ARTICULO 1 - copia
ARTICULO 1 - copia
Abstract— The estimation of the CO2 concentration variations quantification of the farm global emissions, the CO2 uptake
due to plants photosynthesis has become a topic of outstanding by vegetation through photosynthesis and its release through
interest in view of evaluating the carbon footprint of greenhouses cellular respiration need to be estimated for full carbon budget
and farms. In this framework, distributed sensing solutions can
be an alternative to expensive and power-consuming gas analyz- and net ecosystem exchange assessment. However, while the
ers. In this article, a low-cost sensor node thought for the accurate CO2 concentration range in exhaust gases of industrial plants
monitoring of photosynthesis-related quantities (i.e., temperature, or combustion-engines is in the order of some % v/v [5],
pressure, water vapor concentration, and CO2 concentration) much lower concentrations should be detected in the case
is presented. The system is validated through measurement of environmental CO2 monitoring (i.e., in the tens [6] or
campaigns involving plants enclosed in an accumulation chamber
in the presence of artificial light with controlled intensity, hundreds [7] of ppm), hence, great attention should be paid to
photoperiod, and spectral composition. A simplified preliminary the choice of the sensing technique, the conditioning, and the
model is also proposed to interpret the obtained results from acquisition of the sensor response. Most of the CO2 sensors
the point of view of the kinetics of the gas exchanges, achieving integrated in IoT devices exploit nondispersive-infrared
the estimation of the CO2 uptake and release rates ascribable (NDIR) [8] and photoacoustic [9] sensing techniques: optical-
to the plants activity.
based sensors are usually preferred since they offer a good
Index Terms— CO2 measurement, environmental monitoring, compromise between measurement performance, cost, and
gas emissions monitoring, Internet of Things (IoT), LoRa,
power consumption, although their integration in low-power
photosynthesis, smart agriculture.
systems poses a significant challenge due to their reliance on
highly power-consuming optical sources.
I. I NTRODUCTION Among the existing photosynthesis measurement methods,
canopy chambers and eddy covariance techniques are the most
T HERE is a growing interest in the estimation of
greenhouse gas emissions and global carbon footprint of
farms in view of evaluating the impact of human activities
used for direct carbon fluxes estimation through small-scale
measurements (at the plant or the canopy level) or large-scale
on the environment [1]. In this sense, those enabling measurements (at the ecosystem size). Eddy covariance tech-
technologies involved in the Internet of Things (IoT) and the niques are based on the continuous measurement of the air flux
smart agriculture frameworks can come into play to offer above the canopy by using ultrasonic anemometers in conjunc-
large-scale distributed data collection systems oriented toward tion with gas analyzers and further postprocessing [10]. The
the low power and low-cost perspectives [2], [3] in place of temporal resolution can be quite dense, but the deployment
expensive and power-consuming gas analyzers. While low-cost costs are high and not often compatible with small-sized
systems for pervasive gas sensing are especially devoted to farms. Moreover, particular requirements must be satisfied
air quality monitoring in urban or industrial contexts [4], for accurate measurements, such as atmospheric stability and
to our knowledge, there are no contributions aimed at land homogeneity and flatness. On the other hand, canopy
monitoring the vegetation-related CO2 . Indeed, apart from the chambers allow tests on single plants or on single leaves
with less expensive instruments than micrometeorological
Received 15 August 2024; revised 5 November 2024; accepted 25 November towers. Two main approaches can be identified: steady-state
2024. Date of publication 25 December 2024; date of current version open systems [11], [12], [13], [14] and transient-state closed
13 January 2025. This work was supported by the Agritech National Research
Center through European Union Next-GenerationEU (Piano Nazionale di systems [15], [16]. In the first case, flow measurements
Ripresa e Resilienza (PNRR)–Missione 4 Componente 2, Investimento 1.4– are performed by using close chambers or cuvettes with
D.D.1032 17/06/2022, CN00000022) under Grant B63C22000640005. The inlet and outlet openings for the continuous injection of air
Associate Editor coordinating the review process was Dr. George Dan Mois.
(Corresponding author: Irene Cappelli.) fluxes with controlled CO2 and H2 O concentration and flow.
