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Advances in
CANCER
RESEARCH
Volume 112
Intratumor Diversity and
Clonal Evolution in Cancer
Advances in
CANCER
RESEARCH
Volume 112
Paul B. Fisher
Department of Human & Molecular
Genetics, VCU Institute of Molecular Medicine
Richmond, Virginia, USA
Academic Press is an imprint of Elsevier
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verification of diagnoses and drug dosages should be made.
ISBN: 978-0-12-387688-1
ISSN: 0065-230X
11 12 13 14 10 9 8 7 6 5 4 3 2 1
Contributors
Numbers in parentheses indicate the pages on which the authors’ contributions begin.
ix
x Contributors
I. Introduction
A. Is Intratumor Diversity a Feature of All Neoplasms?
B. To What Extent Does Genomic Instability Lead to Genomic Intercellular Diversity?
C. To What Extent Does Genetic Variation Correspond to Phenotypic Variation?
D. Is genomic Instability a Self-Sustaining Process?
E. Do Diverse Tumor Cell Populations Always Stem from a Single Cell?
Acknowledgment
References
I. INTRODUCTION
[(Fig._1)TD$IG]
Fig. 1 A simplified model connecting genomic instability and clonal evolution in cancer.
There are several crucial points in need of clarification in this process, including: What is the
primary generator of genomic diversity—an increased mutation rate or an increased cellular
tolerance for mutations? Is genomic instability self-sustaining, for example through aneuploidy
giving rise to dysregulation of mitotic checkpoints, resulting in further aneuploidy? Which of the
described mechanisms for genomic instability are compatible with clonogenic survival? Which
of the genetic alterations brought about by genomic instability do in fact result in an altered
cellular phenotype through an altered gene expression? What microenvironmental selective
forces guide the selection and clonal expansion of phenotypically different cells? And, finally, is
the process a result of clonal expansion from one or several founder cells? See text for details.
(For color version of this figure, the reader is referred to the web version of this book.)
4 David Gisselsson
ACKNOWLEDGMENT
Grant sponsors: Swedish Childhood Cancer Foundation, Swedish Cancer Society, Swedish
Research Council, Crafoord Foundation, Gunnar Nilsson Cancer Foundation, the Royal
Physiographic Society, and the Medical Faculty at Lund University.
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express a mutator phenotype. Proc. Natl Acad. Sci. U.S.A. 103, 18238–18242.
Chaffer, C. L., Brueckmann, I., Scheel, C., Kaestli, A. J., Wiggins, P. A., Rodrigues, L. O.,
Brooks, M., Reinhardt, F., Su, Y., Polyak, K., Arendt, L. M., Kuperwasser, C., Bierie, B.,
8 David Gisselsson
and Weinberg, R. A. (2011). Normal and neoplastic nonstem cells can spontaneously
convert to a stem-like state. Proc. Natl Acad. Sci. U.S.A. 108, 7950–7955.
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Cancer Genet. Cytogenet. 119, 83–93.
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Ganem, N. J., Godinho, S. A., and Pellman, D. (2009). A mechanism linking extra centro-
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Gisselsson, D., Jin, Y., Lindgren, D., Persson, J., Gisselsson, L., Hanks, S., Sehic, D.,
Mengelbier, L. H., Ora, I., Rahman, N., Mertens, F., Mitelman, F., and Mandahl, N.
(2010). Generation of trisomies in cancer cells by multipolar mitosis and incomplete
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23, 81–99.
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in tumors of the breast. Cancer Genet. Cytogenet. 95, 16–19.
