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Abstract
In this paper, we present a framework for developing a Learning Health System (LHS) to provide means to a comput‑
erized clinical decision support system for allied healthcare and/or nursing professionals. LHSs are well suited to trans‑
form healthcare systems in a mission-oriented approach, and is being adopted by an increasing number of countries.
Our theoretical framework provides a blueprint for organizing such a transformation with help of evidence based
state of the art methodologies and techniques to eventually optimize personalized health and healthcare. Learning
via health information technologies using LHS enables users to learn both individually and collectively, and independ‑
ent of their location. These developments demand healthcare innovations beyond a disease focused orientation
since clinical decision making in allied healthcare and nursing is mainly based on aspects of individuals’ functioning,
wellbeing and (dis)abilities. Developing LHSs depends heavily on intertwined social and technological innovation,
and research and development. Crucial factors may be the transformation of the Internet of Things into the Internet
of FAIR data & services. However, Electronic Health Record (EHR) data is in up to 80% unstructured including free text
narratives and stored in various inaccessible data warehouses. Enabling the use of data as a driver for learning is chal‑
lenged by interoperability and reusability.
To address technical needs, key enabling technologies are suitable to convert relevant health data into machine
actionable data and to develop algorithms for computerized decision support. To enable data conversions, existing
classification and terminology systems serve as definition providers for natural language processing through (un)
supervised learning.
To facilitate clinical reasoning and personalized healthcare using LHSs, the development of personomics and func‑
tionomics are useful in allied healthcare and nursing. Developing these omics will be determined via text and data
mining. This will focus on the relationships between social, psychological, cultural, behavioral and economic determi‑
nants, and human functioning.
†
M. van Velzen & H.I. de Graaf- Waar are joint first author and contributed
equally to this work.
*Correspondence:
Mark van Velzen
[email protected]
Full list of author information is available at the end of the article
© The Author(s) 2023. Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which
permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the
original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or
other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line
to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory
regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this
licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativeco
mmons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.
van Velzen et al. BMC Medical Informatics and Decision Making (2023) 23:279 Page 2 of 11
Furthermore, multiparty collaboration is crucial to develop LHSs, and man-machine interaction studies are required
to develop a functional design and prototype. During development, validation and maintenance of the LHS continu‑
ous attention for challenges like data-drift, ethical, technical and practical implementation difficulties is required.
Keywords Learning health system, Clinical decision support system, Experience based evidence, Allied healthcare,
Nursing, Functionomics, Personomics, Key enabling technologies, Key enabling methodologies
organizations or systems. The third stage is when the communication portals [27]. EHR contain a variety of
improved performance generates new data (performance nomenclature and languages, abbreviations and defini-
to data) itself [28]. This accumulation of new data then tions and this occurs within and between individuals and
leads to new knowledge; as a gradual buildup of ‘experi- within and between health and healthcare disciplines [26,
ence based evidence’ [29–31]. LHS enables users to learn 33, 34]. Using structured (meta)data, standardized termi-
individually and collectively, by reflecting on their own nologies and classifications improves the interoperability
decisions and performances, and on top of this by reflect- and reusability of data. This extends the learning cycle by
ing on data gathered by others, independent of their using multiple data silos (Fig. 1, IIB) and consequently,
location. the global success of LHSs may depend heavily on FAIRi-
To optimize health-related decision making a number fication of health and health(care) related data (Fig. 1,
of factors are vital, Evidence should be available to the IIC). To be able to learn from data collected by others
right person, and in the right format, and through the [28], irrespective of location or profession and from mul-
correct channel (e.g. EHR), and at the right time in the tiple decentralized data-silos, data must be FAIR [35–37]
workflow [32] using routinely collected and research data preventing numerous amounts of health data exchange
[13, 14, 28]. Developing LHSs to optimize health related between research databases. It should contain not only
decision making is made harder due to issues of the acces- research and public data, but routinely collected health
sibility and interoperability of data held in so-called ‘data data as well [13, 14, 28, 38]. The reuse of health data, as
silos’ (Fig. 1, section II). Data in an EHR is considered as a the ultimate goal of FAIR, requires a set/system of agree-
single data silo, holding both structured and unstructured ments concerning: standardization of data, metadata,
data formats [26, 27, 33] including free text. This results unique identifiers, authentication & authorization, licens-
in locking in the data which restricts the potential learn- ing and key infrastructures [35–37].
