Nota Chapter 2 SDS Sem 1 2024
Nota Chapter 2 SDS Sem 1 2024
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SELF LEARNING MODULE SEM I SESSION 2024/ 2025
LEARNING OUTCOMES:
a) State the three principals of cell theory. (CLO 1)
b) Explain structures of prokaryotic and eukaryotic cells. (CLO 2)
c) Illustrate and compare the structures of prokaryotic and eukaryotic cells (plant
and animal cells) (CLO 2)
i. The cell is the basic structural and functional unit of every organism.
ii. The cell derived from other cells by division.
iii. The cell contains hereditary information (DNA) which controls their activities
(example for growth, development and cell functioning) and passed from cell to
daughter cell during cell division.
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• Prokaryotic cells lacking true nucleus (they do not have membrane bounded
nucleus).
• Prokaryotic DNA is circular. DNA is not associated with histone protein; it is not
formed into chromosomes.
• DNA was located in an unbound region called the nucleoid.
• Prokaryotic cells also do not have membrane-enclosed organelles such as
mitochondria, endoplasmic reticulum, Golgi body/apparatus, vacuoles and
lysosomes.
• Prokaryotes reproduce asexually generally by binary fission without spindle
formation, a process in which one cell divides into two similar cells.
• The ribosomes are composed of a 50S large subunit and 30S small subunit
forming a 70S ribosome. (S = Svedberg unit)
• Some prokaryotes are photoautotroph even though do not have chloroplast.
Photosynthesis (certain bacteria) usually takes place in infolding or extensions
derived from the plasma membrane.
• The mesosomes is inward fold (finger like projection) of the cell plasma
membrane for cellular respiration.
Figure 2.1.2: Mesosomes, infolding of plasma membrane where cellular respiration take place
and infolding of plasma membrane for photosynthesis
• Some bacteria may have other small rings of DNA that carrying a few genes
called plasmid that replicate separately from the bacterial circular DNA.
• Most bacteria have a rigid cell wall outside the plasma membrane which
contain peptidoglycan. It provides support and maintain the cell shape, protects
the cells and prevents it from bursting in a hypotonic environment.
• Some bacteria have flagellum (plural; flagella) for locomotion that made up of
flagellin, simple microtubule without 9+2 microtubule pattern.
• Some prokaryotes stick to their substrate or to another by hairlike appendages
called fimbriae (singular, fimbria).
• Sex pili are longer than fimbriae and allow prokaryotes to exchange DNA during
conjugation.
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• The cell wall of many prokaryotes is surrounded by a dense and well define sticky
layer of polysaccharide or protein known as capsule. But known as slime layer if
it is not well organized. The function is to protect against dehydration and some
capsule shield pathogenic prokaryote from attack by their host’s immune
system.
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• DNA in prokaryotic cell is single circular DNA and not associated with histone
protein while DNA in eukaryotic cell is several to many linear DNA that associated
with histone protein.
• Typical prokaryotic cell contain plasmid while eukaryotic cell the plasmid is
absent.
• Prokaryotic cells reproduce by binary fission while eukaryotic cell can reproduce
both asexually through mitosis and sexually through meiosis and fusion of
gamete.
• Some prokaryotic cells have enzymes that can fix atmospheric nitrogen for use
in amino acid synthesis during nitrogen fixation while eukaryotic cells do not
contain enzymes that can fix atmospheric nitrogen.
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SELF LEARNING MODULE SEM I SESSION 2024/ 2025
LEARNING OUTCOME S:
a) State the structures and functions of the following organelles: nucleus, rough
endoplasmic reticulum, smooth endoplasmic reticulum, Golgi body, lysosome,
ribosome, mitochondria, chloroplast and centriole. (CLO 1)
b) Explain the structures and functions of endomembrane system which includes
nuclear envelope, rough endoplasmic reticulum, smooth endoplasmic
reticulum, Golgi apparatus, vesicle and vacuoles and the plasma membrane.
(CLO 2)
c) Show the structure of plasma membrane based on Fluid Mosaic Model (CLO 1)
d) Explain the structure of the plasma membrane and the functions of each of its
components. (CLO 2)
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SELF LEARNING MODULE SEM I SESSION 2024/ 2025
NUCLEUS
Functions:
• Nucleus acts as the centre to control the activities of the cell and cell
division.
• Nucleolus play role in controlling cell division and life span of the cell
• Nucleolus involved in the production of ribosomes (rRNA).
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• DNA is organized into genes, which are templates used in protein synthesis.
• The pores control the exchange of material between the nucleus and the
cytoplasm.
• Production of mRNA occur in nucleus.