The authors are with the Department of Information Engineering and Quantitative estimates of the produced CO2 are achieved by
Mathematics, University of Siena, 53100 Siena, Italy (e-mail: cappelli@ measuring the concentration variation at the inlet and outlet
diism.unisi.it; [email protected]; [email protected]; valerio.vignoli@
unisi.it; [email protected]). of the chamber and knowing the airflow rate and the chamber
Digital Object Identifier 10.1109/TIM.2024.3522409 volume. Ideally, this measurement approach allows to carry
1557-9662 © 2024 IEEE. All rights reserved, including rights for text and data mining, and training of artificial intelligence
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5500711 IEEE TRANSACTIONS ON INSTRUMENTATION AND MEASUREMENT, VOL. 74, 2025
out measurements on entire plants and over long time periods the model has a general formulation, the fit parameters
since the samples under test are maintained in ideal conditions are plant-specific since they embody information about the
of CO2 , water vapor, and temperature, however, complex actual exchange ability of the plant under test and they
instrumentation (i.e., flow controllers, pumping systems, gas incorporate the dependence of these rates on the test con-
cylinders, and on site power supply) is required, which ditions including temperature and abiotic stresses. Tests are
hinders the usability in prolonged open field deployments performed for a prolonged period to prove the usability of
and significantly increases material and installation costs. the designed system, but shorter tests could be sufficient to
The same approach is exploited by expensive and portable estimate the plants uptake and release rates according to the
instruments as the commercial LI-6800 by LI-COR, which proposed model. Indeed, as it is general for transient-state
performs simultaneous fluorescence and gas exchange mea- close systems, this approach is designed for short-study only
surements on a single leaf and not on the entire plant. This and the estimate of the slope of the first hours of carbon
kind of device allows for very accurate measurements but at uptake is sufficient to predict the uptake rate, considering
the expense of higher cost and not continuous but specific also that the plant starts working in conditions different
acquisitions. from realistic ones as the concentration inside the chamber
On the other hand, the close chamber systems allow to decreases.
reduce the complexity of the setup estimating the photosyn- The whole measurement approach differs from those exist-
thetic rate from the change rate of the CO2 concentration ing in the literature thanks to the simplicity of both the
with time, however, these approaches can be generally used low-cost sensing system and the measurement setup (not
for short-term studies only, to avoid alterations of the abiotic requiring power grid connection and sophisticated hardware).
condition inside the chamber due to its closure (i.e., temper- The system is therefore usable for all those tests conditions and
ature rise, water condensation, and water stress) which may setups comparable with the ones presented. For example, in the
affect the photosynthetic processes [17], [18]. Furthermore, field of industrial cultivation, highly technological greenhouses
the gas concentration monitoring in existing chamber-based are increasingly used. They are real controlled environments
systems, both prototype and commercial, is carried out where environmental conditions are monitored in terms of
with expensive and power-consuming infrared gas analyz- lighting protocols (usually colored artificial light), tempera-
ers (IRGAs), while to our knowledge, no low-cost yet accurate ture, and humidity. The deployment of the proposed system
IoT systems for the monitoring of the vegetation-related in this context is therefore rather straightforward although the
CO2 exist. chamber geometry should be revised and energy harvesting
In this framework, we propose a novel approach that systems as those presented in [20] should be foreseen to supply
exploits the low-cost sensing nodes characterized in [19] in the nodes. A different matter concerns experiments in tradi-
conjunction with a close accumulation chamber housing the tional greenhouses or open field contexts. Indeed, every time
plants under test. Although the flow measurements approach the test environment is characterized by a strong gas exchange
is generally the most used in literature, the proposed solution with the outside environment, the proposed measurements
based on a closed chamber is simpler and easier to be cannot be performed, unless adequate measurement chambers
effectively implemented. Indeed, in steady-state systems, the are used. Moreover, greater attention should be paid to the test
real-time adjustment of the concentration inside the chamber duration and to the measurement setup to limit alterations of
is quite challenging as it requires accurate control of the the ambient conditions inside the chamber, which might be
flows to guarantee a uniform and stable concentration around more critical than in controlled environments.
