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Table of Contents
1. Introduction to the Small Intestine
Function of small intestine
- Anatomy and Structure
- Function in Digestion and Absorption
nutrients. It is approximately 6 meters long and consists of three sections: the *duodenum,
jejunum, and ileum. The small intestine serves as the site for the breakdown of food through
digestive enzymes and bile, facilitating the absorption of carbohydrates, proteins, fats, vitamins,
and minerals. It is lined with specialized cells and structures, including villi and microvilli, that
The small intestine is the body major digestive organ. Within its twisted passageways, usable
nutrients are finally prepared for their journey into the cells of the body. The small intestine is a
muscular tube extending from the pyloric sphincter to the large intestine. It is the longest section
of the alimentary tube with an average length of 2 to 4m in a living person. Except of the initial
part of the small intestine, which mostly lies in a retroperitoneal positon, the small intestine
hangs in sausage-like coils in the abdominal cavity, suspended from the posterior abdominal wall
by the fan-shaped mesentery. The large intestine encircles and frames it in the abdominal cavity.
The small intestine serves multiple crucial functions that contribute to the body’s overall well-
being.
Chemical Digestion: The small intestine is the site where most chemical digestion occurs.
Enzymes secreted from the pancreas and bile from the liver are released into the small intestine
to break down proteins, carbohydrates, and fats. The digestive enzymes, such as amylase, lipase,
and proteases, work to convert large macromolecules into simpler, absorbable forms, like amino
Absorption: Once food is digested, the small intestine absorbs essential nutrients, including
amino acids, glucose, fatty acids, and vitamins. The absorption process primarily occurs in the
jejunum, where the large surface area provided by the villi and microvilli ensures efficient uptake
of nutrients into the bloodstream. Specialized transport mechanisms, like sodium-dependent co-
transporters and facilitated diffusion, ensure that nutrients enter the cells of the enterocytes and
Immune Function: The small intestine also plays an important role in immune defense. It is home
lymphoid follicles that monitor and protect the intestine from pathogens. These immune
structures help identify harmful microorganisms and trigger immune responses, preventing
Endocrine Function: The small intestine also secretes important hormones that regulate
digestion. For example, secretin stimulates the pancreas to release bicarbonate, which neutralizes
stomach acid in the duodenum. Cholecystokinin (CCK) stimulates the release of bile from the
gallbladder and pancreatic enzymes, facilitating digestion. Gastrin, produced by cells in the
stomach and duodenum, helps regulate gastric acid secretion and motility.
The wall of the small intestine is organized into four concentric layers, each with unique
structures and functions that facilitate digestion, absorption, movement, and protection. From
1. Mucosa (Innermost Layer): This is the most active layer in digestion and absorption. It has
three sub-layers:
a. Epithelium: this is made of simple columnar epithelial cells, it also contains villi (finger-like
projections) that increase surface area. Microvilli on enterocytes form the brush border, which
further increases surface area and contains enzymes (e.g., disaccharidases, peptidases) which
b. Lamina Propria: A layer of loose connective tissue that supports the epithelium. It contains:
iii. Immune cells– macrophages, plasma cells, and lymphocytes for defense.
c. Muscularis Mucosae: this is a thin layer of smooth muscle, it provides local movement of the
2. Submucosa: This layer lies beneath the mucosa and consists of: Dense irregular connective
tissue Blood vessels and lymphatics– for nutrient transport; Nerve plexus (Meissner’s plexus)–
part of the enteric nervous system; regulates secretions and local blood flow.
In the duodenum, it contains Brunner’s glands which secrete alkaline mucus (rich in
bicarbonate) to neutralize gastric acid and protect the epithelium and also provide a suitable pH
3. Muscularis Externa: this is responsible for peristalsis and segmentation movements, this
layer has two layers of smooth muscle: Inner circular layer( compresses and mixes intestinal
contents) and Outer longitudinal layer (shortens the intestine during movement). Between these
two muscle layers lies the Myenteric plexus (Auerbach’s plexus), a network of neurons that
control gut motility. These movements help mix chyme, enhance digestion, and propel contents
forward.