ENDOPLASMIC RETICULUM
Structures:
• Studded with ribosome on the outer surface of the membrane and does
appear rough through the electron microscope.
• The rough endoplasmic reticulum consists of an interconnected system of
membrane-bound flattened sacs called cisternae.
Functions:
• To package and intracellular transport proteins made by the ribosomes.
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Functions:
• Synthesis of lipid
• Metabolisme of carbohydrate in liver cell
• Detoxifies drugs and poisons in liver cell
• Modified into sarcoplasmic reticulum to stores calcium ions which are
necessary for muscles contraction.
GOLGI BODY
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Structures:
• Single membrane-bounded organelle that consists of a stack of associated,
flattened membrane-bound sacs called cisternae.
• Each stack contains about 4 – 7 cisternae.
• Golgi body has two faces, the cis face and the trans face.
• The cis face is located near the endoplasmic reticulum and is the receiving
side of the Golgi body.
• The trans face is located near to the cell surface membrane.
• The trans face give rise to vesicle that pinch off and travel to other site
Functions:
• The main functions of the Golgi body are to modify, sort, stores and ship
(transport) cell products.
• Transporting and storing lipids.
• Forming lysosomes containing hydrolytic enzymes.
• Production of digestive enzymes.
• In plant cells, secretion of polysaccharides to form cell plates and cell walls.
LYSOSOME
Structures:
• Small vesicle rise from budding of trans face of Golgi body
• Single membrane-bounded organelle which contains a variety of active
hydrolytic enzymes that can digest macromolecules within the cell.
Functions
• Autophagy – lysosome fused with the vesicle with damage organelle and
release the hydrolytic enzymes to digest the organelle and their component
are recycled.
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• Release enzymes to the outside of the cell by exocytosis to digest other cells
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RIBOSOME
Functions:
• Sites of protein synthesis in the cell.
• Most of the proteins made on free ribosomes function within cytosol while
bound ribosomes generally make protein that are destined for insertion into
membrane, for packaging within certain organelles such as lysosomes or for
export from the cell (secretion).
MITOCHONDRIA
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Structures:
• Rod-shaped structures that vary in size and shape.
• Have their own DNA.
• Two membranes enclosing mitochondria is a phospholipid bilayer with a
unique collection embedded protein
• The outer membrane is smooth
• The inner membrane is convoluted with infolding called cristae.
• The highly folded cristae increase the surface area for the Electron Transport
Chain (ETC) reactions.
• Intermembrane space is the narrow region between outer and inner
membrane.
• The inner membrane encloses the mitochondrial matrix, a fluid-filled space
with DNA, ribosomes and enzymes.
Functions:
• Site of cellular respiration
CHLOROPLAST
Structures:
• Lenses-shape, size about 3-6 µm in length.
• Enclosed by a double membrane separated by a narrow inter membrane
space.
• Innermost membrane is a fluid-filled space, the stroma.
• A series of interconnecting flattened membrane-bounded sacs, the
thylakoids, are found in the stroma.
• Thylakoid are stack into granum (plural, grana)
• Stroma contains DNA, ribosomes, and enzymes for part of photosynthesis.
Functions:
• Site of photosynthesis.
• Store starch (starch granule)
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CENTRIOLE
Functions:
• Assist in microtubule arrangement to form spindle fibres and are involved in
the separation of chromosomes/ chromatids during cell division.
• Form the basal body in the formation of clia and flagella in moving cells.
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• Lysosomes are formed by the fusion of vesicles that have budded off from the
trans face of Golgi apparatus.
• Vacuoles are large vesicles derived from the endoplasmic reticulum and Golgi
apparatus. For example, food vacuole, contractile vacuole and central
vacuole of plant cell.
• In 1972, S.J. Singer and G.L. Nicolson proposed the Fluid Mosaic Model.
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Functions:
• Transport: A protein that spans the membrane may provide a hydrophilic
channel across the membrane that is selective for a particular solute.
• Enzymatic activity: Some membrane proteins act as enzyme that ordered as
a team that carries out sequential steps in metabolic pathway.
• Signal transduction: A membrane protein may have a binding site with
specific shape of a chemical messenger, such as a hormone.
• Intercellular joining: Membrane proteins of adjacent cell may be hooked
together in various kinds of junction such as tight junction and gap junction.
• Cell – cell recognition: some glycoprotein serve as identification tags that are
specifically recognized by other cells.
• Attachment to the cytoskeleton and extracellular matrix (ECM): helps
maintain cell shape and fixes the location of certain membrane proteins.