the plant and measurable variations of the CO2 concentration The rest of this article is organized as follows. In Section II,
between inlet and outlet flows. On the other hand, with the the materials and methods are resumed, providing a description
proposed approach, no flow control is needed and only the of the designed sensor node and the indication of the setup
flow exchange with the environment outside the chamber must and procedures used for the tests. Section III resumes the
be accounted. outcomes of the CO2 sensor calibration, as presented in [19],
Extensive measurement campaigns are then performed in and presents the experimental results obtained from the tests
the laboratory to test the instrumentation and prove its suc- with plants. Section IV further investigates these outcomes,
cess in accurately measuring photosynthesis-related quantities giving their interpretation using the simplified gray-box model
(i.e., temperature, pressure, water vapor concentration, and which describes the CO2 exchange fluxes. Finally, Section V
CO2 concentration). The plants under test are subjected to closes this article outlining the conclusions.
artificial lighting protocols at controlled intensity, spectral
composition, and photoperiod to have stable and repeatable II. M ATERIALS AND M ETHODS
lighting conditions during distinct measurement campaigns to In the following, the architecture of the IoT monitoring
better investigate the expected correlation between photosyn- system is briefly presented together with the description of
thetic activity and light radiation. A simplified “gray-box” the setup employed for the CO2 sensors calibration and for
model for the CO2 exchange, based on the photosynthesis the laboratory tests.
chemical reaction, is then proposed as a tool to interpret
the obtained results and to validate the outcomes of the A. IoT Monitoring System Architecture
measurements, thus providing a preliminary assessment of The block diagram of the developed IoT monitoring archi-
vegetation-related CO2 uptake and release rates. Even if tecture is reported in Fig. 1(a). It is composed of LoRa
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CAPPELLI et al.: IoT SYSTEM FOR MEASUREMENT AND INTERPRETATION OF PHOTOSYNTHESIS-RELATED CO2 FLUXES 5500711
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5500711 IEEE TRANSACTIONS ON INSTRUMENTATION AND MEASUREMENT, VOL. 74, 2025
Fig. 3. Block diagram of the calibration chain used for the calibration of
the CO2 sensor.
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CAPPELLI et al.: IoT SYSTEM FOR MEASUREMENT AND INTERPRETATION OF PHOTOSYNTHESIS-RELATED CO2 FLUXES 5500711
Fig. 5. Spectral distribution of the chosen light treatment measured by the Fig. 7. Results collected during test 1: measured CO2 concentration for the
spectrometer and normalized to the intensity measured by the pyranometer. three sensor nodes (as per legend) and irradiance in blue.
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CAPPELLI et al.: IoT SYSTEM FOR MEASUREMENT AND INTERPRETATION OF PHOTOSYNTHESIS-RELATED CO2 FLUXES 5500711
Although the model has a general formulation, the fit param- is the preexponential term (considered constant for reduced
eters are plant-dependent since they describe the exchange temperature gradients), T is the absolute temperature in K ,
ability of the tested plant under specific test conditions. λi = (Ei /R) is the ratio between the activation energy
Moreover, the parameters incorporate also information about (assumed constant for reduced temperature gradients), and
the temperature and humidity dependence of the observed the gas constant R. Therefore, these rates incorporate also
phenomena and the specific response of the plant to possible information about the effect of the temperature variation on
abiotic stresses. the observed phenomena.
The stoichiometric formula of the photosynthesis is usually The equation [S] = [SO ] + [SA ] = constant holds since
summarized by the net equation in (3) (n is the stoichiometric the concentration of the total amount of photosynthetic sites
coefficient), which emphasizes the CO2 reaction with water, (S) is always the sum of the concentrations of activated and
its reduction to carbohydrate, and the production of O2 as nonactivated/regenerated sites and the illuminated leaf area
byproduct of the reaction [24] is assumed constant during consecutive days of the same
light
test. Moreover, the initial conditions in absence of light are
nCO2 + nH2 O −→ n(CH2 O) + nO2 . (3) [SA ] = 0 and [SO ] = [S]. From now on, [X ] is used to indicate
the molar concentration of species X .