4. Serosa (Outer Layer): This is also called the visceral peritoneum, it is a thin layer of loose
connective tissue covered by simple squamous epithelium (mesothelium). It protects the intestine
and secretes serous fluid to reduce friction with other abdominal organs. In parts of the
duodenum that are retroperitoneal (behind the peritoneum), this outer layer is called adventitia
instead of serosa.
a. Plicae Circulares (Circular Folds): This is a large permanent folds of mucosa and
submucosa. It increases surface area and slow down movement of chyme for better absorption.
b. Villi: This is found on the mucosa, it’s a finger-like projections (0.5–1.5 mm tall) that greatly
increase surface area. The core of villus contains: Capillaries (for carbohydrate and protein
absorption); Lacteal (for fat absorption); Smooth muscle fibers (to help villus movement and
lymph flow).
c. Microvilli: It is a microscopic projections on the apical surface of enterocytes and form the
brush border. It contain digestive enzymes (brush border enzymes). The huge surface area
This multi-layered design of the small intestine wall is essential for: Efficient digestion (via
enzymes and secretions); Maximum absorption (via large surface area and transport
mechanisms); Protection (via mucus, immune cells, and pH buffering) and Motility (via muscle
The small intestine's complex physiology ensures that food is properly digested and absorbed,
Motility: Two key movements, peristalsis and segmentation, facilitate the passage of chyme
through the small intestine. Peristalsis is the wave-like muscle contractions that push chyme
forward, while segmentation allows the chyme to mix and come into contact with the intestinal
lining for nutrient absorption. Segmentation increases the time that nutrients remain in the small
Digestion: The small intestine's digestive process is highly dependent on enzymes and bile.
Pancreatic enzymes like amylase (which breaks down carbohydrates), lipase (which breaks down
fats), and proteases (which break down proteins) are released into the small intestine to further
break down food into absorbable nutrients. Bile, produced by the liver and stored in the
These are simple tubular glands of intestine which open into the lumen of intestine between the
villi. Intestinal glands are lined by columnar cells. Lining of each gland is continuous with
Epithelial cells lining the intestinal glands undergo division by mitosis at a faster rate. Newly
formed cells push the older cells upward over the lining of the villi. These cells which move to
villi are called enterocytes, which secrete the enzymes. Old enterocytes are continuously shed
The crypts of lieberkuhn are found in the mucosa of the small intestine, specifically between
the bases of the villi. It is also present throughout the small intestine (duodenum, jejunum, and
ileum) and also in the large intestine, but they are most active in the small intestine.
Structure: Each crypt is a pit-like invagination of the epithelium that extends down into the
lamina propria. At the base of each crypt are actively dividing stem cells, which migrate upward
1. Enterocytes (Absorptive cells)– Located higher up on the villi but also found in crypts; absorb
nutrients.
antimicrobial substances.
4. Enteroendocrine cells– Secrete various hormones like secretin, cholecystokinin (CCK), GIP,
and motilin.
5. Stem cells– Divide continuously to regenerate all intestinal epithelial cell types every 3–5
days.
Functions
BRUNNER’S GLAND:
These are compounnd of tubuloalveolar glands located only in the submucosa of the duodenum.
In addition to intestinal gland, the first part of duodenum contains some mucus glands called
Brunner glands. These glands penetrates muscularis mucosa and extend up to submucus coat of
the intestinal wall. Brunner glands open into the the lumen of intestine directly. These glands
secretes mucus and traces enzymes. It is found in the duodenum but not found in the jejunum or
ileum.
Structure: it’s a branched, coiled glands that open into the base of the crypts of Lieberkühn and
mucin; urogastrone (an epidermal growth factor that inhibits gastric acid secretion and promotes
healing).
Functions
It neutralizes acidic chyme from the stomach to protect the intestinal mucosa.
Regulation of Secretion:
It is Inhibited by: Sympathetic stimulation, which can reduce mucus secretion and
SUCCUS ENTERICUS:
Succus entericus is a watery, enzyme-rich secretion produced by the crypts of Lieberkühn in the
mucosa of the small intestine. About 1 to 2 liters per day are produced.
Composition: It contains water about 99.5%; Mucus (from goblet cells) Digestive enzymes,
including:
Disaccharidases, this break down sugars, for example; maltase, sucrase, lactase
enterokinase, urease.
parietal cells.
hormones. processes.
secretion.
bicarbonate-rich pancreatic
juice.
electrolyte secretion.