Holmquist Mengelbier, L., Lindgren, D., Øra, I., Isaksson, M., Frigyesi, I., Frigyesi, A., Bras,
J., Sandstedt, B., and Gisselsson, D. (2010). Deletions of 16q in Wilms tumors localize to
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Intratumor Diversity and Clonal Evolution in Cancer—A Skeptical Standpoint 9
I. Introduction
II. Chromosome End Protection: The Shelterin Complex
III. Telomere Maintenance, Cell Proliferation, and Telomere Uncapping
A. Telomere length declines with cell divisions in most cells
B. Telomere dysfunction triggers the dna damage response
IV. Telomeres, checkpoints, and cancer
A. When telomeres are too short, lessons from mice
B. Cancer arises when cell-cycle checkpoint defects accompany short telomeres
V. Telomere Uncapping as a Source of Genomic Instability
A. Telomere lengths are highly heterogeneous within somatic cells
B. Initiation of breakage-fusion-bridge cycles by dysfunctional telomeres
C. Missegregation of anaphase-bridged chromatin generates aneuploid cell
populations
D. Telomere uncapping also fuels changes in cell ploidy
VI. Shortening Telomeres in Aged Human Cells
A. Telomere attrition occurs in epithelial compartments
B. Does tumor suppressor gene expression also decline with age?
C. Bfb-intermediates and short telomeres in early preneoplastic lesions
D. Toward a malignant phenotype
VII. Summary
Acknowledgments
References
Most solid tumors are unable to maintain the stability of their genomes at the
chromosome level. Indeed, cancer cells display highly rearranged karyotypes con-
taining translocations, amplifications, deletions, and gains and losses of whole
chromosomes, which reshuffle steadily. This chromosomal instability most likely
occurs early in the development of cancer, and may represent an important step in
promoting the multiple genetic changes required for the initiation and/or progres-
sion of the disease. Different mechanisms may underlie chromosome instability in
cancer cells, but a prominent role for telomeres, the tip of linear chromosomes, has
I. INTRODUCTION
[(Fig._1)TD$IG]
the end structure of the chromosome terminus and provided a new vision
of how the protective function of the telomere is achieved. Modeling of the
linear telomeric track into a loop physically hides the chromosome ends
from inappropriate DNA damage responses (DDRs).
In addition to structural functions, shelterin proteins can also regulate
the telomere length by controlling the accessibility of telomeres for telo-
merase—the enzyme that synthesizes telomeres de novo. Telomerase does
not act on every telomere in each cell cycle but instead exhibits an increas-
ing preference for telomeres as their length declines (Teixeira et al., 2004).
Thus, it was proposed that availability for telomerase elongation would
probably depend on the amount of shelterin on the telomere track (Lei
et al., 2004; Loayza et al., 2004). In this regard, a model where the
telomere alternates between an open and closed state has been proposed.
In this model, the switch for the conformational change depends on the
likelihood that POT1 components can position themselves on the 30 ter-
minus, through TPP1 interactions (de Lange, 2005).
Although telomeres accommodate a core of six proteins that coat and
shape chromosome ends ensuring their integrity, telomeric proteome stud-
ies have listed a plethora of other proteins associated with mammalian
telomeres (Dejardin and Kingston, 2009) that might also influence chro-
mosome end protection and dynamics. Importantly, some of them func-
tion in DNA damage signaling and repair such as the MRN complex—
composed of MRE11, RAD50 and NBS1-, DNA-PKcs, ATM, or ATR. In
telomeres, these proteins are required for efficient replication and proper
trimming-processing of extremities after replication, and help in double-
strand invasion to form the D-loop structure (Verdun and Karlseder,
2007; Gilson and Geli, 2007).
[(Fig._2)TD$IG]
Given that loss of telomere repeats has been implicated in both tumor-
igenesis and the aging process, great efforts have been made to measure in
human cells and model organisms the minimal length required for a
functional telomere, as this could be a biomarker forecasting an indivi-
dual’s longevity and risk of disease (Cawthon et al., 2003).
[(Fig._3)TD$IG]
(A) Sister chromatid fusion generates a continuous DNA molecule that always bridges at
anaphase. (1) Resolution of the bridge through breakage would lead to inverted repeats
(yellow triangles) on the end of a chromosome in a daughter cell and a deletion (Del) in
the other. These chromosome aberrations are again susceptible to reorganize, leading to
nonreciprocal translocations (NRT) or new dicentric chromosomes. While the forma-
tion of a NRT avoids further instability, the new dicentric may bridge again at anaphase,
thus perpetuating chromosome instability. (2) Anaphase bridges may also erroneously
segregate chromosomes between daughter cells. This results in the formation of aneu-
ploid cells. Whereas the loss of a chromosome results in a real hypodiploid progeny, the
gain of an unstable chromosome will produce a broad range of abnormalities since it can
reorganize further.