For n equal to six, six moles of CO2 and six moles of The following balance equations can be written for [SA ]
H2 O are transformed into one mole of glucose (C6 H12 O6 ) and [SO ], where I is the absolute light intensity, I0 is a
and six moles of O2 , thus giving the net stoichiometry of reference light intensity, and m, p, and l are the reaction
one O2 produced for each CO2 fixed. However, this equation orders:
hides the complexity of the gross reactions taking place during
photosynthesis such as photon absorption and electrolysis dSA I dSO
= k1 [H2 O]m [SO ] −
(i.e., light-dependent reaction), carbon assimilation and glu- dt I0 dt
cose production (i.e., Calvin cycle), and decomposition of I dSO
= k1 [H2 O]m ([S] − [SA ]) − (7)
complex nutrients into simpler molecules to provide energy I0 dt
to the cells (i.e., aerobic cellular respiration). dSO p I l
= k2 [CO2 ] [SA ] + k3 [O2 ] [C6 H12 O6 ][SO ]. (8)
Over the years, different mathematical and empirical models dt I0
were proposed for estimating photosynthesis-related quanti-
Considering that the photon absorption is quite fast with
ties [25], [26] and most of them is thought for steady-state
respect to the other involved processes and that in the tested
measurement approaches and requires a wide set of parameters
conditions, all the photosynthetic sites exposed to light can
of difficult estimation [27]. The proposed approach aims to
be assumed active, [SA ] ≃ [S] and [SO ] ≃ 0 hold from
directly describe the kinetics of the chemical reaction involved
which (dSA /dt) ≃ −(dSO /dt) can be derived. Therefore, the
in the photosynthesis, assuming a first order reaction as in [28],
observed dynamic substantially depends on the dynamic of
also based on an a prior coarse analysis of the test results
the nonactive sites and the rate-limiting phenomenon is only
presented in Section III, which display a first-order behavior
due to (8).
during the lighting periods and an approximately zero-order
The total CO2 gas concentration satisfies [CO2 ]tot =
kinetics in the dark periods. By analyzing the process from
[CO2 ]0 −[CO2 ]ph + [CO2 ]resp where [CO2 ]0 is the initial con-
the point of view of the activation and the regeneration of
centration, [CO2 ]ph is the uptake due to photosynthesis, and
the photosynthetic sites, the three chemical reactions in (4)–
[CO2 ]resp is the emission due to cellular respiration. Conse-
(6) can be used to describe the plants activity. Adopting this
quently, (d[CO2 ]tot /dt) = −(d[CO2 ]ph /dt) + (d[CO2 ]resp /dt)
route, the reactions (4) and (5) can be seen as the sequence
holds where (d[CO2 ]ph /dt) and (d[CO2 ]resp /dt) are described
of the photon absorption in a nonactivated photosynthetic
as in (9) and (10)
site (SO ) and the formation of carbon-containing compounds
during the Calvin cycle with the consequent regeneration of d[CO2 ]ph I I
= 6k 2 [CO2 ] p [SA ] = k2∗ [CO2 ] p (9)
the activated site (SA ), whereas (6) indicates the multistep dt I0 I0
cellular respiration. While the first two reactions only occur d[CO2 ]resp
during the periods of light, cellular respiration is involved = 6k 3 [O2 ]l [C6 H12 O6 ][SO ]=k3∗ . (10)
dt
both in the absence and presence of light since it deals with
∗ (λ3 /T)
the vital processes of the cells. These reactions are charac- The rate k3∗ = k03 e incorporates [C6 H12 O6 ], [O2 ]l and
terized by different rates: while photon absorption is quite [SO ], which are assumed constant during the performed tests,
∗ (λ2 /T)
fast, the enzyme-mediated reactions of sites regeneration are while k2∗ = k02 e incorporates [S], under the assumption
slower of [SA ] ≃ [S]. Finally, the kinetics for the CO2 is described
with the following balance equations distinguishing between
k1
12H2 O + SO + light −→ 6O2 + SA (4) light (11) and dark (12) periods
k2
SA + 6CO2 + light −→ C6 H12 O6 + 6H2 O+SO (5) d[CO2 ]light d[CO2 ]ph d[CO2 ]resp
=− + + 8light
k3
C6 H12 O6 + 6O2 −→ 6CO2 + 6H2 O. (6) dt dt dt
p I ∗
= −k2∗ [CO2 ]light + k3−light
k1 , k2 , and k3 are the rate constants defined according to I0
the Arrhenius form as ki = k0i e−(λi /T) i = 1, 2, 3 where k0i
− a [CO2 ]light − [CO2 ]ext (11)
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V. C ONCLUSION
In this article, the possibility of using low-cost IoT solutions
in conjunction with a close accumulation chamber for the
monitoring of the CO2 variations due to plants lifecycle
was investigated as alternative to those professional systems
involving steady-state accumulation chambers and expensive
gas analyzers. The used device was engineered to monitor
other physical quantities which come into play during pho-
tosynthesis such as temperature, pressure, and water vapor
concentration. The achieved results proved the capability of
the proposed system to accurately measure the CO2 and H2 O
alterations induced by plants photosynthesis, paving the way
for the monitoring of vegetation-related CO2 with low-cost
and low-complexity embedded solutions.