Polarity of Cells
The cells in the small intestine exhibit polarity, with distinct apical and basolateral surfaces.
The apical surface is exposed to the lumen (the cavity inside the intestine) and is equipped with
*microvilli* to enhance nutrient absorption. The basolateral surface interfaces with the
underlying tissues, where nutrients are transported into the bloodstream.
Schematic diagram of Enterocyte polarity, showing the microvilli and basolateral surface of the
cell
Diagram Cell types, enterocyte, atlas of plant and animal histology
Transport Systems in the Small Intestine
The small intestine has highly specialized mechanisms for transporting nutrients from the lumen
into the bloodstream or lymphatic system.
Active Transport: One of the most critical transport mechanisms in the small intestine is active
transport, which uses energy to move nutrients against concentration gradients. For example, the
sodium-glucose co-transporter helps absorb glucose by coupling it with sodium ions, which are
absorbed into enterocytes and then transported into the blood.
Facilitated Diffusion: Fructose and some other nutrients are absorbed by facilitated diffusion, a
process that doesn't require energy. This mechanism relies on specific transporters that allow
these molecules to move across the enterocyte membrane from high to low concentration.
Fat Absorption: Fats are emulsified by bile salts into small droplets known as micelles, which
enable the absorption of fatty acids and monoglycerides into enterocytes. Inside the cells, these
molecules are reassembled into triglycerides and packaged into chylomicrons, which are
transported through the lymphatic system and eventually enter the bloodstream.
Water and Electrolyte Absorption: The small intestine is also crucial for maintaining fluid
balance. Water is absorbed passively through osmosis, while electrolytes, including sodium and
potassium, are absorbed through active transport mechanisms. This helps regulate the body’s
fluid balance and ensures homeostasis.
4. Secretion and Hormonal Regulation
The small intestine secretes several substances to facilitate digestion, protect itself, and regulate
the digestive process.
Digestive Enzymes
The enterocytes of the small intestine secrete enzymes such as lactase, sucrase, and maltase,
which break down complex sugars into simpler molecules that can be absorbed.
Mucus Secretion
The*goblet cells secrete mucus that helps lubricate and protect the intestinal lining from
mechanical stress and digestive enzymes.
Enteroendocrine Hormones
Cells in the small intestine secrete hormones like:
- Secretin: Stimulates the pancreas to release **bicarbonate*, neutralizing acidic chyme.
- Cholecystokinin: Stimulates the gallbladder to release bile and the pancreas to release
digestive enzymes
pH Regulation
The duodenum is slightly alkaline (pH 7-8) due to the secretion of alkaline mucus and
bicarbonate from Brunner’s glands. This neutralizes the acidic chyme from the stomach,
providing a favorable pH for enzyme activity in digestion.
Diagram of the pH gradient across the small intestine, highlighting the transition from acidic to
*alkaline*.
*5. Propulsive Movements and Peristalsis
The small intestine uses propulsive movements to move food along and mix it with digestive
enzymes for efficient absorption.
Peristalsis
This is a wave-like muscle contraction that moves food through the small intestine. It helps
propel the food along the digestive tract.
Segmentation
In addition to peristalsis, the small intestine also undergoes *segmentation*, which involves
alternating contractions that mix the food with digestive enzymes and increase absorption
efficiency.
Ileocecal Valve
The ileocecal valve regulates the flow of material from the ileum(small intestine) to the cecum
(large intestine). It prevents backflow of material and regulates the passage of digested material.
Crohn's disease is an inflammatory bowel disease (IBD). Ulcerative colitis and microscopic
colitis are other common types of IBD.
What causes Crohn's disease?
The cause of Crohn's disease is unknown. Researchers think that an autoimmune reaction may
be one cause. An autoimmune reaction happens when your immune system attacks healthy cells
in your body. Genetics may also play a role, since Crohn's disease can run in families.
Stress and eating certain foods don't cause the disease, but they can make your symptoms worse.
Who is more likely to develop Crohn's disease?
There are certain factors that may raise your risk of Crohn's disease:
Family history of the disease. Having a parent, child, or sibling with the disease puts you at
higher risk.