ing cycle (Fig. 1, II A). A systematic review of systematic Developing LHSs for allied health care and nursing
reviews [27] found that EHRs data comprises up to 80% demands healthcare insights and innovations that go
as unstructured including free text narratives. Healthcare beyond a disease focused orientation [39]. Clinical rea-
registration has become more and more required from soning by these professionals, is driven by the apprecia-
clinical and legislation perspectives, and is also paral- tion of patient preferences [40, 41] and interrelationship
leled by an exponential increase in digital communica- between personal, psychological, social, and environ-
tion between patients and healthcare providers via online mental determinants [15] and their variability over time,
van Velzen et al. BMC Medical Informatics and Decision Making (2023) 23:279 Page 4 of 11
to understand the patients’ functioning and (dis)ability determinants, are available in structured format for sci-
[42, 43]. Besides, these determinants should be the focus entific research by Statistics Netherlands (CBS) [54] and
in shared decision making, as means to come to person- the National Institute for Public Health and the Envi-
alized healthcare [15, 44]. ronment (RIVM)[55]). In addition to linking public and
In the following section we present a framework to EHR data and transforming routinely collected data into
construct cCDSS in LHSs taking into account these machine actionable data, these procedures should also be
challenges. performed for empirical research data and wearable sen-
sor data. This IoFAIRaS-transformation, by applying the
Framework FAIR principles, maximizes the clinical meaningful reuse
Constructing computerized clinical decision support of health and healthcare data [35–37] in order to develop
in learning health systems multicenter multidisciplinary LHSs as represented in
The proposed framework (Fig. 2) uses the Cross Indus- Fig. 1C. Besides the reuse of research data, health data
try Standard Process for Data Mining (CRISP-DM) exchange acts [56] demands to put forward health data
Extension for Medical Domain [45], in every stage of the exchange between health information systems (HIS). The
development and research. The CRISP-DM is charac- Fast Healthcare Interoperability Resources (FHIR) is the
terized by its iterative nature, where the depth of details standard to put forward health data exchange between
of these processes described increases with every cycle HIS and could speed up the FAIRification of EHR data
[45]. Although multiple data mining models are avail- [38, 57, 58] and data from medical devices as well [59].
able, CRISP-DM is feasible and the most commonly used With huge amounts of unstructured data collected in
model in the medical domain [46]. Development is not EHRs [26], technical and, especially, semantic interoper-
a linear process, but for the sake of clarity in the con- ability remains challenging [60, 61]. Semantic interoper-
ceptual description, we present only basic information, ability, defined as the unambiguous representation of
divided into technological, healthcare, and research and clinical concepts [61], is complicated by heterogeneity
development aspects.1 In addition, we present in supple- of data quality and the recognition of concepts of con-
ment 1. in multiple steps (Fig. S1.) the detailed flow for cern in free text narratives suitable for allied healthcare
technical development. professionals and nurses [60]. To develop technical and
semantic interoperable data, all input data, including
Technologies free text narratives, must be mapped to existing ter-
Key enabling technologies (KET) [4, 6, 7] to address tech- minology or classification systems using named entity
nical needs are suitable to convert relevant health-related recognition (NER) [62]. Hereto, the International Clas-
data, from different sources, in machine actionable data sification of Function, Disabilities and Health (ICF) [43,
[35–37, 47] suitable for clinical meaningful exchange and 62], NANDA International classification of nursing diag-
federated learning [25]. noses (NANDA-I) [60], Nursing Outcome Classification
To develop machine actionable data, input data must be (NOC), SNOMED-CT [63–65] and International Clas-
transformed into FAIR data [35–37] (Fig. 2-I). Relevant sification of Diseases (ICD-11) [66] (Fig. 2-I) serve as
and useful input data is stored in different (in)accessible definition providers as these contain meaningful repre-
data silos like EHR systems, public databases, research sentations of clinical concepts for allied healthcare pro-
databases and wearables and sensors. Public databases fessionals and nurses.
contain potential useful data for clinical decision mak- When developing and maintaining a LHS with cCDSS,
ing on specific, e.g. environmental, determinants that according to data mining models, the data needs to be
are not documented in encounters with healthcare pro- prepared and modelled [45, 46]. Free text data must be
fessionals. For example, several studies have shown that validated, cleaned, repaired and abbreviations must be
environmental determinants are potentially relevant handled. Subsequently, both structured and unstruc-
determinants of health [39, 48–53]. Automatically link- tured EHR data can be extracted and processed using
ing public data to the EHR is preferable to expecting natural language processing techniques to map them to
healthcare professionals to gather this themselves (e.g. the classification terminologies [64]. Both unsupervised
In the Netherlands, public data containing clinical use- and supervised learning (i.e. machine learning or deep
ful information on social, environmental and economic learning) would be suitable for this (Fig. 2-I). The selec-
tion of techniques can be aided by Responsible Technol-
ogy frameworks like Fundamental Rights and Algorithms
1
Research data, developed ontologies and developed algorithms are consid- Impact Assessment [67].
ered as open science and therefor will be published in scientific literature, Respecting the FAIR principles and to prevent trans-
ontology databases like Bioportal, and all algorithms will be made available mission of huge amounts of data between silos, the data
to EHR providers, other researchers and developers.
van Velzen et al. BMC Medical Informatics and Decision Making (2023) 23:279 Page 5 of 11
remains stored in a machine-readable format in its origi- and enables the transformation from a disease focused to
nal location [36, 37]. Using Federated learning or Multi a personalized approach.
