2. GM crops and farm animals, bio-fertilizers
3. Alternative energy resources including biogas, alcohol etc.
4. Treatment of waste from domestic, industrial, agricultural etc. and bioremediation
Environmental security and safety; Socio-economic aspects of GM crops