Smoking. This may double your risk of developing Crohn's disease.
Certain medicines, such as antibiotics, birth-control pills, and nonsteroidal anti-inflammatory
drugs (NSAIDs) such as aspirin or ibuprofen. These may slightly increase your chance of
developing Crohn's.
A high-fat diet. This may also slightly increase your risk of Crohn's.
What are the symptoms of Crohn's disease?
The symptoms of Crohn's disease can vary, depending where and how severe your inflammation
is. The most common symptoms include:
Diarrhea
Cramping and pain in your abdomen
Weight loss
Some other possible symptoms are:
Anemia, a condition in which you have fewer red blood cells than normal
Eye redness or pain
Fatigue
Fever
Joint pain or soreness
Nausea or loss of appetite
Skin changes that involve red, tender bumps under the skin
Stress and eating certain foods such as carbonated (fizzy) drinks and high-fiber foods may make
some people's symptoms worse.
A physical exam, including:
Checking for bloating in your abdomen.
Listening to sounds within your abdomen using a stethoscope.
Tapping on your abdomen to check for tenderness and pain and to see if your liver or spleen is
abnormal or enlarged.
Various tests, including:
Blood and stool tests.
A colonoscopy.
An upper GI endoscopy, a procedure in which your provider uses a scope to look inside your
mouth, esophagus, stomach, and small intestine.
Diagnostic imaging tests, such as a CT scan or an upper GI series. An upper GI series uses a
special liquid called barium and x-rays. Drinking the barium will make your upper GI tract
more visible on an x-ray.
What are the treatments for Crohn's disease?
There is no cure for Crohn's disease, but treatments can decrease inflammation in your
intestines, relieve symptoms, and prevent complications. Treatments include medicines, bowel
rest, and surgery. No single treatment works for everyone. You and your provider can work
together to figure out which treatment is best for you:
Medicines for Crohn's include various medicines that decrease the inflammation. Many of these
medicines do this by reducing the activity of your immune system. Certain medicines can also
help with symptoms or complications, such as nonsteroidal anti-inflammatory drugs and anti-
diarrheal medicines. If your Crohn's causes an infection, you may need antibiotics.
Bowel rest involves drinking only certain liquids or not eating or drinking anything. This allows
your intestines to rest. You may need to do this if your Crohn's disease symptoms are severe. You
get your nutrients through drinking a liquid, a feeding tube, or an intravenous (IV) tube. You
may need to do bowel rest in the hospital, or you may be able to do it at home. It will last for a
few days or up to several weeks.
Surgery can treat complications and reduce symptoms when other treatments are not helping
enough. The surgery will involve removing a damaged part of your digestive tract to treat:
Fistulas
Bleeding that is life threatening
Intestinal obstructions
Side effects from medicines when they threaten your health
Symptoms when medicines do not improve your condition
Changing your diet can help reduce symptoms. Your provider may recommend that you make
changes to your diet, such as:
Avoiding carbonated drinks
Avoiding popcorn, vegetable skins, nuts, and other high-fiber foods
Drinking more liquids
Eating smaller meals more often
Keeping a food diary to help identify foods that cause problems
In some cases, your provider may ask you to go on a special diet, such as a diet that is:
High calorie
Lactose free
Low fat
Low fiber
Low salt
If you are not absorbing enough nutrients, you may need to take nutritional supplements and
vitamins.
National Institute of Diabetes and Digestive and Kidney Diseases
Key Points for small intestine cancer
Small intestine cancer is a rare disease in which malignant (cancer) cells form in the tissues of
the small intestine.
There are five types of small intestine cancer.
Diet and health history can affect the risk of developing small intestine cancer.
Signs and symptoms of small intestine cancer include unexplained weight loss and abdominal
pain.
Tests that examine the small intestine are used to diagnose and stage small intestine cancer.
Certain factors affect prognosis (chance of recovery) and treatment options.
Small intestine cancer is a rare disease in which malignant (cancer) cells form in the tissues of
the small intestine.
The small intestine is part of the body’s digestive system, which also includes the esophagus,
stomach, and large intestine. The digestive system removes and processes nutrients (vitamins,
minerals, carbohydrates, fats, proteins, and water) from foods and helps pass waste material out
of the body. The small intestine is a long tube that connects the stomach to the large intestine. It
folds many times to fit inside the abdomen.