In detail, an ad hoc setup was deployed in the laboratory
Fig. 13. Temperature dependence of (a) k2∗ , (b) k3−light ,∗ and (c) k3−dark
∗
housing some plants inside a closed transparent measurement
in the [0 ◦ C, 40 ◦ C] interval, as derived from the fitting routine for test 1; chamber exposed to the light of a horticulture lamp with pro-
in (d) are the previous trends normalized to the maximum value.
grammable intensity, photoperiod, and spectral composition.
The evolution of CO2 concentration, temperature, RH, and
is of several orders of magnitude, hence, given this strong pressure was monitored in quasi-real time (i.e., one sampling
temperature dependence, we foresee very different rates for per minute) both inside the chamber and in the lab room. The
different operating temperatures. The estimated time constant performed experiments were quite simple but anyway allowed
describing the CO2 exchange with the environment outside to test the suitability of the measurement system and to prove
the chamber is a = 1.4·10−5 (1/s), hence for 1[CO2 ] ≃ that the measured variations were actually related to the plants
500 ppm, which is the maximum gradient reached during test1, response. From the measured temporal trends, a preliminary
leakages of 0.007 ppm/s are experienced, corresponding to assessment of mean daily CO2 uptake was found, spanning in
0.16 µmol/(m2 s). The temperature increase boosts the reaction the [62 cm3 (0.12 g), 81 cm3 (0.16 g)] range for test 1 and
while the temperature decrease slows it down. Moreover, in the [75 cm3 (0.16 g), 118 cm3 (0.23 g)] range for test 2.
the rate of [CO2 ] variation due to cellular respiration in the These results also led to the estimation of the mean CO2
presence of light is by far lower than the one experienced uptake per unit of illuminated leaf area in the [0.48 g/m2 ,
during the dark periods. 0.64 g/m2 ] range. Tests were performed for a prolonged period
Note that through the estimation of k2∗ , an assessment of the to prove the usability of the designed system, but in principle,
plant behavior in environmental condition can be obtained by shorter tests could be sufficient to estimate the rates of interest,
using the following equation: thus limiting the possible plant stress or working conditions
different from the realistic ones.
