Enzymes Lect
Enzymes Lect
Universities
Enz ymes- Specific Learning Objectives
(1)define enzyme, active site, substrate.
(2)classify enzymes with suitable examples using IUB
classification.
(3)explain the role of coenzymes in enzyme action with
suitable examples
(4)explain the functions of coenzymes with suitable
examples
(5)enumerate various cofactors required in metabolic
reactions
(6)Explain the mechanism of enzyme action
(7)Explain the Regulation of Enzyme Activity
(8)Enzyme Inhibition
(9)explain isoenzymes with their salient features
ENZYMES
Enzymes are biocatalysts that
increase the velocity of a
chemical reaction and are
neither consumed nor changed
during the reaction.
Enzymes as catalysts
• Catalyst - Speeds up
chemical reactions in
living organisms by
decreasing the energy Without a catalyst
Time
Definitions
Active Site
The small cleft- like portion of an enzyme where the
substrate(s) binds and catalysis occurs is known as the
active site or active centre.
A diagrammatic representation of
an enzyme and its active site
Metal Enyzmes
Cu2+ CytochromeC oxidase, Cerruloplasmin, SOD
NADHperoxidase
UDP-hexose-4-epimerase
UDP-glucose UDP-galactose
Phosphohexose isomerase
D-glucose-6-phosphate D-fructose-6-phosphate
6-Ligase
• Ligases catalyze a reaction in which formation of C-
C, C-S, C-O, or C-N bond coupled to hydrolysis of
ATP. Pyruvate carboxylase
Pyruvate + CO2+ATP Oxaloacetate+ADP+Pi
Carbamoyl phosphate synthase I
Ammonia+CO2+2ATP Carbamoyl phosphate
+2ADP+Pi
Nomenclature of Enzymes
• In most cases, enzyme names end in –ase
• The name of an enzyme identifies the reacting substance. For example,
– Urea: remove -a, replace with -ase = urease
– Lactose: remove -ose, replace with -ase = lactase
– sucrase catalyzes the hydrolysis of sucrose
• The name also describes the function of the enzyme For example,
- oxidases catalyze oxidation reactions
- Hydrolase
• Some enzymes are named for the substrate and the function. For
example,
– Lactate dehydrogenase
– Pyruvate decarboxylase
– Alcohol dehydrogenase
• Some names are historical - no direct relationship to substrate or
reaction type
– Catalase
– Pepsin
– Chymotrypsin
–
Mechanism of Enzyme Action
• Enzyme binds to the substrate and form an
enzyme-substrate(ES) complex.
Substrate is bound
through multiple
non-covalent
bonds at the
active site.
Active site
• The region of the enzyme combine with the
substrate .
• Active sites characteristics include:
– Pockets or clefts in the surface of the enzyme.
– R groups at active site are called catalytic groups.
– The active site contains amino acid side chains that create a
three-dimensional surface complimentary to the shape of
the substrate.
– The enzyme attracts and holds the enzyme using weak non-
covalent interactions (H-bonding, hydrophobic
interactions).
– Conformation of the active site determines the specificity of
the enzyme.
– Products are released when the reaction is complete (they
no longer fit well in the active site)
Fischer Template Model (Lock and Key Model)
• This is a rigid model of catalytic site, proposed by Emil Fischer in
1894.
• In the lock-and-key model, the enzyme is assumed to be the lock
and the substrate the key
– The active site has a rigid shape
– Only substrates with the matching shape can fit
– The enzyme and substrate are made to fit exactly
– This model fails to explain change in enzyme structure in the presence
of allosteric modulators.
Lock and Key Model
Two substrates
Enzyme
Enzyme
Chemical reaction!!!
Enzyme
Basic Enzyme Diagram
The substrates have
reacted and changed
into the product
Enzyme is unchanged
Active site
Induced Fit Enzyme Model
• Koshland proposed an induced-fit model in 1963.
-The active site is flexible, not rigid
- the shapes of the enzyme, active site, and substrate adjust
to maximize the fit, which improves catalysis
- there is a greater range of substrate specificity
• This model is more consistent with a wider range of enzymes
How does the enzyme promote a faster
chemical reaction?
– As the substrate interacts with the enzyme, its shape
changes and this new shape is less energetically stable
– This transition state has features of both substrate and
product and falls apart to yield product, which
dissociates from the enzyme
Possible Types of Transition State Changes
Bell shaped
Majority of curve
enzymes
completely
lost their
catalytic
activity at
about >70⁰C.
pH and Enzyme Activity
• Enzymes are most active at optimum pH
• Amino acids with acidic or basic side-chains have the proper
charges when the pH is optimum
• Activity is lost at low or high pH as tertiary structure is disrupted
SUBSTRATE PRODUCT
SUBSTRATE × PRODUCT
ENZYME KINETIC
• At a fixed enzyme concentration, reaction velocity (V) of an
enzyme-catalyzed reaction increases with rise in substrate
concentration (S) until a maximal velocity (Vmax) is attained.
• Most enzymes show hyperbolic curve when reaction velocity is
plotted against substrate concentration.