The small intestine is a long tube-like organ that connects the stomach to the large intestine. The
small intestine includes the duodenum, jejunum, and ileum.
There are five types of small intestine cancer.
The types of cancer found in the small intestine are adenocarcinoma, sarcoma, neuroendocrine
tumors, gastrointestinal stromal tumor, and lymphoma. This summary discusses adenocarcinoma
and leiomyosarcoma (a type of sarcoma).
Adenocarcinoma starts in glandular cells in the lining of the small intestine and is the most
common type of small intestine cancer. Most of these tumors occur in the part of the small
intestine near the stomach. They may grow and block the intestine.
Leiomyosarcoma starts in the smooth muscle cells of the small intestine. Most of these tumors
occur in the part of the small intestine near the large intestine.
Diet and health history can affect the risk of developing small intestine cancer.
Anything that increases a person's chance of getting a disease is called a risk factor. Not every
person with one or more of these risk factors will develop small intestine cancer, and it will
develop in some people who don't have any known risk factors. . Risk factors for small intestine
cancer include the following:
Eating a high-fat diet.
Having Crohn disease.
Having celiac disease.
Having familial adenomatous polyposis (FAP).
Signs and symptoms of small intestine cancer include unexplained weight loss and abdominal
pain.
These and other signs and symptoms may be caused by small intestine cancer or by other
conditions. Check with your doctor if you have any of the following:
Pain or cramps in the middle of the abdomen.
Weight loss with no known reason.
A lump in the abdomen.
Blood in the stool.
Tests that examine the small intestine are used to diagnose and stage small intestine cancer.
Procedures that make pictures of the small intestine and the area around it help diagnose small
intestine cancer and show how far the cancer has spread. The process used to find out if cancer
cells have spread within and around the small intestine is called staging.
In order to plan treatment, it is important to know the type of small intestine cancer and whether
the tumor can be removed by surgery. Tests and procedures to detect, diagnose, and stage small
intestine cancer are usually done at the same time. In addition to asking about your personal
and family health history and doing a physical exam, your doctor may perform the following
tests and procedures:
Blood chemistry studies: A procedure in which a blood sample is checked to measure the
amounts of certain substances released into the blood by organs and tissues in the body. An
unusual (higher or lower than normal) amount of a substance can be a sign of disease.
Liver function tests: A procedure in which a blood sample is checked to measure the amounts of
certain substances released into the blood by the liver. A higher than normal amount of a
substance can be a sign of liver disease that may be caused by small intestine cancer.
Endoscopy: A procedure to look at organs and tissues inside the body to check for abnormal
areas. There are different types of endoscopy:
Upper endoscopy: A procedure to look at the inside of the esophagus, stomach, and duodenum
(first part of the small intestine, near the stomach). An endoscope is inserted through the mouth
and into the esophagus, stomach, and duodenum. An endoscope is a thin, tube-like instrument
with a light and a lens for viewing. It may also have a tool to remove tissue samples, which are
checked under a microscope for signs of cancer.
Capsule endoscopy: A procedure to look at the inside of the small intestine. A capsule that is
about the size of a large pill and contains a light and a tiny wireless camera is swallowed by the
patient. The capsule travels through the digestive tract, including the small intestine, and sends
many pictures of the inside of the digestive tract to a recorder that is worn around the waist or
over the shoulder. The pictures are sent from the recorder to a computer and viewed by the
doctor who checks for signs of cancer. The capsule passes out of the body during a bowel
movement.
Double balloon endoscopy: A procedure to look at the inside of the small intestine. A special
instrument made up of two tubes (one inside the other) is inserted through the mouth or rectum
and into the small intestine. The inside tube (an endoscope with a light and lens for viewing) is
moved through part of the small intestine and a balloon at the end of it is inflated to keep the
endoscope in place. Next, the outer tube is moved through the small intestine to reach the end of
the endoscope, and a balloon at the end of the outer tube is inflated to keep it in place. Then, the
balloon at the end of the endoscope is deflated and the endoscope is moved through the next part
of the small intestine. These steps are repeated many times as the tubes move through the small
intestine. The doctor is able to see the inside of the small intestine through the endoscope and
use a tool to remove samples of abnormal tissue. The tissue samples are checked under a
microscope for signs of cancer. This procedure may be done if the results of a capsule endoscopy
are abnormal. This procedure is also called double balloon enteroscopy.
