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Machine Learning and Glasgow Coma Scale

This document discusses using machine learning and SNOMED CT to improve the Glasgow Coma Scale assessment of impaired consciousness. It describes how SNOMED CT currently represents components of the Glasgow Coma Scale as primitives without full definitions. Defining the observables using the SNOMED CT Observable concept model provides richer metadata that supports machine learning by fully characterizing clinical observations and assessment results. This enhanced representation of assessment data in SNOMED CT could improve analytics and clinical decision support.

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James Lagamayo Javier
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46 views

Machine Learning and Glasgow Coma Scale

This document discusses using machine learning and SNOMED CT to improve the Glasgow Coma Scale assessment of impaired consciousness. It describes how SNOMED CT currently represents components of the Glasgow Coma Scale as primitives without full definitions. Defining the observables using the SNOMED CT Observable concept model provides richer metadata that supports machine learning by fully characterizing clinical observations and assessment results. This enhanced representation of assessment data in SNOMED CT could improve analytics and clinical decision support.

Uploaded by

James Lagamayo Javier
Copyright
© © All Rights Reserved
Available Formats
Download as PPTX, PDF, TXT or read online on Scribd
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Machine Learning and

SNOMED CT: Building a


better Glasgow Coma
Scale
James Campbell MD
University of Nebraska Medical Center
Machine Learning
 Analyzes data sets looking for relationships
between data elements that may represent
new knowledge
 Unsupervised ML on unstructured data such
as free text reports requires much larger
training sets and extensive
curation/interpretation of results
 Well structured (codified) data sets with
good metadata (domain ontologies defining
dataset semantics) are better suited to
unsupervised ML; that is also true for
analytics and decision support applications
Glasgow Coma Scale in
SNOMED CT Currently
 14 Clinical finding primitives; “Glasgow coma scale;
10” IS_A “Glasgow coma scale finding”;(EHR
Problem list or Encounter diagnosis)
 6 Observable primitives; “Glasgow coma score” IS_A
“Component of Glasgow coma scale ”;(Clinical
observation results)
 1 Assessment scale; “Glasgow coma scale”
 Since the findings and observables are all primitive,
SNOMED CT concept model contributes only the
codification and the IS_A relationship from the
definition to metadata which might support machine
learning
Nebraska Data Frequency:
Glasgow Coma Scale
Glasgow Coma Scale
 Glasgow Coma Scale
 The Scale was described in 1974 by Graham
Teasdale and Bryan Jennett as a way to
communicate about the level of consciousness of
patients with an acute brain injury.
 Assessment of coma and impaired
consciousness. A practical scale. Lancet 1974;
2:81-4.
 Teasdale G, Maas A, Lecky F et al. The Glasgow
Coma Scale at 40 Years: standing the test of
time. Lancet Neurology 2014 ;13(8) : 844-854
Glasgow Coma Scale

Opening and control of eye movements in response


To verbal request

Response to questioning “Where are you now? What


is your name? What is today’s date?”

Response to request to move arms and legs; followed


By escalating painful stimulus if no purposeful
Response.
Glasgow Coma Scale: Fully defining
the observables at Nebraska Medicine
 Since the GCS quantifies the results of a series
of observations on the patient responsiveness
and neurologic control, it is best defined with the
Observable PROCESS template
 INHERES_IN = Organ system function observed
 CHARACTERIZES = Physiologic process being
assessed
 PROPERTY = What feature of the process is
being assessed?
 TECHNIQUE = 386554004|Glasgow coma scale
(assessment scale)|
GCS new attribute definitions
Process (qualifier) Property (qualifier)
PROCESS Observable:
Glasgow coma score verbal
subscore (observable entity)

Observation result:
• Assessing the patient Central Nervous System
• Characterizing orientation and verbalization
• How well orientation/verbalization are working
• Employing techniques of Glasgow Coma Scale
• Recorded as semiquantitative ordinal scale
PROCESS Observable:
Glasgow coma score verbal
subscore (observable entity)

Think of this as the ontologic definition (metadata)


In the EHR for what this piece of data is about!

Machine learning, here we come!


PROCESS Observable:
24824002|Glasgow coma score motor
response subscore (observable entity)
PROCESS Observable:
24824002|Glasgow coma score eye
opening subscore (observable entity)
PROCESS Observable:
24824002|Glasgow coma score
(observable entity)
GCS Clinical findings
Results in the EHR
 Some of these data are only stored in notes in some
EHR systems. (Machine learning further complicated
there…)
 At Nebraska Medicine and in many US EHRs, these
types of findings data are recorded as text/numbers in
flowsheets or similar data entry forms integrated into
the workflow management of the clinician and stored
accordingly as Observable-Result pairs
 The findings of a particular event are retrieved and
organized in the encounter summary for clinical review
 The pre-coordinated Clinical findings are only recorded
in the event that a clinician wants to place the finding
on the Problem list or in an Encounter diagnosis
Nebraska Data Frequency:
Glasgow Coma Scale
Observable entities can be employed in the
concept model to fully define the
associated Clinical findings:
32856008|Glasgow coma scale, 8 (finding)|

Precoordinating the results data into the Clinical finding


obfuscates the meaning of the finding since the definition
of WHAT is being measured and HOW it is recorded is
buried in the Observable entity one layer deeper. The
Clinical findings concept model has no further features
of use to support full semantic interoperability and the
ontologic definition of the data.
For building a machine learning
dataset;Do we have any other
examination results for items such as
motor exam after stimulus?

<<363787002|Observable entity (observable entity)|:


{704321009|Characterizes (attribute)| = <<563201000004106|Neurological motor process (qualifier)| },
{704326004|Precondition (attribute)| = 573721000004104|After applying painful stimulus (qualifier value)|}

SNCTID FSN
281396004 Glasgow coma score motor response subscore
573671000004109 Right upper extremity motor response to stimuli
573681000004107 Left upper extremity motor response to stimuli
Meanwhile, in Neurology…
General Neurological Assessment
Neurology General Assessment:
LUE Motor Response to Stimuli
(observable)
Neurology General Assessment:
RUE Motor response to stimuli
(observable)
ML: Motor examination aka
Glasgow Coma Scale
 In order to best support machine learning and
analytics, SNOMED CT needs to fully define
primitives (CF, Obs, Procs, Meds)
 In this thought experiment, the Observables
concept model allows us to build robust metadata
for the results of the neurologic examination and
assessment scales in support of ML
 These data may be recorded as fully defined
Clinical findings or as Observation results but the
analytics procedures are simpler if we use the latter
 In US EHRs, tons of clinical results data are being
recorded as we speak but the metadata is literally
primitive

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