STRUCTURE: CARBOHYDRATE
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Functions:
• Glycoprotein: “self” recognition - serve as identification tags that are
specifically recognized by other cells (cell – cell recognition), protection
and the immune response,and cell adhesion. Ex: Major histocompatibility
complex protein recognized by immune system
• Glycolipid: Tissue recognition - Cell recognition and provide stability and
help cells join to other cells to form tissues. Ex: A, B, O blood group markers
STRUCTURE: CHOLESTEROL
Functions:
• Maintain fluidity of membrane at different temperature.
• At moderate temperature, it reduces membrane fluidity by reducing
phospholipid movements, but at low temperature, it prevents solidification of
phospholipids by disrupting the regular packing of phospholipid. (Campbell
12th, page 198)
*Plant have very low level of cholesterol; rather related steroid lipids buffer
membrane fluidity in plant cell (Campbell 12th, page 198)
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SELF LEARNING MODULE SEM I SESSION 2024/ 2025
LEARNING OUTCOMES:
a) Describe animal tissues and plant tissues. (CLO 1)
b) Explain the following types of cells and tissues: (CLO 2)
i. Animal cells and tissues:
Epithelial cells (simple squamous, simple cuboidal, simple columnar, stratified
squamous), nerve cell (motor neuron), muscle cells (smooth, striated and
cardiac muscle), connective tissues (compact bone, hyaline cartilage and
blood)
ii. Plant cells and tissues:
Meristem, parenchyma, collenchyma, sclerenchyma, xylem and phloem.
• Cells as basic units of living organisms are grouped into tissues and organs.
• Cells in multicellular organisms do not function in isolation.
• Groups of cells of the same type (performing similar functions) form tissues and
act as a unit.
• An organ consists of several types of tissues that work together to perform
specific functions.
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EPITHELIAL TISSUES
• Cover the outside of the body and line organs and cavities within the body.
• Epithelial cells are closely packed, often with tight junction, they function as
a barrier againts mechanical injury, pathogens and fluid loss.
• Based on number of cell layers, epithelial tissue can be divide into simple
and stratified while based on cell shape it can be divide into squamous,
cuboidal and columnar.
Function:
• Exchange of gaseous and nutrient
across the membrane by diffusion.
Distributions:
• Lining of salivary glands,
pancreatic duct, thyroid gland,
kidney tubules.
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Distributions:
• Lining of digestive tract, small
intestine, upper respiratory tract
and oviducts.
Functions:
Figure 2.3.4: Simple columnar • Absorption of nutrient and
secretion.
• Protection - The secreted mucus
serves as a lubricant for the linings
of the digestive and upper
respiratory tracts.
• Provides mechanical support
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Functions:
• Resists abrasion and mechanical
damages.
• Acts as a barrier (prevent water
loss through skin).
NERVOUS TISSUE
Structures:
• The functional unit of nervous tissue is the nerve cell called neuron.
• Each neuron is composed of 3 main parts:
o Cell body - contains nucleus and most of the neuron organelles.
o Dendrites - Highly branched extention studded of the cell body.
o Axon – an extention that transmit signal to the other cell and much
longer than dendrites. Contain axoplasm surrounded by plasma
membrane (axolemma)
• Three types of neurons:
o Afferent (sensory neurons)
o Efferent (motor neurons)
o Interneuron/ Intermediary (relay neurons)
• Myelin sheath – wrap around axon of the neuron and insulating coat of cell
membrane from Schwann cell or oligodendrocytes.
• Nodes of Ranvier – gap in myelin sheath of certain axon where an action
potential may be generated.
Distributions:
• Brain and spinal cord.
Functions:
• Motor neuron - Conduct impulses out of central nervous system toward
muscles and glands (effector).
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MUSCLE TISSUES
Distributions:
• Lining the walls of arteries and
Figure 2.3.7: Smooth muscle veins, the digestive tract, the
urinary bladder, the stomach and
the uterus.
Function:
• Responsible for involuntary
movement of the body.
• Contraction slower than skeletal
muscle but their energy efficient
(can contract for long period
without fatigue)
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Distribution:
• Attached to bones by tendons
Function:
• Responsible for voluntary
movement of the body.
• Powerful, rapid contractions (not
sustained)
Distribution:
• Lining at the wall of heart.
Function:
• Responsible for involuntary
movement of the heart by form
continuous, rhythmic
contractions and allow heart
pump blood throughout the
body.
• Myogenic – able to initiate
contraction without stimulation
from nerve
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CONNECTIVE TISSUE
Distribution:
• Skeleton
Function:
• Give body shape and provide
framework for support.
• Protect the internal organs
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Distributions:
• Trachea and bronchi.
• It forms the embryonic skeleton in
many bony vertebrates.