Laparotomy: A surgical procedure in which an incision (cut) is made in the wall of the abdomen
to check the inside of the abdomen for signs of disease. The size of the incision depends on the
reason the laparotomy is being done. Sometimes organs or lymph nodes are removed or tissue
samples are taken and checked under a microscope for signs of disease.
Biopsy: The removal of cells or tissues so they can be viewed under a microscope to check for
signs of cancer. This may be done during an endoscopy or laparotomy. The sample is checked by
a pathologist to see if it contains cancer cells.
Upper GI series with small bowel follow-through: A series of x-rays of the esophagus, stomach,
and small bowel. The patient drinks a liquid that contains barium (a silver-white metallic
compound). The liquid coats the esophagus, stomach, and small bowel. X-rays are taken at
different times as the barium travels through the upper GI tract and small bowel.
CT scan (CAT scan): A procedure that makes a series of detailed pictures of areas inside the
body, taken from different angles. The pictures are made by a computer linked to an x-ray
machine. A dye may be injected into a vein or swallowed to help the organs or tissues show up
more clearly. This procedure is also called computed tomography, computerized tomography, or
computerized axial tomography.
MRI (magnetic resonance imaging): A procedure that uses a magnet, radio waves, and a
computer to make a series of detailed pictures of areas inside the body. This procedure is also
called nuclear magnetic resonance imaging (NMRI).
Certain factors affect prognosis (chance of recovery) and treatment options.
The prognosis and treatment options depend on the following:
The type of small intestine cancer.
Whether the cancer is in the inner lining of the small intestine only or has spread into or
beyond the wall of the small intestine.
Whether the cancer has spread to other places in the body, such as the lymph nodes,
liver, or peritoneum (tissue that lines the wall of the abdomen and covers most of the
organs in the abdomen).
Whether the cancer can be completely removed by surgery.
Whether the cancer is newly diagnosed or has recurred.
Stages of Small Intestine Cancer
What is SIBO?
SIBO occurs when there's an abnormal increase in bacterial populations in the small
intestine, which typically has fewer bacteria than the colon.
The excess bacteria can interfere with nutrient absorption, potentially leading to
malnutrition and other complications.
Causes:
Surgery:
Complications from abdominal surgery, such as the formation of pouches or blockages
in the small intestine, can contribute to SIBO.
Disease:
Conditions that slow down the movement of food through the small intestine, such as
diabetes or scleroderma, can create a breeding ground for bacteria.
Structural problems:
Anomalies in the small intestine, such as strictures or diverticulosis, can also lead to
bacterial overgrowth.
Medications:
Some medications, like proton-pump inhibitors, can affect the digestive system and
contribute to SIBO.
Symptoms:
Gastrointestinal:
Bloating, gas, abdominal pain, diarrhea, and constipation are common symptoms.
Nutritional deficiencies:
SIBO can interfere with the absorption of nutrients, potentially leading to malnutrition.
Diagnosis:
Breath test:
A breath test can help detect the presence of excess bacteria in the small intestine.
Small bowel aspirate and culture:
In this procedure, a sample of intestinal fluid is collected and cultured to identify the
bacteria present.
Treatment:
Antibiotics: Antibiotics are commonly used to eliminate the excess bacteria.
Addressing underlying causes: Treating the underlying conditions that contribute to
SIBO, such as surgery or disease, is also important.
Dietary changes: In some cases, dietary changes, like avoiding high FODMAP foods,
may be helpful in managing symptoms, according to Johns Hopkins Medicine.
Important Note: SIBO is generally not a life-threatening condition, but severe cases
can lead to malnutrition
Lactose intolerance in the small intestine occurs because the body doesn't produce
enough of the enzyme lactase, which is needed to digest lactose, a sugar found in milk
and dairy products. Normally, lactase breaks down lactose into simpler sugars that the
small intestine can absorb. When lactase is deficient, undigested lactose passes into
the large intestine, where bacteria ferment it, causing symptoms like bloating, gas, and
diarrhea.
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