A- at low substrate Hyperbolic curve
C
concentration, reaction
B
velocity increase linearly with
S.
B- at high substrate
concentration, velocity is
A
increase but not directly
proportional to S.
C- Vmax is attained ,rise in S
does not further increase the
reaction.
MICHAELIS-MENTEN EQUATION
• Michaelis and Menten proposed a model 1913.
• To explain kinetic features of enzyme-catalyzed reactions.
• In this model, the enzyme reversibly combines with its substrate
to form an ES complex that subsequently breaks down to product,
regenerating the free enzyme.
• Michaelis-Menten equation
E + S ES E + P
E + I EI no P formed
Classify enzyme inhibitors on the basis of reversibility
Therefore amethopterin
and aminopterin used in
cancer to suppress cell
division
Physostigmine and neostigmine
•Di-isopropylphosphofluoride DIPF
Inhibit trypsin, chymotrypsin,
elastase and phosphoglucomutase
3. Suicide inhibitor:-
• The inhibitor binds to the active site where it is
modified by the enzyme to produce a reactive group
that reacts irreversibly to form a stable inhibitor-
enzyme complex.
• Some clinical examples of suicide inhibitors include:
• Aspirin, which inhibits cycloxygenase 1 and 2 enzymes.
• Penicillin, which inhibits DD-transpeptidase from building bacterial
cell walls.
• Allopurinol, which inhibits uric acid production by xanthine oxidase
in the treatment of gout.
• Azidothymidine and other chain-terminating nucleoside analogues
used to inhibit HIV-1 reverse transcriptase in the treatment of
HIV/AIDS.
• Sarin is a suicide inhibitor of acetylcholinesterase.
• 5-fluorouracil acts as a suicide inhibitor of thymidylate synthase
during the synthesis of thymine from uridine. This is often used in
combination with Methotrexate, a potent inhibitor of dihydrofolate
reductase enzyme.
• Exemestane, a drug used in the treatment of breast cancer, is an
inhibitor of the aromatase enzyme.
Regulation of Enzyme Activity
One of the major ways that enzymes differ from
non-biological catalysts is in the regulation of
biological catalysts by cells
Enzyme quantity – regulation of gene expression
(Response time = minutes to hours)
a) Transcription(RNA made)
b) Translation (protein made)
c) Enzyme turnover
Enzyme activity (rapid response time = fraction of
seconds)
d) Allosteric regulation
e) Covalent modification
f) Proteolytic cleavage of proenzyme
Allosteric Regulation
• Allosteric enzymes are regulated by molecules called
effectors (modifiers or modulators).
• It bind non-covalently at a second site (site other than
the active site).
• All allosteric effector can alter the affinity of the enzyme
for its substrate.
• Inhibit enzyme activity -----negative effectors.
• Increase enzyme activity-----positive effectors.
– Some effectors speed up enzyme action (positive allosterism)
– Some effectors slow enzyme action (negative allosterism)
Feedback Inhibition
• In some pathway , end product inhibits the regulatory
enzyme of the pathway to regulate its own synthesis,
called feedback inhibition.
Cytidine
triphosphate Cholesterol
(CTP)
Biosynthesis of pyrimidine
Biosynthesis of cholesterol
nucleotides
Regulation of Enzyme Activity by
Covalent Modifications
• Usually regulatory enzymes are covalent modified
by their phosphorylation & dephosphorylation.
• Its catalyzed cyclic AMP dependent protein kinase
and phospho-protein phosphatase.
• A phosphate is transferred from an activated donor
(usually ATP) to an amino acid on the regulatory
enzyme
CHAPTER 7
Skeletal
CK-3 MM muscle, myopathies
Myocardium
Alkaline phosphatase (ALP):-
Six isoenzymes
• Increased ALP
levels are most
commonly
associated with
bone disease and
hepatobiliar
y disease.
Alcohal dehydrogenase (ADH):-
Two hetero dimer
American & Europeans αβ1
Japanese & Chinese αβ2
αβ2
Alcohal acetaldehyde (accumulation) tachycardia
In viral hepatitis
Rapid rise in
transaminases
(AST & ALT) in
serum occurs even
before bilirubin
rise is seen
LEVELS OF ENZYMES IN MYOCARDIAL
INFARCTION
NAME OF THE ENZYME Normal values PRESENT IN
Aspartate Amino transferase 8-20U/L Myocardial infarction
(AST) or (SGOT)
Enzyme Use
Asparaginase Leukaemia
Collagenase Skin ulcers
Glutaminase Leukaemia
Hyaluronidase Heart attack
Lysozyme Antibiotic
Ribonuclease Antiviral
Dissolve blood clots &
Streptokinase
Myocardial Infraction
Trypsin Inflammation
Uricase Gout
Blood clots & pulmonary
Urokinase
embolism
Enz ymes used in Laboratory
Measurements and Gene Transfer
MCQs
1-The following is a group-specific enzyme:
A. Pepsin
B. Aminopeptidase
C. Phospholipase D
D. All of the above