On the Genuine Relevance of the Data-Driven Signal Decomposition-Based Multiscale Permutation Entropy
On the Genuine Relevance of the Data-Driven Signal Decomposition-Based Multiscale Permutation Entropy
Article
On the Genuine Relevance of the Data-Driven Signal
Decomposition-Based Multiscale Permutation Entropy
Meryem Jabloun *, Philippe Ravier and Olivier Buttelli
Abstract: Ordinal pattern-based approaches have great potential to capture intrinsic structures of
dynamical systems, and therefore, they continue to be developed in various research fields. Among
these, the permutation entropy (PE), defined as the Shannon entropy of ordinal probabilities, is an
attractive time series complexity measure. Several multiscale variants (MPE) have been proposed in
order to bring out hidden structures at different time scales. Multiscaling is achieved by combining
linear or nonlinear preprocessing with PE calculation. However, the impact of such a preprocessing
on the PE values is not fully characterized. In a previous study, we have theoretically decoupled the
contribution of specific signal models to the PE values from that induced by the inner correlations
of linear preprocessing filters. A variety of linear filters such as the autoregressive moving average
(ARMA), Butterworth, and Chebyshev were tested. The current work is an extension to nonlinear
preprocessing and especially to data-driven signal decomposition-based MPE. The empirical mode
decomposition, variational mode decomposition, singular spectrum analysis-based decomposition
and empirical wavelet transform are considered. We identify possible pitfalls in the interpretation
of PE values induced by these nonlinear preprocessing, and hence, we contribute to improving the
PE interpretation. The simulated dataset of representative processes such as white Gaussian noise,
Citation: Jabloun, M.; Ravier, P.;
fractional Gaussian processes, ARMA models and synthetic sEMG signals as well as real-life sEMG
Butelli, O. On the Genuine Relevance signals are tested.
of the Data-Driven Signal
Decomposition-Based Multiscale Keywords: time series; multiscale permutation entropy; data-driven decomposition; nonlinear
Permutation Entropy. Entropy 2022, filtering; electromyography
24, 1343. https://doi.org/
10.3390/e24101343
for d = 4). The PE robustness to ectopic or aberrant values and to moderate noise level is
well established [60–62].
and ρ xx (τ ) denotes the normalized auto-correlation function (ACF) of the real time series
xt defined as:
E [ xt xt+τ ]
ρ xx (τ ) = ρ xxτ = (6)
E[ xt2 ]
for τ = − N + 1, − N + 2, . . . , N − 1. Note that ρ xxτ is symmetric and that both (4) and (5)
only depend on the values of ρ xx1 , ρ xx2 and ρ xx3 .
Thus, knowing these three point values of the ACF of any stationary Gaussian signal
is sufficient to access to its corresponding theoretical PE value.
Among the stationary Gaussian processes considered in [2,60,62], there are
Entropy 2022, 24, 1343 4 of 17
q
• Moving average processes MA(q) defined by xt = ∑`=0 a` et−` with a0 = 1, and et is a
unitary centered Gaussian noise. Its ACF is evaluated using the following expression:
q
∑`=τ a` a`−τ
q if |τ | ≤ q,
ρ xxτ = ∑ a2 (9)
0 `=0 ` otherwise.
where h ∈]0, 1[is referred to as the Hurst exponent [55]. Recall that for h = 0.5, the fGn
reduces to a white Gaussian noise with equal probabilities for the d! order patterns of
dimension d and hence a permutation entropy H = 1.