d[CO2 ]light p I
= −k ∗2 [CO2 ]out . (13) A model describing the dynamic of CO2 fluxes was also
dt I0 proposed as a possible tool to reasonably interpret the obtained
Considering an atmospheric CO2 concentration [CO2 ]out = results. It was derived from the photosynthesis stoichiometric
420 ppm [29], T = 20 ◦ C, and I = 150 PPFD, a rate formula and analyzing the chemical mechanisms from the
of CO2 uptake equal to about 0.026 ppm/s can be found, point of view of activation and regeneration of the photo-
corresponding to an uptake rate per unit leaves area of synthetic sites. The model was initially calibrated on the
0.259 mg/(m2 s) or to 0.576 µmol/(m2 s). Using (13), under first three days of tests and then validated on the remaining
intense radiation I = 2000 PPFD, an uptake of CO2 data using a nonlinear fitting routine and achieving maximum
of about 0.348 ppm/s can be predicted, corresponding to error of about 50 and 75 ppm in calibration and valida-
3.453 mg/(m2 s) or 7.68 µmol/(m2 s) for unit leaf area. Con- tion, respectively, for Test 2. The capability of the model
cerning the rate of CO2 release because of cellular respiration, to interpret the measured data was proven and preliminary
a value of about 0.008 ppm/s can be derived, corresponding estimate of CO2 absorption and release rates were provided
to a respiration rate per unit leaves area of 0.008 mg/(m2 s) achieving an uptake rate for unit leaf area of ∼8 µmol/(m2 s)
or to 0.182 µmol/(m2 s). Thus, a positive balance in the CO2 and a release rate per unit leaf area of 0.182 µmol/(m2 s)
exchange fluxes between uptake and respiration is proved. under the conditions [CO2 ]out = 420 ppm, T = 20 ◦ C,
Despite an uncertainty in the order of 20% in the estimation and I = 2000 PPFD.
of the illuminated leaf area can be present, the results are Future activities may concern the refinement of the model,
consistent with those existing in the literature. For example for example foreseeing a thermostatic system, to evaluate
in [15], a CO2 uptake in the [0.140 mg/(m2 s), 0.695 mg/(m2 s)] its accuracy in case of temperatures different from those
range is found for an olive tree exposed to solar radiation tested. This possibility was not accounted during the presented
from 0 to 800 W/m2 , while in [13], a maximum photosynthesis measurement campaigns since the preliminary goal of the
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5500711 IEEE TRANSACTIONS ON INSTRUMENTATION AND MEASUREMENT, VOL. 74, 2025
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sensor,” IEEE Trans. Instrum. Meas., vol. 73, pp. 1–9, 2024. degree in electronics and communication engineer-
[10] M. Mauder, T. Foken, M. Aubinet, and A. Ibrom, “Eddy-covariance ing and the Ph.D. degree in information engineering
measurements,” in Springer Handbook of Atmospheric Measurements. and science from the University of Siena, Siena,
Cham, Switzerland: Springer, 2021. Italy, in 2019 and 2023, respectively.
[11] N. Salvatori, A. Giorgio, O. Müller, U. Rascher, and A. Peressotti, She is currently a Research Fellow with the
“A low-cost automated growth chamber system for continuous measure- Department of Information Engineering and Math-
ments of gas exchange at canopy scale in dynamic conditions,” Plant ematics, University of Siena. Her current research
Methods, vol. 17, no. 1, pp. 1–11, Dec. 2021. interests include the design of low-power measure-
[12] K. Nomura et al., “Long-term and continuous measurement of canopy ment systems and energy-autonomous the Internet
photosynthesis and growth of spinach,” Environ. Control Biol., vol. 58, of Things (IoT) systems for gas and environmental
no. 2, pp. 21–29, 2020. monitoring.
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CAPPELLI et al.: IoT SYSTEM FOR MEASUREMENT AND INTERPRETATION OF PHOTOSYNTHESIS-RELATED CO2 FLUXES 5500711
Lorenzo Parri (Member, IEEE) received the M.Sc. Valerio Vignoli (Member, IEEE) received the
degree in electronics and communications engineer- Laurea degree in electronic engineering and
ing and the Ph.D. degree in information engineering the Ph.D. degree in nondestructive testing from
and science from the University of Siena, Siena, the University of Florence, Florence, Italy, in 1989
Italy, in 2017 and 2021, respectively. and 1994, respectively.
He is currently a Research Fellow with the He is currently a Full Professor of electronics
Department of Information Engineering and Math- with the Department of Information Engineering
ematics, University of Siena. His current research and Mathematical Sciences, University of Siena,
interests include the design of gas measurement Siena, Italy. His research interests include the design
systems, electronic systems for industrial application of data acquisition and processing systems based
and condition monitoring, the design of embedded on chemical sensors and the design of analog and
microcontroller-based devices, and the development of sensor networks. mixed-signal electronic circuits.
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