Introduction 1 Micro
Introduction 1 Micro
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Course outline
Day two
• Cultivation of microorganisms(1hr)
• Normal microbial flora(1hr)
• Overview of virology (4hrs)
• Overview mycology(4hrs)
Cont’d…
7
Objectives for general bacteriology
After the end of this session, you should be able to
Classify microorganisms
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Introduction…
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The Beginnings…
– Although Leeuwenhoek was not concerned about the
origin of micro-organism; many other scientists were
searching for an explanation for spontaneous appearance
of living things from decaying meat, stagnating ponds,
fermenting grains and infected wounds.
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The Beginnings…
• On the bases of this observation, two major theories were
formulated.
1. Theory of Abiogenesis
2. Theory of Biogenesis
1. Theory of Abiogenesis deals with the theory of spontaneous
generation; stating that living things originated
“spontaneously” from non-living things.
• Aristotle (384-322 BC) is the founder of a theory
spontaneous generation.
• He observed spontaneous existence of fishes from dried
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ponds, when the pond was filled with rain.
The Beginnings…
2. Biogenesis: - States that life comes from pre existing life
Francesco Redi (1626-1697): He is the scientist who first
tried to set an experiment to disprove spontaneous
generation.
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The Beginnings…
Francisco Redi
• Introduced experimental procedure to disproof
spontaneous generation
• Utilized jars containing meat some were covered, some
were not.
• Maggots appeared in uncovered jars and conclude that
maggots did not emerge spontaneously but from the eggs
laid on the meat by the fly.
• The controversy on spontaneous generation took 200
years. 16
The Beginnings…
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The Beginnings…
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Therefore, Pasteur proved that microorganisms entered to
the broth with the air and micro organisms did not evolve
spontaneously 22
Cont’d…
• Then scientists tried to confirm the causative agent of
disease
• Until relatively recently the fact that many kinds diseases
are related to microorganisms was unknown
• Before the time of Pasteur, effective treatments for many
diseases were discovered by trial and error, but the
causes of the diseases were unknown
• Germ theory of disease holds that microorganisms are
responsible for infectious disease
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Cont’d…
• This theory was a difficult concept for many people to
accept at that time.
• But gradually scientists accumulated the information
needed to support the new germ theory
• It is now a fundamental part of modern medicine and
clinical microbiology, leading to such important
innovations as antibiotics and hygienic practice
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Foundation of modern medicine
• Germ theory of disease is the single most important
contribution to medical science and practice
Joseph Lister
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Cont’d…
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Koch…
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Koch…
specific disease.
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Koch's postulates
• They are summarized as follows:
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Exceptions to Koch's Postulates
• Although Koch's postulates are useful in determining the
causative agent of most bacterial diseases, there are some
exceptions.
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Exceptions to Koch's Postulates…
D. Many pathogens are species specific
E.g. Brucella abortus cause abortion in animals but not
in humans
E. Certain diseases develop only when an opportunistic
pathogen invades immuno-compromised host
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Exceptions to Koch's Postulates…
F. some pathogens can cause several disease conditions
M. tuberculosis, for example, is implicated in diseases
of the lungs, skin, bones, and internal organs
S. pyogenes can cause sore throat, scarlet fever, skin
infections, and osteomyelitis (inflammation of bone),
among other diseases
• When clinical signs and symptoms are used together
with laboratory methods, these infections can usually be
distinguished from infections of the same organs by
other pathogens 34
Exceptions to Koch's Postulates…
G. Ethical considerations may also impose an exception to
Koch's postulates
Human experiments with untreatable diseases are not
acceptable today
For example, some agents that cause disease in humans
have no other known host. An example is HIV, the cause of
AIDS.
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Pathological Mechanisms of
Bacterial Infections
1. Bacteria-mediated
Pathogenesis
2. Host-mediated
Pathogenesis
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Cont’d…
2 Toxins - Bacterial products that destroy tissues or trigger
degradative enzymes
A. Exotoxin
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Cont’d…
3. Siderophores
• iron in blood is bound either to hemoglobin in
erythrocytes or to transferrin in plasma and lactoferrin in
milk and other secretions.