• Synthetic sEMG signals simulated as Gaussian processes, whose power spectral
density (PSD) is modeled according to [65] by:
f h4 ν2
PSD (ν) = k 2 (11)
ν2 + f l2 ν2 + f h2
where k is a normalization constant and f l and f h are the normalized low and high
cut-off frequencies of the sEMG PSD model. Its ACF expression was derived in [27]:
f h2 + f l2 −2π f |τ |
2 fh −2π f l |τ | 2 2 −2π f h |τ |
ρ xxτ = − f l e + e h + π ( f h − f l ) | τ | e . (12)
( f h − f l )2 2 fh
• Correlated Gaussian processes defined as the output of a linear filter whose input is a
white Gaussian noise. Such processes can be encountered in studies limited to one
specific or useful bandwidth as it is the case in [66]. The ACF of such processes is
directly linked to the ACF of the used linear filter as described in [27]. For example,
an ideal band-pass filter of a normalized bandwidth is equal to BW = [νl , ν f ], whose
transfer function is defined as:
1 if ν ∈ [νl , νh ],
HF (ν) = , (13)
0 otherwise
with 0 ≤ νl < νh < 0.5 and ν is the normalized frequency, which leads to an ACF of
the filter output signal as follows:
ρ xxτ = cos π (νh + νl )τ sinc π (νh − νl )τ . (14)
Entropy 2022, 24, 1343 5 of 17
Note that by setting νl = 0, we have the ACF of the output signal of ideal low-pass
filters. Another example, a Gaussian filter whose transfer function is defined by
HF (ν) = exp −2πν2 σ2 (15)
−τ 2
ρ xxτ = exp . (16)
2σ2
When the sampling frequency Fs tends to be very high in comparison to the signal frequency
f 0 , i.e., νp ≈ 0, the PE H reaches the theoretical PE of a continuous time series H = 0.387 and
H = 0.218 for d = 3 and d = 4, respectively [67]. It turns out that the PE value H = 0.387
is also that obtained for d = 3 when the sampling frequency is equal to the Nyquist rate
Fs = 2 f 0 . Indeed, in this last case, only two equiprobable patterns are available.
Now, let us consider a sum of two sinusoidal signals xt = cos(2πν0 t) + ar cos(2π f r ν0 t +
φ), where parameters ar and f r are the amplitude and frequency ratios of the two consid-
ered components, and φ is a uniform random phase identically distributed on [−π, π ].
The average of this signal PE, < H > φ , with respect to φ is a function of the parameters ar
and f r as shown in Figure 1a,b, where f 0 = 1 Hz and Fs = 20 Hz. The dark area corresponds
to a PE close to that of the dominant component cos(2πν0 t) and equal to 0.581 and 0.441
for d = 3 and d = 4, respectively.
1 1
0.6
0.9 0.9
0.46
fr
0.5 0.5
0.54 0.4
0.4 0.4
0.38
0.3 0.52 0.3
0 0
-2 -1.5 -1 -0.5 0 0.5 1 1.5 2 -2 -1.5 -1 -0.5 0 0.5 1 1.5 2
log a r log a r
(a) (b)
Figure 1. PE values of the sum of two sinusoidal signals xt = cos(2πν0 t) + ar cos(2π f r ν0 t + φ)
as a function of the parameters ar and f r . The signal is noise free, and the sampling frequency is
Fs = 20 Hz. (a) d = 3; (b) d = 4.
Note that this area edge and the PE values are sensitive to the chosen sampling
frequency [67] and to the signal-to-noise ratio (SNR), as illustrated in Figure 2a,b.
Entropy 2022, 24, 1343 6 of 17
1 1
0.8 0.8
0.58 0.58
0.7 0.7
fr
fr
0.5 0.5
0.3 0.3
0.52 0.52
0.2 0.2
0 0
-2 -1.5 -1 -0.5 0 0.5 1 1.5 2 -2 -1.5 -1 -0.5 0 0.5 1 1.5 2
log a r log a r
(a) (b)
Figure 2. PE values of the sum of two sinusoids (17) as a function of the parameters ar and f r : PE
values are dependent of the sampling frequency and the SNR. (a) d = 3, Fs = 40 Hz and SNR=∞;
(b) d = 3, Fs = 20 Hz and SNR = 20 dB.
to be sensitive to noise, sampling frequency and mode mixing of signal components with
close frequencies. Other considerations or/and modifications of the original EMD have also
been proposed to overcome the EMD limitations [70–72]. In our study, we use the EMD
implementation proposed in [70] where a Cauchy-type stop criterion is considered in order
to relax the original IMF definition and to extract AM-FM modes with physical significance.
The VMD proposed in [73] is a non-recursive signal decomposition method that breaks
down the signal into a small number of narrow-band IMFs well adapted to Hilbert trans-
form. Unlike EMD, the VMD has a consolidated mathematical theory, since the IMFs and
their respective center frequencies are extracted concurrently by optimizing a constrained
variational problem. All IMFs obtained are amplitude and frequency-modulated (AM-
FM) cosine waveforms whose instantaneous frequencies vary slowly in a non-decreasing
pattern. The VMD exhibits interesting performances compared to the EMD, such as the
attenuation of the mixing mode and the improvement of the noise robustness. The VMD
behavior as a filter bank was investigated in [74]. In order to increase the performance of
the VMD, improved versions of the VMD were also proposed [75–77].