(B) Fusion of chromosomes before the S-phase results in conventional interchromosome
dicentrics, which will bridge at anaphase only if a twist between the two centromeres is
produced. The two bridged dicentric chromatids can either break or missegregate. (1)
Rather than amplification events, breakage of both chromatids generates partial gains
and losses in the daughter cells. Again, the broken extremities can further reorganize in
the form of stable or unstable aberrations, and consequently new BFB cycles can be
initiated. (2) In the case that one dicentric chromatid breaks and the other missegregates,
partial and whole chromosome losses and gains will be produced. Eventually, a hypo-
diploid clone of cells will emerge after proliferation of the monosomic cell, whereas the
gained dicentric could re-enter into the BFB cycle.
(C) Persistent telomere damage can induce bypass of mitosis and re-entry into S-phase,
resulting in a tetraploid cell.
(D) Tetraploidization mediated by telomere dysfunction might also be produced by persis-
tent chromatin bridges during mitosis. The presence of chromatin at the cleavage plane
could induce furrow regression and cytokinesis failure, eventually leading to tetraploid
cells.
26 Anna Genesc
a et al.
[(Fig._3)TD$IG]
Fig. 3 (Cont.) (See Page 4 in Color Section at the back of the book.)
[(Fig._4)TD$IG]
p21CIP1 and p16INK4a, are frequently disrupted (Gemma, 2002). This high-
lights the possibility that many more mutations could contribute to faulty
cell-cycle checkpoints with age. Or, in other words, that advancing age
could contribute to an environment more permissive for carcinogenesis.
VII. SUMMARY
Accumulated data support the notion that loss of telomere repeats con-
tributes to human carcinogenesis; however, the nature of this link remains
elusive. It is not an easy issue to demonstrate, since telomere-driven insta-
bility should occur early in the neoplastic process and the subsequent
derivation of the genome would mask telomere-dysfunctional traces.
However, evidence from model organisms, human in vitro cell systems,
and tissue samples has revealed the existence of scars that denote the flow
through a state of telomere instability.
The physiological shortening of telomeres with age in human tissues
may detonate CIN through anaphase bridge intermediates when
uncapped chromosomes fuse with each other. Massive remodeling and
scrambling of the genome, in proliferating cells, is then achieved through
repeated BFB cycles of unstable chromosomes resulting from the joining of
both initially broken chromosomes and those that later became unpro-
tected. As a result, telomere dysfunction serves as a generator of genomic
instability where an arbitrary pattern of structural, numerical and
ploidy abnormalities can occur. Adding more complexity to the ongoing
telomere-driven instability, the presence of merotelic attachments in
polyploid cells, may further increase chromosome missegregation in
an already reorganized genome. Thus, telomere-driven genome instabil-
ity could well be one of the sources leading to a hypermutable hetero-
geneous genome prone to accumulating the genetic changes that drive
cells into malignity.
34 Anna Genesc
a et al.
ACKNOWLEDGMENTS
Research in the Tusell lab is supported by grants from the Consejo de Seguridad Nuclear;
Instituto de Salud Carlos III (RD06/0020/1020) and the Generalitat de Catalunya
(2009SGR-282).