• Some bacteria has receptors for eukaryotic iron-binding
proteins called Siderophores
• compete for iron effectively
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Cont’d…
Immuno-pathogenesis
kidney damage 41
Microbial defense against host immunologic
clearance
Avoids antibacterial defense by:
Capsule
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Cont’d…
Capsule of S. pyogens
Made of hyaluronic acid (mimic host tissue)
Masking (unrecognizing by host immune system
Capsule
Hard to be grasped by phagocytes
Protect destruction within phagolysosomes
S. pneumonia, B. anthracis, K. pneumonia
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Biofilm
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Cont’d…
• N.gonorrhoeae produce protease that degrade IgA
• S. Pyogens degrades C5a and inhibit chemotaxis WBC
to the site of infections or
• Some produce enzymes which kill phagocytes
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Cont’d…
• Gram negative bacteria has long O antigen which
grow. 47
Cont’d…
• Protein A
coats the surface of S. aurues
has affinity to Fc portion of Ig
prevent antibody mediated immune clearance of the
organism
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Structure and Function of Prokaryotic Cells
• Prokaryotic cells have three architectural regions
capsule,
plasma membrane
ribosomes and
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various sorts of inclusions
Bacterial Structure
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1. Bacterial Pili /fimbriae
• thin, hair-like appendages
• Short protein fibers
• Found among gram –ve and
some g +ve bacteria
• Protrude from surface of cell
• used for attachment to other
cells and to host cell or tissue for
pathogens
• Conjugation pili
– attachment between cells
– for exchange of genetic
material
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Joins bacterial cells for DNA transfer (conjugation)
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2. Bacterial Flagella
• Much longer than cell
• It is thread like appendages
• Organ of locomotion
– Provide motility
• made of protein subunit
called flagellin
• Flagellins are immunogenic
(H-antigen)
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Flagellar arrangements
• Different species of bacteria have different numbers
and arrangements of flagella
• Useful in identifying and classifying bacteria
antigenic nature
arrangement and number
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3. Glycocalyx
• Coating of bacteria, external to the cell wall
• Made of sugars and/or proteins
• 2 types
1. capsule - highly organized, tightly attached
2. slime layer - loosely organized and attached, non
uniform in density and thickness
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Functions
• Attachment to other bacteria or host tissues
• inhibits killing by WBCs and detergents
• Receptor
• Some produce biofilm that protects from
antibiotics and host defense ( tooth plaques, S.
mutans)
• Capsule and slime layer -unnecessary for growth
but need for survival
• important determinants of virulence
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4. Cell wall
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Cell wall of Gram positive bacteria
• Thick peptidoglycan
• Peptidoglycan contains: TA and LTA
• LTA anchored to the cell membrane
• TA and LTA antigenic (used for classification)
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Cell wall of Gram positive bacteria
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Structure of Cell walls of bacteria
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Cell wall of gram negative
• Contain thin peptidoglycan
• Contain outer membrane but has no TA/LTA
• Contain periplasmic space containing:-
variety of hydrolytic enzyme which are used for
metabolism/virulence factors (phosphatase, Beta
lactamase, lipase, protease, collagenase etc.)
Transport and binding proteins
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Gram negative cell wall
Lipopolysaccharide
Porin proteins
Outer membrane
Periplasmic space
Peptidoglycan
Cytoplasmic membrane
Cytoplasm
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Cytoplasmic membrane
• Lipid bilayer
• Semipermeable barrier
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The acid fast cell wall
• Resemble Gram positive cell wall
• Acid-fast bacteria have a cell wall with a relatively
impermeable cell wall containing a waxy lipid called
mycolic acid
• Difficult to stain
• Mycolic acids confer resistance to desiccation, most
antibiotics and Phagocytosis
Contributes to pathogenicity
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Plasmids
• small circular, double-stranded DNA
• free or integrated into the chromosome
• duplicated and passed on to offspring
• not essential to bacterial growth & metabolism
• may encode genes for antibiotic resistance, enzymes &
toxins
• used in genetic engineering- readily manipulated &
transferred from cell to cell
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Spore
• Multilayered structure
positive bacteria
of nutrients)
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Classification of microorganisms
• Despite their complexity and variety, all living cells can
characteristics
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prokaryotes
• Their DNA is not enclosed within a membrane and is
usually a singular circularly arranged chromosome
– (Some bacteria, such as Vibrio cholerae, have two
chromosomes, and some bacteria have a linearly
arranged chromosome).
