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Hadoop Hands-On Exercises: Lawrence Berkeley National Lab

This document outlines exercises for learning Hadoop, including running the word count example, using HDFS commands, streaming with Unix commands and scripts, and a census data analysis example using a mapper and reducer script. Participants will access a remote Hadoop cluster, load data into HDFS, run MapReduce jobs, and view outputs.

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jeevasakthi
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118 views

Hadoop Hands-On Exercises: Lawrence Berkeley National Lab

This document outlines exercises for learning Hadoop, including running the word count example, using HDFS commands, streaming with Unix commands and scripts, and a census data analysis example using a mapper and reducer script. Participants will access a remote Hadoop cluster, load data into HDFS, run MapReduce jobs, and view outputs.

Uploaded by

jeevasakthi
Copyright
© © All Rights Reserved
Available Formats
Download as PDF, TXT or read online on Scribd
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Hadoop Hands-On Exercises

Lawrence Berkeley National Lab


Oct 2011
We will
Training accounts/User Agreement forms
Test access to carver
HDFS commands
Monitoring
Run the word count example
Simple streaming with Unix commands
Streaming with simple scripts
Streaming Census example
Pig Examples
Additional Exercises
2
Instructions
http://tinyurl.com/nerschadoopoct
3
Login and Environment
ssh [username]@carver.nersc.gov
echo $SHELL
should be bash
4
Remote Participants
Visit: http://maghdp01.nersc.gov:50030/
http://magellan.nersc.gov
(Go to Using Magellan -> Creating a SOCKS proxy)
5
Environment Setup
$ ssh [username]@carver.nersc.gov
$ echo $SHELL
If your shell doesnt show /bin/bash please change
your shell
$ bash
Setup your environment to use Hadoop on Magellan
system
$ module load tig hadoop
6
Hadoop Command
hadoop command [genericOptions] [commandOptions]
Examples:-
command fs, jar, job
[genericOptions] - -conf, -D, -files, -libjars, -archives
[commandOptions] - -ls, -submit
7
HDFS Commands [1]
$ hadoop fs ls
If you see an error do the following where
[username] is your training account username
$ hadoop fs -mkdir /user/[username]
$ vi testfile1 [ Repeat for testfile2]
This is file 1
This is to test HDFS
$ hadoop fs -mkdir input
$ hadoop fs -put testfile* input
You can get help on commands -
$ hadoop fs -help
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HDFS Commands [2]
$ hadoop fs -cat input/testfile1
$ hadoop fs -cat input/testfile*
Download the files from HDFS into a directory called
input and check there is a input directory.
$ hadoop fs -get input input
$ ls input/
9
Monitoring
http://maghdp01.nersc.gov:50030/
http://maghdp01.nersc.gov:50070/
$ hadoop job -list
10
Wordcount Example
Input in HDFS
$ hadoop fs -mkdir wordcount-in
$ hadoop fs -put /global/scratch/sd/lavanya/
hadooptutorial/wordcount/* wordcount-in/
Run example
$ hadoop jar /usr/common/tig/hadoop/
hadoop-0.20.2+228/hadoop-0.20.2+228-examples.jar
wordcount wordcount-in wordcount-op
View output
$ hadoop fs -ls wordcount-op
$ hadoop fs -cat wordcount-op/part-r-00000
$ hadoop fs -cat wordcount-op/p* | grep Darcy
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Wordcount: Number of reduces
$ hadoop dfs -rmr wordcount-op
$ hadoop jar /usr/common/tig/hadoop/
hadoop-0.20.2+228/hadoop-0.20.2+228-examples.jar
wordcount -Dmapred.reduce.tasks=4 wordcount-in
wordcount-op
http://maghdp01.nersc.gov:50030/
12
Wordcount: GPFS
Setup permissions for Hadoop user [ONE-TIME]
$ mkdir /global/scratch/sd/[username]/hadoop