The empirical wavelet transform (EWT) proposed in [78] is a data-driven decom-
position method that extracts different oscillatory modes from a signal by designing an
adaptive wavelet filter bank. The upper and lower passband cut-off frequencies of the
wavelet filters are automatically selected as the midpoint of two adjacent local maxima
of the Fourier spectrum of the signal. The extracted modes are narrow time-frequency
sub-bands. As with VMD, the EWT has a theoretical basis. It also combines the advantages
of EMD and the wavelet transform. Further refinements of EWT have also been proposed
in [79–81] to improve the performance of EWT.
Singular spectrum analysis (SSA), introduced in [82] and featuring an unsupervised
classification algorithm, is also a data-driven decomposition method, but it differs in
that its theoretical basis is close to that of the principal component analysis. SSA is able
to identify principal processes and hidden periodicities. The components extracted are
physically significant and correspond either to orthogonal oscillatory components with a
narrow spectral band (periodic or quasi-periodic components), trends or noise. Various
improvements to the original SSA have also been proposed to overcome the redundancy of
the original SSA decomposition and to take into account the possibility of a time-varying
number of components [83,84].
Despite the widely proven usefulness of the permutation entropy combined with these
data-driven decomposition-based techniques, there is still a need to understand the impact
of such a preprocessing on the MPE values and how this impact can significantly alter the
interpretation of the MPE results.
to compute the normalized center frequency of each component for comparison purposes.
This can be achieved using a PSD estimation, PSD (ν), of the IMF:
Z
νc = ν PSD (ν) dν. (20)
Figure 3 shows a comparison of the PE obtained from simulations. For all considered
methods, the results are presented in two ways. The first one is the classical one: PE as a
function of the extraction rank of the components. In the second way, PE is presented as a
function of the normalized center frequency of the IMFs.
d=3 d=3
0.9 0.9
0.8 0.8
PE
PE
EMD
SSA VMD
0.6 0.6
EWT
SSA
0.5 0.5
0.4 0.4
(a) (b)
d=4 d=4
0.9 0.9
0.8 0.8
0.7 0.7
0.6 0.6
EMD
0.5 VMD 0.5
PE
PE
EWT
SSA
0.4 0.4
EMD
VMD
EWT
SSA
0.3 0.3
(c) (d)
Figure 3. Impact of nonlinear preprocessing on the MPE values of white Gaussian noise: EMD, VMD,
EWT or SSA decomposition precedes the calculation of PE with a pattern dimension d = 3 and d = 4.
(a,c) PE as a function of the extraction rank of the components in contrast to (b,d) PE as a function of
the center frequency of each extracted mode. The average results of 100 simulated time series are
depicted. At least 8 components are extracted by each method.
As can be seen in Figure 3a,c, the four methods considered seem to act differently on
the PE, but looking at Figure 3b,d, the variation and decrease of the PE with respect to
the center frequency of extracted components seem to be similar for almost all methods.
The results are very close especially for the components extracted at high or moderate
frequencies with VMD and EWT preprocessing methods. The SSA method sticks to a
single spectral band, and the first 25 extracted components all share the same narrow band.
The lowest number of extracted components is obtained by EMD, but it covers a larger
spectral range.
Note that these obtained results remain valid even if the uncorrelated noise is not
Gaussian but uniformly distributed.
Next, to further investigate the impact on the MPE and to obtain an idea of the
reliability of these results, we present a theoretical approximation of the EMD and VMD-
based MPE. To this end, recall that both the EMD and VMD act as a filter bank but in two
Entropy 2022, 24, 1343 9 of 17
distinct ways [69,74]. Figure 4a,d illustrates this filter-bank aspect where the DSPs of the
first eight IMFs extracted from Gaussian noise are depicted. We propose to approximate
their normalized PSD by Gaussian curves:
From this point, each IMF can be viewed as the output of a linear filter whose input is
white Gaussian noise and transfer function is the square root of the expected spectra (21).