Party Computation [23, 24] algorithms are sent to the Transforming the health and healthcare system, in
data without full access to these data (Fig. 2-I). Only the this case, by developing a LHS, requires not only key
results of processed algorithms are collected preserving enabling technologies (KET) but key enabling method-
the optimum data privacy [23–25]. ologies (KEM) as well. KET have been proven as interna-
tional concepts [7, 86], while KEM are limited to national
concepts and contain eight methodologies which are
Key premises in healthcare encounters currently further developed [4, 9]. A reflection on used
Some systematic reviews [68, 69] have assessed the bar- KEM will be performed in a later phase of this project.
riers and factors influencing the implementation of The presence of a LHS with cCDSS, is considered a cru-
cCDSS. The included studies were limited to technology, cial social ingredient to enable the fulfilment of the mis-
organization and healthcare provider perspectives. Using sions of the Dutch Ministry of Health to improve health
cCDSS affects the primary process of care and, more and healthcare quality by learning via clinical data. This
importantly impacts patients (Fig. 2-II) [70–73]. Recom- evolution affects not only healthcare encounters, but also
mendations generated by cCDSS aim to improve patient EHR developers and healthcare organizations [13, 14,
relevant outcomes and therefore facilitate evidence based 19]. All relevant stakeholders such as; patients, health-
practice when healthcare professionals discuss these rec- care professionals, data scientists, data engineers, EHR
ommendations with their patients [40, 70]. vendors and healthcare organizations must collaborate to
Research has shown that social, functional, environ- identify clinical and technical needs and barriers. Code-
mental and personal determinants for decision making sign is a crucial element in KEMs [4, 9] and is vital to
by allied healthcare professionals and nurses [60, 74] are develop a functional design followed by prototype of a
mostly recorded in the unstructured free text areas of LHS with cCDSS [16, 17, 20–22, 68, 69, 87].
EHRs [26]. Within clinical reasoning of allied healthcare
professionals and nurses, the ICF [43] and NANDA-I Future Research & Development
[60] are often used as theoretical knowledge based classi- Before deployment in clinical practice, several scientific
fications. These classifications contain social, functional, methods are executed to develop, test and maintain a
environmental and personal determinants as elements working LHS with cCDSS (Fig. 2- III). At each stage of
and can be combined with reasoning frameworks like development the data is trained and tested on independ-
the hypothesis-oriented algorithm for clinicians II [75, ent datasets until acceptable performance is achieved.
76], or the nursing process model [77]. While these clas- Processes are executed with historical data followed by
sifications are useful to describe, clinical concepts are not the validation of the results by healthcare professionals
widely implemented in EHR systems for documentation and patients before implementation in a real time EHR
[62]. environment. Research using text and data mining, e,g.
For data supported personalized healthcare and pre- natural language processing or deep learning, will be
cision medicine, development of new, or deployment of performed to determine the interactions between social,
existing ontologies are crucial as prerequisite for machine psychological, cultural, behavioral and economic deter-
readable data [15, 19, 73, 78, 79]. Personomics [15] and minants, and human functioning to develop personomics
functionomics [42, 80] (Fig. 2-II) in addition to biologi- and functionomics.
cal omics [81–83] (e.g. genomics, proteomics, metabo- Man-machine interaction studies are crucial to develop
lomics, etc.) may provide for this [15, 80, 84]. the functional design followed by the prototype of a
The variety and sequencing of omics is not fully devel- LHS with cCDSS [88–90]. Supervised learning will be
oped and does not cover all domains in health [15]. Inter- performed for prediction analyses using decision trees,
actions between social, psychological, cultural, behavioral regression analysis and neural networks as analytical
and economic factors affecting the patients’ health beliefs tools [83, 91–98]. This lays the framework to develop
and illness approach within the medical system are algorithms suitable for computerized decision support in
described as personomics [15]. Studying the complex a LHS. These algorithms, decision rules and the results
structure and associations in human functioning has of the man-machine interaction studies are stepping
been defined as human functionomics [42, 80]. Person- stones to develop the prototype. It is then essential to
omics and functionomics are suitable for the domain of assess how well the prototype performs before deploy-
allied healthcare and nursing, and assisting personalized ment in clinical research as this saves costs and time
healthcare provision by these professions [42, 78, 80, 85]. [89]. When testing a non-operational system, healthcare
This expands the body of knowledge for decision making, professionals enter clinical data into the prototype, test
van Velzen et al. BMC Medical Informatics and Decision Making (2023) 23:279 Page 7 of 11
the feasibility, and evaluate whether the cCDSS recom- time data are processed, giving rise to the (im)possibil-
mendation is consistent with their clinical expertise and ity of informed consent and so approval of medical eth-
scientific knowledge [99–101]. If the prototype performs ics committees is crucial.