Figure 2.3.11: Hyaline cartilage • It covers the end of bones and
reduces friction between joints
during movement.
• It forms the skeleton of
cartilaginous fish rays.
Function:
• Give flexible support.
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B LOOD
• Blood has a liquid extracellular matrix called plasma
• Plasma consists of 90% water & 10% of a variety of substances in suspension
or dissolved in solution.
• Suspended in plasma are erythrocytes (red blood cells), leukocytes (white
blood cells) and cell fragments called platelets.
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MERISTEM TISSUES
APICAL MERISTEM
Structures:
• Consist of shoot apical meristem and root apical meristem.
• When they divide, some daughter cells remain in the apical meristem,
ensuring continuing population of undifferentiated cells.
Distributions:
• Root and shoot tips
Functions:
• Involve in primary growth, growth in length.
• Primary growth allows roots to extend throughout the soil and shoot to
increase exposure to light.
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LATERAL MERISTEM
Structures:
• 2 types, vascular cambium and cork cambium
• Cylinders of dividing cells that are one cell thick
Distribution:
• Vascular cambium extend along the length of roots and stems within
vascular bundle between xylem and phloem.
• Cork cambium found in the bark of root and stems of woody plant.
Function:
• Involve in secondary growth
• Vascular cambium add vascular tissue called secondary xylem and
secondary phloem.
• Cork cambium replaced the epidermis with the thicker, tougher periderm.
GROUND TISSUES
• Tissues that are neither dermal nor vascular are part of the ground tissue
system.
• Ground tissue that is internal to the vascular tissue is known as pith.
• Ground tissue that is external to the vascular tissue is known as cortex.
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PARENCHYMA TISSUE
Structures:
• Consist of unspecialized living cells, with nucleus present in the cells.
• Usually isodiametric or elongated cells.
• When mature, have a large central vacuole with the cytoplasm pushed to
the cell periphery.
• Have primary cell walls that are thin and flexible and most lack secondary
walls.
• Cell wall containing cellulose, hemicellulose and pectin.
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Distributions:
• Cortex and pith of stem.
Functions:
• Perform most of the metabolic functions of plants, synthesizing and storing
various organic products.
• Retain the ability to divide and differentiate into other types of plants cell
under particular condition.
• Large intercellular air space for gaseous exchange.
• Contain chloroplast for photosynthesis
• Form secondary tissue such as cambium.
• Support in herbaceous plant
COLLENCHYMA TISSUES
Structures:
• Nucleus present, consist of living cells at maturity.
• Polygon-shaped and elongated.
• Cells are closely packed together with very small or no intercellular spaces.
• Have unevenly thickened primary cell wall with deposits of cellulose,
pectin and hemicellulose
• The thickenings usually occur at the corners of the cell walls.
• Pits are present between cell wall
Distributions:
• Along midrib of leaves. Just under stem epidermis.
• Below the epidermis in the outer region of the cortex and gradually merges
into parenchyma towards inside.
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Functions:
• Giving mechanical strength and flexibility.
• Elastic support.
• To provide supporting tissue for the herbaceous plants (non woody plants).
SCLERENCHYMA TISSUE
Distributions:
• Xylem and phloem
• Cortex below the epidermis of stems and roots.
Functions:
• Provide strength and mechanical support to woody plants.
• Sclereids and fibers are non-conducting tissues that add hardness or
rigidity to tissues
• Sclereids are responsible for the hardness of seeds and shell of walnut
• Starch granules are stored in the young, living fiber cells.
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Fibers
• Characteristics
o Elongated & polygonal
o Dead cell
o Thick wall with small lumen
• Distributions
o Outer region of cortex, pericycle of stems,
xylem & phloem
• Function in providing mechanical support
Sclereid
• Characteristics
✓ Shorter than fibers and irregular in shape,
impart the hardness to nutshells.
✓ Dead cell
• Distributions
✓ distributed in a variety of tissues but
particularly in stems, leaves and fruits /
seeds.
• Function in providing support & mechanical
protection
VASCULAR TISSUE
• Vascular tissue system are to facilitate the transport materials through the plant
and to provide mechanical support.
• Two types of vascular tissue are xylem and phloem.
• The vascular tissue of a root or stem is collectively called the stele.
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• In angiosperm, the root stele is a solid central vascular cylinder of xylem and
phloem whereas the stele of stem and leaves consist of vascular bundles,
separate strand containing xylem and phloem.
XYLEM
Structures:
• Consist of two cell type: tracheids and vessel element
• Tubular, elongated cell that are dead and lignified at functional maturity
i. Tracheids
o Long, thin, tapered cells having lignin-hardened secondary wall with
pits
o All vascular plants possess tracheids.
o Water flow from cell to cell through pits (water transport) and also
function in mechanical support.