An approximation of the normalized ACF is then given by (16), and an approximation
of the theoretical PE of the IMF can be obtained using (3). The theoretical PE obtained
are shown in Figure 4b,e for a pattern dimension d = 3 and in Figure 4c,f for a pattern
dimension d = 4. As shown in these figures, the theoretical and experimental PE appear to
have a close shape, especially at high and moderate center frequencies. At very low center
frequencies, the Gaussian approximation of the PSD IMF may no longer be valid, leading
to a divergence between the experimental and theoretical PE.
d=3 d=4
1 1
1
0.9 0.9
0.9 0.8 0.8
PE
0.5
0.4 0.4
0.4
simulated PE
0.3
0.3 Approx. theor. PE 0.3 simulated PE
0.2 Approx. theor. PE
0.1
0 0.2 0.2
0 0.05 0.1 0.15 0.2 0.25 0.3 0.35 0.4 0.45 0.5 10-2 10-1 10-2 10-1
Normalized frequency Center frequency Center frequency
PE
0.5
0.6 0.6
0.4
0.3
0.5 0.5
0.2
0.1
0 0.4 0.4
0 0.05 0.1 0.15 0.2 0.25 0.3 0.35 0.4 0.45 0.5 10-2 10-1 10-2 10-1
Normalized frequency Center frequency Center frequency
non-sensitive to the Hurst exponent, but the actually calculated PE values that are indicated
by the (o) marker are, however, sensitive to a frequency shift.
d=3 d=3
1
fGn Hurst expon.=0.5
0.9 0.9
fGn Hurst expon.=0.9
0.8 fGn Hurst expon.=0.1 0.8
0.7 0.7
PE
PE
0.6
0.6
0.5
0.5 fGn Hurst expon.=0.5
fGn Hurst expon.=0.9
fGn Hurst expon.=0.1
0.4
0.4
1 2 3 4 5 6 7 8 10-2 10-1
Component extraction rank Center frequency
0.95
0.9
0.9
0.8
0.85
0.8 0.7
PE
PE
0.75
0.6
d=3
1 0.5
0.9 0.45
0.4
0.8
0.35
fc of fGn IMFs
0.7 0.3
identity
PE
0.4 0
0 0.05 0.1 0.15 0.2 0.25 0.3 0.35 0.4 0.45 0.5
10-2 10-1
Center frequency fc of AWGN IMFs
(a) (b)
Figure 6. Impact of the EMD preprocessing on the PE values of white Gaussian noise (-o) versus
fractional Gaussian processes: (a) PE of a pattern dimension d = 3 and Hurst exponent varying
from 0.1 to 0.9 in 0.1 steps. (b) Average of center frequencies of fGn IMFs versus average of center
frequencies of AWGN IMFs. A total of 100 times series are simulated for each Hurst exponent.
H f Gn = H (αh νc ), where αh is a slope that depends on the Hurst exponent. These slopes are
actually depicted in Figure 6b where we can see the linear relationship between normalized
center frequencies of the fGn IMFs and those of AWGN IMFs.
d=3 d=3
1 1
simulated PE - AWGN PE - AWGN
0.9 0.9
Approx. th. PE - AWGN PE - AR(2)
0.8 simulated PE - AR(2) 0.8 PE - Butter. filt. AWGN
Approx. th. PE - AR(2) PE - Butter. filt. AR(2)
0.7 0.7
PE
PE
0.6 0.6
0.5 0.5
0.4 0.4
0.9 0.9
simulated PE - AWGN
Approx. th. PE - AWGN
0.8 0.8 simulated PE - MA(2)
Approx. th. PE - MA(2)
0.7 0.7
PE
PE
0.6 0.6
0.9
0.8
0.7
PE
0.6
Figure 7. Impact of EMD decomposition on the PE values of signal models. (a) EMD-based MPE of
AR(2) processes (-∆ ) versus white Gaussian noise(-o): experimental PE (solid line) versus theoretical
PE approximation (dashed line). (b) EMD-based MPEs of both AR(2) model and AWGN superim-
posed to linear preprocessing-based MPE: 9th order Butterworth filter. (c) EMD-based MPE of AR(7)
during rest and tilt positions: EMD-based MPE of AR(2) model (-∆ ) versus white Gaussian noise(-o):
experimental PE (solid line) versus theoretical PE approximation (dashed line). (d) same as (a) but
with MA(2) processes. (e) EMD-based MPE applied to two sEMG models (11).