acceptably, then an impact analysis of the system pre- Considering these needs and demands, the FAIRifica-
cedes implementation in clinical practice. Impact analysis tion of health and research data needs to be accelerated.
could be done using cluster randomized controlled trials In the era of smart devices and internet of things (IoT)
[102–105] or retrospective cohort, pre-post and prospec- data are a source of information [59] about context,
tive cohort designs, using a single or multicenter setting history, physiology, functioning and behavior. Consid-
[106]. These have been shown to be suitable to evaluate ering the potential to link data from EHRs, empirical
the impact of a cCDSS [102–106]. Multiple baseline stud- research, public data, smart devices and IoT, the inter-
ies or interrupted-time-series are also appropriate ways net of FAIR Data & Services facilitates the optimal use
to analyze the impact [107, 108]. of life science technologies and artificial intelligence as
key enabling technologies [5–7, 9, 35, 47].
Deliverables While there are many possible advantages, domain
If the processes we have described are followed then experts, developers and data scientists should be aware
EHR providers would be able to convert their data into of disadvantages. They need to consider aspects like data
structured and standardized data. This would make EHR drift and technical and practical implementation difficul-
data machine actionable so it can be reused for other ties [119]. First, to overcome these challenges, the data
purposes. This could be data extraction for quality indi- and processed algorithms need to be maintained and
cators, or computerized clinical decision support, as tested regularly [120–123]. Second, early multi-stake-
described in the literature [34, 109–113]. holder dialogue and collaboration in a learning commu-
nity [21] and continuing evaluation of our framework is
General considerations vital to successfully develop and deploy in clinical care
To achieve the health and healthcare transformation [114, 124, 125]. Third, data sovereignty versus data soli-
envisaged by the Dutch nationwide transformative chal- darity [126] will have to be studied. Fourth, beside code-
lenges we presented a framework to develop a cCDSS signing via learning communities educational institutes
as part of a LHS for allied healthcare and nursing. Mul- should considerably educate agile health professionals in
tiparty collaboration will be crucial to develop, validate an agile manner [127].
and maintain a working LHS [21, 114]. The proposed the- Patients, nurses and allied healthcare profession-
oretical framework can also serve as a key enabling meth- als could benefit greatly if we develop and implement
odology [9] to develop and deploy LHSs in other health learning health systems together. This would improve
and healthcare domains and thereafter to be extensively healthcare and the healthcare system. This roadmap
validated and adjusted where necessary. As so, this paper provides guidance on how we could achieve the Dutch
opens up dialogue amongst experts to strengthen our ini- and project missions of personalized healthcare via a
tial thoughts and that of others before and during devel- learning health system.
opment of this methodology. Artificial intelligence is a
key enabling technology [4, 6, 7] which will be used to Supplementary Information
The online version contains supplementary material available at https://doi.
develop algorithms for clinical decision support in daily org/10.1186/s12911-023-02372-4.
practice. A working LHS with cCDSS could enable per-
sonalized healthcare by expanding the learning cycle. Additional file 1. Development of a Learning Health System; technical
The LHS follows the principles of evidence based prac- flow.
tice [40] to optimize safe and efficient healthcare provi-
sion (knowledge to performance), and enlarge experience Acknowledgements
based evidence (performance to data) [28–31]. We would also like to thank Dr. Adam Weir who was hired from personal fund‑
ings to provide feedback on the scientific English writing of the manuscript.
Reusing routinely collected health data could
(in accordance with Dutch Electronic Health Data Authors’ contributions
Exchange Act) [56] decrease administrative burden M. van Velzen: Literature review, conception of design, analysis and drafting
the manuscript. Shared first authorship with H.I. de Graaf-Waar.
and prevent harmful care [115, 116]. Access to empiri- H.I. de Graaf-Waar: Literature review, conception of design, analysis and draft‑
cal research data or routinely collected health data is ing the manuscript. Shared first authorship with M. van Velzen.
impeded by the European General Data Protection T. Ubert: Contribution to the conception of design, review manuscript.
R.F. van der Willigen: Contribution tot the technical parts of conception of
Regulation [117, 118]. The development and research design, review manuscript.
of LHSs faces the challenges of data privacy, informed L. Muilwijk Contribution to the conception of design, review manuscript.
consent and medical ethical approval. Historical or real M.A. Schmitt: Contribution to the conception of design, review manuscript.
van Velzen et al. BMC Medical Informatics and Decision Making (2023) 23:279 Page 8 of 11
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