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How Mitotic Errors Contribute to
Karyotypic Diversity in Cancer
Joshua M. Nicholson and Daniela Cimini
Department of Biological Sciences, Virginia Tech,
Blacksburg, VA, USA
I. Introduction
II. Intratumor Diversity at the Karyotypic Level
A. Preneoplastic aneuploidy
B. The Effects of aneuploidy
C. Chromosome instability and the cancer karyotype: between order and disorder
III. How Mitotic Errors Contribute to the Karyotypic Diversity of Cancer Cells
A. Kinetochore–microtubule attachments
B. Spindle assembly checkpoint (SAC)
C. Multipolarity and spindle geometry
D. Microtubule dynamics
E. Polyploidization
IV. Conclusion
Acknowledgments
References
I. INTRODUCTION
drug resistance. While seemingly chaotic per cell, the tumor as a whole is
much like a mosaic displaying interdependency and organization. For this
reason it has been called a species (Duesberg and Rasnick, 2000; Duesberg
et al., 2011; Huxley, 1956; Klein et al., 2010; Van Valen and Maiorana,
1991; Vincent, 2010), a society of cells (Heppner, 1984), and a complex
ecosystem (Heppner, 1984; Merlo et al., 2006; Sachs and Hlatky, 2010).
Whereas it is likely that a myriad of mechanisms contribute to cancer
complexity, in this chapter we specifically focus on how mitotic defects
contribute to the complexity of the cancer cell karyotype. It has long been
known that cancer cells are characterized by aneuploid karyotypes
(Bayreuther and Klein, 1958; Chu and Giles, 1958; Hauschka and
Levan, 1958), and an increasing body of work has unveiled a causal
relationship between aneuploidy and tumorigenesis [reviewed in
(Cimini, 2008; Pavelka et al., 2010a; Sen, 2000)]. A key role of aneuploidy
in tumorigenesis and tumor progression is also indicated by the fact that
measuring DNA indices or ploidy is clinically informative as a prognostic
indicator in various cancers (Atkin and Kay, 1979). For instance, ploidy
measurements in different types of cancer (Frankfurt et al., 1985; Grote
et al., 2001; Jakobsen, 1984; Jakobsen et al., 1988; Kallioniemi et al.,
1987; Susini et al., 2011) are as, if not more, accurate when predicting
survival than other widely used measures such as the prostate-specific
antigen (PSA) test (Stamey, 2004; Vickers et al., 2011).
Karyotypic analysis also indicates that there is wide variability in the
chromosome number within the same cancer cell population, suggesting
that errors in mitotic chromosome segregation are recurrent in cancer
cells. In the remaining part of this chapter, we will start by reviewing what
is known about intratumor karyotypic diversity. Next, we will describe
the mitotic mechanisms that promote chromosome mis-segregation in
cancer cells, and thus can produce karyotypic diversity.
A. Preneoplastic Aneuploidy
Aneuploidy is ubiquitous in cancer (Gebhart and Liehr, 2000;
Mertens et al., 1997; Mitelman et al., 2011; Weaver and Cleveland,
2006), and was proposed to have a causal role in cancer already over a
century ago (Boveri, 1902, 1914). Over the years, the idea that aneu-
ploidy plays a causal role in the origin of cancer has been supported by
substantial experimental evidence. For example, random aneuploidy
How Mitotic Errors Contribute to Karyotypic Diversity in Cancer 45
We all laughed.
Mrs Anson, for once, did not agree with this sweeping
condemnation, while Mabel declared that she always
enjoyed the fun of the battles of flowers and paper confetti,
although she admitted that she had never had the courage
to go out on those days when the pellets of lime, or “harp
confetti,” are permitted. Both Hickman and myself
supported Mabel in defence of the annual fêtes at Nice as
being unique in all the world.
“So, so. One season I won five thousand francs. In fact, I’ve
never lost on the whole season. I’ve always left the Riviera
with some of the bank’s money.”
Upon that very couch I had reclined while the foul tragedy
had been enacted in that room. My head swam; I closed my
eyes. The great gilt clock, with its pendulum representing
the figure of a girl swinging beneath the trees, standing on
the mantelshelf, ticked out low and musically, just as it had
done on that fateful night. In an instant, as I sat with head
turned from my companions and my eyes shut, the whole of
that tragic scene was re-enacted. I heard the crash, the
woman’s scream, the awe-stricken exclamation that
followed in the inner room. I heard, too, the low swish of a
woman’s skirts, the heavy blow struck by an assassin’s
hand, and in horror felt the warm life-blood of the unknown
victim as it trickled upon my hand.