Entropy 2022, 24, 1343 13 of 17
fr
fr
fr
0.5 -4 0.5 0.5 0.5
-10
1
0.4 0.4 0.4 0.4 -6
-6
0.3 0.3 0.3 0.3
0.5 -15
-8
-8
0.2 0.2 0.2 0.2
0
0.1 0.1 0.1 0.1 -10
-10 -20
0 0 0 0
-2 -1.5 -1 -0.5 0 0.5 1 1.5 2 -2 -1.5 -1 -0.5 0 0.5 1 1.5 2 -2 -1.5 -1 -0.5 0 0.5 1 1.5 2 -2 -1.5 -1 -0.5 0 0.5 1 1.5 2
log ar log ar log ar log ar
Figure 8. Impact of the data-driven decomposition on the PE values of a sum of two sinusoidal signals:
the relative error between theoretical PE (17) in percent and computed PE of pattern dimension d = 3
of the first component obtained after (a) EMD, (b) VMD, (c) EWT and (d) SSA decomposition.
1 200
0.9
IMF PE of AWGN 0.9 180
IMF PE of sEMG 20% IMF PE of AWGN
0.8 160
0.8 IMF PE of sEMG 80% IMF PE of sEMG 20%
0.7 IMF PE of sEMG 80% 140
0.7
120
Delta fc
0.6
PE
PE
0.6 100
0.5
80
0.5 60 fc 20%
0.4 fc 80%
40
0.4 20
0.3 0
1 2 3 4 5 6 7 8 100 101 102 103 0 100 200 300 400 500 600 700
250
0.7
0.5
200 fc 20%
0.65
150
fc 80%
0.6 IMF PE of AWGN 0.4 IMF PE of AWGN
100
IMF PE of sEMG 20% IMF PE of sEMG 20%
0.55 IMF PE of sEMG 80% IMF PE of sEMG 80% 50
0.3 0
1 2 3 4 5 6 7 8 100 101 102 103 0 100 200 300 400 500 600 700
Figure 9. Impact of EMD and VMD decomposition on the PE values of real-life sEMG signals versus
AWGN: (a,c) IMF PE of a pattern dimension d = 3 as a function of IMF extraction rank. (b,d) IMF PE
of a pattern dimension d = 3 as a function of center frequencies of extracted IMFs. Center frequencies
of extracted IMFs from sEMG signals versus those of AWGN.
4. Discussion
The data-driven decomposition-based methods we considered extract components
with different frequency panels. When applied to AWGN or to correlated processes with
different signal models (AR, MA, simulated sEMG), all the considered methods behaved
almost identically to a white Gaussian noise with respect to the center frequencies of the
extracted components. Indeed, the PE values of extracted components are located on the
same curve used as a benchmark whatever the model and for each of the data-driven
decomposition methods used. However, the actually calculated PE values which are of
the same number of extracted IMFs seem to be shifted frequency with respect to those
of AWGN.
Entropy 2022, 24, 1343 14 of 17
Unlike linear preprocessing MPE, it can be concluded that the variation in the data-
driven decomposition-based MPE may mainly reflect the frequency shift (frequency band-
width of extracted components) of components more than a concrete complexity variation
related to the signal model. The obtained results suggest that the PE decay or variation
should not be interpreted from the perspective of rank of the extracted component but
rather from the perspective of their frequency location. These decay and variation are
sensitive to the frequency shift of extracted components.
5. Conclusions
We need to accurately outline the impact of nonlinear preprocessing in the PE and
identify its contribution to PE from the information content of signal models. In this work,
we found that data-driven decomposition-based MPE should be analyzed and interpreted
based on the center frequency of the extracted components rather than their extraction rank.
Unlike the linear filtering-based MPE, the variations of these data-driven decomposition-
based MPE mainly reflect the frequency shift of the bandwidth of each IMF more than the
contribution of the signal model. This work allows us to correctly interpret the PE values
over an arbitrary time series. Future research directions may also involve highlighting the
impact in special cases such as existing persistent forbidden patterns. This is a topic for
future research to explore.
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