Functions:
• Function in transporting water and dissolved mineral salts to the upper part of
the plant.
• Mechanical support
PHLOEM
Structures:
• Consist of two cell type: Sieve tube elements and Companion cells
• Alive at maturity, but usually with a much reduced cell contents and no
nucleus.
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Functions:
• Specialized to transport organic substances from leaves to storage organs
and growing parts of plant body.
LEARNING OUTCOMES:
a) Overview the various transport mechanisms across the membrane. (CLO 1)
b) Explain the various transport mechanisms across the membrane. (CLO 2)
iii. Passive transport: simple diffusion, facilitated diffusion and osmosis
iv. Active transport: Sodium – potassium pump and
v. Bulk transport: endocytosis and exocytosis
Simple diffusion
Osmosis
Transport mechanism across
membrane Sodium - Potassium
Active transport
pump
Endocytosis
Bulk transport
Exocytosis
• Movement of molecule, ion and atoms across cell membrane from a region of
higher concentration of substances to a region of lower concentration of
substances.
• The process does not require energy.
• Occur in both living and non-living organisms.
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SIMPLE DIFFUSION
Definition:
• The random movement of solute /the substances (molecule, ion and atoms)
from a region of higher concentration to a region of lower concentration.
• Through selectively permeable membrane until equilibrium is achieved
• Does not require energy.
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FACILITATED DIFFUSION
Definition:
• Movement of ions or polar molecules from a region of higher concentration
to a region of lower concentration
• with the help of transport protein (channel OR carrier proteins)
• without using energy/requiring no energy expenditure.
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OSMOSIS
Definition:
• Osmosis is the net movement of free water molecules by diffusion from a region
of higher water potential to a region of lower water potential through a
selectively permeable membrane and does not required energy.
Figure 2.4.6:
Net movement of water molecules in system with different concentration
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• Water diffuses from region of high water potential (less negative or zero value) to
a region of lower water potential (more negative value).
Solute potential, Ψs
• Solute affect the direction of osmosis.
• When solutes are added, they bind to water molecules. As a result there are fewer
free water molecules, reducing the capacity of water to move.
• Ψs value is always negative. The greater solute concentration, the more negative
its Ψs value. Ψs predict/ measure the change in Ψ with the presence of solute
molecules.
• All solutions therefore have lower water potential than pure water.
• The amount of this lowering is known as the solute potential (solute potential was
previously referred to as osmotic potential).
Pressure potential, ψP
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• Water enters plant cells by osmosis, pressure may build up inside the cell making
the cell turgid and increasing the pressure potential.
• In turgid plant cells is usually has a positive value as the entry of water causes
the protoplast to push against the cell wall.
• The cell content expand and pushes against the cell wall - TURGOR PRESSURE.
• Cell wall starts develop pressure, called the pressure potential.
• The cell wall in turn pushes back on the cell contents.
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ACTIVE TRANSPORT
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BULK TRANSPORT
• Certain particles are either too large to pass through the small pores in the
membrane or too hydrophilic to diffuse the phospholipids bilayer of the
plasma membrane.
• These materials are transported into or out of cells by bulk transport especially
in animal cells.
• Bulk transport is defined as the transport of material into or out of a cell by
enclosing it within a vacuole or vesicle.
• Requires energy
• Two types of bulk transport:
1. Endocytosis
2. Exocytosis
ENDOCYTOSIS
Phagocytosis Pinocytosis
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Phagocytosis
• Solid substances are taken into cell by invagination of plasma membrane
and formation of pseudopodium.
• Solid particles enclosed in vesicle forming food vacuole/ phagosome/
phagocytic vacuole.
• The vacuole fuse with lysosome.
• Intracellular digestion occur. The digested materials are absorbed by cells.
Pinocytosis
• Cell engulf and absorbs droplets of liquids
• e.g. taking in dissolved solutes by absorptive cells of the kidney and intestines
Phagocytosis Pinocytosis
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EXOCYTOSIS
• Cell secrete substances from cytoplasm of the cell by the fusion of vesicle
with the plasma membrane to the outside
• The cell secrete certain molecules such as waste product or specific product
of secretion such as hormone by the fussion of the vesicles with the plasma
membrane.
• As the contents of the vesicle are released from the cell, the membrane of the
secretory vesicle is incorporated into the plasma membrane.
• This process is the primary mechanism by which plasma membranes grow larger
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• Eg: β- cell of the pancreas (secretory cell) that make insulin secrete it into
extracellular fluid by exocytosis
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