Mabel suddenly ran her white fingers over the keys, and the
music brought me back to a realisation of my true position.
I had at length discovered the actual house in which the
mysterious tragedy had been enacted, and it became
impressed upon me that by the exercise of greatest care I
might further be enabled to prosecute secret investigations
to a successful issue, and at length solve the enigma.
At the end of the room, too, were the folding doors, now
concealed by curtains. It was through those very doors that
Edna, my mysterious protectress, had passed and repassed
to that inner room whence had come the sound of
champagne being uncorked and the woman’s piercing
scream.
As she gossiped with me, now and then waving her big
feather fan, she conveyed to my mind an impression of
extreme simplicity in the midst of the most wonderful
complexity. She seemed to take the peculiar traits from
many characters, and so mingle them that, like the
combination of hues in a sunbeam, the effect was as one to
the eye. I had studied her carefully each time we had met,
and had found that she had something of the romantic
enthusiasm of a Juliet, of the truth and constancy of a
Helen, of the dignified purity of an Isabel, of the tender
sweetness of a Viola, of the self-possession and intellect of
a Portia—combined together so equally and so
harmoniously that I could scarcely say that one quality
predominated over the other. Her dignity was imposing, and
stood rather upon the defensive; her submission, though
unbounded, was not passive, and thus she stood wholly
distinct in her sweetness from any woman I had ever met.
The following day was one on which she was due to take
her music-lesson, and I inquired whether I might, as usual,
meet her and escort her across the Park.
“You are really very kind,” she responded; “but I fear I take
up far too much of your time.”
“But you’ll write and tell me when you are free?” I urged
earnestly.
All the time I was longing to get a sight of the interior of the
adjoining apartment, the room whence had burst forth that
woman’s agonised cry in the stillness of the night. I racked
my brain to find some means of entering there, but could
devise none. A guest can hardly wander over his hostess’s
house on the first occasion he receives an invitation.
Besides, to betray any interest in the house might, I
reflected, arouse some suspicion. To be successful in these
inquiries would necessitate the most extreme caution.
The gilt clock with its swinging girl had already struck
eleven on its silver bell, and been re-echoed by another
clock in the hall playing the Westminster chimes, when
suddenly Mrs Anson, with a book in her hand, looked across
to her daughter, saying—
“The library is the next room, there. You’ll find them on the
writing-table. Mother always leaves them there. It’s really
too bad to thus make a servant of you. I’ll ring for Arnold.”
“No, no,” I protested, and at once went eagerly in search of
them.
Chapter Sixteen.
The Inner Room.
The glasses were, as Mrs Anson had said, lying beside the
blotting-pad upon a small rosewood writing-table. I took
them up, and, having made a tour of inspection, was about
to leave the place, when suddenly, on the top of some
books upon a shelf close to the door, I espied a small
volume.
“Your mother tells me that you have a box for the Prince of
Wales’s on Saturday night, and has asked me to join you,” I
said. Her eyes brightened, and I saw that she was delighted
at the prospect. But she expressed a hope that I wouldn’t
be bored.
The night was bright and starlit, and the air refreshing.
Turning to the left after leaving the house, we came
immediately to a road which gave entrance to that secluded
oval called The Boltons. I looked at the name-plate, and
saw it was named Gilston Road. It must have been at this
corner that I had been knocked down by a passing cab
when, on my first adventurous journey alone, I had
wandered so far westward.
“Excellent.”
“Who were the men with whom she had the minor love-
affairs—any one I know?” I inquired.
“I think not, because it all occurred before they returned to
live in England,” he answered.
We had passed from the Fulham Road into the King’s Road,
Chelsea, and at that moment he halted suddenly at the
corner of a street of high, regularly built houses, most of
which were in darkness, saying—“I live down here. Come in
and have a final whisky and soda with me; then you can
take a cab back to the Strand. There are cabs all night on
the rank in Sloane Square.”
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