$ chmod -R 755 /global/scratch/sd/[username]
$ chmod -R 777 /global/scratch/sd/[username]/hadoop/
Run Job
$ hadoop jar /usr/common/tig/hadoop
/hadoop-0.20.2+228/hadoop-0.20.2+228-examples.jar wordcount -
Dfs.default.name=file://// /global/scratch/sd/lavanya/
hadooptutorial/wordcount/ /global/scratch/sd/[username]
hadoop/wordcount-gpfs/
Set perms for yourself
$ fixperms.sh /global/scratch/sd/[username]/hadoop/wordcount-
gpfs/
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Streaming with Unix Commands
$ hadoop jar $HADOOP_HOME/contrib/streaming/
hadoop*-streaming.jar -input wordcount-in -output
wordcount-streaming-op -mapper /bin/cat -reducer /
usr/bin/wc
$ hadoop fs -cat wordcount-streaming-op/p*
14
Streaming with Unix Commands/
GPFS
$ hadoop jar $HADOOP_HOME/contrib/streaming/
hadoop*-streaming.jar -Dfs.default.name=file:/// -
input /global/scratch/sd/lavanya/hadooptutorial/
wordcount/ -output /global/scratch/sd/[username]/
hadoop/wordcount-streaming-op -mapper /bin/cat -
reducer /usr/bin/wc
$ fixperms.sh /global/scratch/sd/[username]/hadoop/
wordcount-streaming-op
15
Streaming with Scripts
$ mkdir simple-streaming-example
$ cd simple-streaming-example
$ vi cat.sh
cat
Now let us test this
$ hadoop fs -mkdir cat-in
$ hadoop fs -put /global/scratch/sd/lavanya/
hadooptutorial/cat/in/* cat-in/
$ hadoop jar /usr/common/tig/hadoop/
hadoop-0.20.2+228/contrib/streaming/
hadoop*streaming*.jar -mapper cat.sh -input cat-in -
output cat-op -file cat.sh
16
Streaming with scripts Number
of reducers and mappers
$ hadoop jar /usr/common/tig/hadoop/
hadoop-0.20.2+228/contrib/streaming/
hadoop*streaming*.jar -Dmapred.reduce.tasks=0 -
mapper cat.sh -input cat-in -output cat-op -file cat.sh
$ hadoop jar /usr/common/tig/hadoop/
hadoop-0.20.2+228/contrib/streaming/
hadoop*streaming*.jar -
Dmapred.min.split.size=91212121212 -mapper cat.sh
-input cat-in -output cat-op -file cat.sh
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Census sample
$ mkdir census
$ cd census
$ cp /global/scratch/sd/lavanya/hadooptutorial/
census/censusdata.sample .
$ mkdir census
$ cd census
$ cp /global/scratch/sd/lavanya/hadooptutorial/
census/censusdata.sample .
18
Mapper
#The code is available in
$ vi mapper.sh
while read line; do
if [[ "$line" == *Alabama* ]]; then
echo "Alabama 1"
fi
if [[ "$line" == *Alaska* ]]; then
echo -e "Alaska\t1"
fi
done
$ chmod 755 mapper.sh
$ cat censusdata.sample | ./mapper.sh
19
Census Run
$ hadoop fs -mkdir census
$ hadoop fs -put /global/scratch/sd/lavanya/
hadooptutorial/census/censusdata.sample census/
$ hadoop jar /usr/common/tig/hadoop/
hadoop-0.20.2+228/contrib/streaming/
hadoop*streaming*.jar -mapper mapper.sh -input
census -output census-op -file mapper.sh reducer /
usr/bin/wc
$ hadoop fs -cat census-op/p*
20
Census Run: Mappers and
Reducers
$ hadoop fs -rmr census-op
$ hadoop jar /usr/common/tig/hadoop/
hadoop-0.20.2+228/contrib/streaming/
hadoop*streaming*.jar -Dmapred.map.tasks=10 -
Dmapred.reduce.tasks=2 -mapper mapper.sh -input
census -output census-op/ -file mapper.sh -reducer /
usr/bin/wc
21
Census: Custom Reducer
$ vi reducer.sh
last_key="Alabama"
while read line; do
key=`echo $line | cut -f1 -d' '`
val=`echo $line | cut -f2 -d' '`
if [[ "$last_key" = "$key" ]];then
let "count=count+1";
else
echo "**" $last_key $count
last_key=${key};
count=1;
fi
done
echo "**" $last_key $count
22
Census Run with custom reducer
$ hadoop fs -rmr census-op
$ hadoop jar /usr/common/tig/hadoop/
hadoop-0.20.2+228/contrib/streaming/
hadoop*streaming*.jar -Dmapred.map.tasks=10 -
Dmapred.reduce.tasks=2 -mapper mapper.sh -input
census -output census-op -file mapper.sh -reducer
reducer.sh -file reducer.sh
23

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