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Prokaryote…
• They lack membrane-enclosed organelles
• Their cell walls almost always contain the complex
polysaccharide peptidoglycan
• They usually divide by binary fission
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Eukaryotes
• Their DNA is found in the cell's nucleus, which is
separated from the cytoplasm by a nuclear membrane,
and the DNA is found in multiple chromosomes.
• Their DNA is consistently associated with chromosomal
proteins called histones and with non histones.
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Eukaryotes…
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Comparison features of prokaryotic and eukaryotic cells
Characteris
Prokaryotes Eukaryotes
tic
Typical
bacteria protozoan, fungi, plants, animals
organisms
nucleoid
Type of
region; no real real nucleus with double membrane
nucleus
nucleus
circular linear molecules (chromosomes)
DNA
(usually) with histone proteins
RNA-/
coupled in RNA-synthesis inside the nucleus
protein-
cytoplasm protein synthesis in cytoplasm
synthesis
Ribosomes 50s+30s=70s 60s+40s=80s
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Comparison of features….
Characterist
Prokaryotes Eukaryotes
ic
Cytoplasmati Very few highly structured by
c structure structures endomembranes and a cytoskeleton
Binary fission
Mitosis
Cell division (simple
Meiosis
division)
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Bacterial morphology
Bacteria are differentiated into major categories
1. Shape
2. Size
4. Staining Characteristics
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Morphological features of bacteria
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1. Cocci:
• are round or oval bacteria
• may form pairs, chains, or irregular groups (grape like)
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2. Rods (bacilli):
• are stick-like bacteria with rounded, tapered (fusiform),
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• Spirochaetes are divided into three main groups:
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Microscopic morphology and staining reactions
THE GRAM STAIN:
– A staining method used to classify different bacteria
– It is one of the differential stains
– Used for the identification of pathogens in clinical
Specimens and cultures by their gram reactions, and
morphology
Differences in Gram reaction is attributed to the difference
in cell wall structure
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Reagents used in Gram-stain:
1. Crystal violet/Gentian violet: primary stain
2. Gram’s lodine/Lugol’s iodine: this serve as mordent
3. Acetone-alcohol: as decolorizer
4. Safranin: as counter stain
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Basic Gram Stain Method
Recommended for general bacteriology use
• Flood smear with Crystal Violet - 30 - 60 seconds then
rinse with tap water
Page 90
Examination & Interpretation
For smears prepared from clinical specimens
• 105 organisms/ml of un-centrifuged fluid (104 centrifuged)
organisms are required to be visible on slide
• At lower concentrations, organism will not be revealed even
if culture is positive
• Organisms seen on Gram stain, but fail to grow in culture
– fastidious (require specific media for growth)
– anaerobic bacteria
– patient has received antibiotics
Page 91
Reporting of Gram staining:
• The laboratory report should include:
– Gram Reaction
– morphology
– intracellularity or extracellularity
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Cell Wall Structure of Mycobacterium species:
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AFB Staining…
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AFB Staining…
• Reagents used in AFB:
– Carbol fuchsin- used as primary stain
– Acid- alcohol- as decolorizer
– Methylene blue or malachite green for staining back
ground
• Reporting system: Grading of AFB
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ZN Stained Smear
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Reporting: Grading of ZN Smears
WHO scale ZN 1000x, AFB count
• Negative 0 AFB / 100 HPF
• Scanty 1-9 AFB / 100 F
• 1+ 10-99 AFB / 100 F
• 2+ 1-10 AFB / 1 F on average
• 3+ >10 AFB / 1 F on average
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Question
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Summery
• If you have any questions and/ or comments
• Thank you
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